Wall clock time and date at job start Tue Mar 31 2020 23:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 H 1.08994 * 115.56712 * 29.30884 * 3 2 1 5 5 C 1.53006 * 117.49874 * 243.62085 * 3 2 1 6 6 C 1.53002 * 60.00187 * 252.51131 * 5 3 2 7 7 H 1.08996 * 117.49560 * 107.51072 * 6 5 3 8 8 C 1.50694 * 117.49878 * 252.51237 * 6 5 3 9 9 O 1.21282 * 120.00250 * 68.60458 * 8 6 5 10 10 N 1.34780 * 120.00118 * 248.61085 * 8 6 5 11 11 C 1.46500 * 119.99909 * 184.56024 * 10 8 6 12 12 C 1.53006 * 113.38013 * 283.93172 * 11 10 8 13 13 C 1.52995 * 109.47519 * 313.92539 * 12 11 10 14 14 O 1.42896 * 109.47276 * 175.29567 * 13 12 11 15 15 C 1.53508 * 114.17559 * 57.01619 * 11 10 8 16 16 N 1.47483 * 87.99672 * 87.64941 * 15 11 10 17 17 C 1.46899 * 110.99855 * 138.67194 * 16 15 11 18 18 C 1.50694 * 109.46996 * 169.99859 * 17 16 15 19 19 O 1.21290 * 120.00280 * 0.02562 * 18 17 16 20 20 N 1.34788 * 120.00120 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00118 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00398 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00123 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99539 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00180 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47018 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47172 * 120.00089 * 25 23 21 28 28 H 1.48497 * 109.47200 * 239.99882 * 25 23 21 29 29 C 1.47476 * 87.83544 * 26.98133 * 16 15 11 30 30 H 1.08999 * 109.47212 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46578 * 300.00004 * 1 2 3 32 32 H 1.09002 * 109.46655 * 60.00054 * 1 2 3 33 33 H 1.09008 * 109.47157 * 240.00011 * 2 1 3 34 34 H 1.08994 * 109.47427 * 120.00209 * 2 1 3 35 35 H 1.09006 * 117.49609 * 145.02044 * 5 3 2 36 36 H 1.08998 * 117.50084 * 0.02562 * 5 3 2 37 37 H 0.97003 * 119.99707 * 4.55275 * 10 8 6 38 38 H 1.08994 * 109.46681 * 73.92578 * 12 11 10 39 39 H 1.09004 * 109.46766 * 193.92094 * 12 11 10 40 40 H 1.09010 * 109.46951 * 295.29098 * 13 12 11 41 41 H 1.09000 * 109.47487 * 55.28835 * 13 12 11 42 42 H 0.96705 * 114.00083 * 179.97438 * 14 13 12 43 43 H 1.09003 * 113.47447 * 332.85644 * 15 11 10 44 44 H 1.08993 * 113.47940 * 202.44818 * 15 11 10 45 45 H 1.08996 * 109.47212 * 290.00416 * 17 16 15 46 46 H 1.09007 * 109.46677 * 50.00215 * 17 16 15 47 47 H 0.96993 * 119.99501 * 0.02562 * 20 18 17 48 48 H 0.97004 * 119.99398 * 179.97438 * 24 23 21 49 49 H 1.09006 * 113.47863 * 87.75325 * 29 16 15 50 50 H 1.09004 * 113.48027 * 218.16189 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1718 0.4813 5 6 2.8440 1.9075 -1.2159 6 6 3.5502 1.6579 0.1183 7 1 4.1806 0.7721 0.1959 8 6 4.0229 2.8619 0.8914 9 8 3.2159 3.6168 1.3912 10 7 5.3425 3.1001 1.0273 11 6 5.8039 4.2125 1.8614 12 6 5.6366 5.5803 1.1963 13 6 6.1398 5.5106 -0.2469 14 8 5.8834 6.7548 -0.9013 15 6 5.3112 4.1555 3.3142 16 7 6.4924 3.3299 3.6279 17 6 7.0850 3.7255 4.9125 18 6 8.1267 2.7148 5.3176 19 8 8.3536 1.7591 4.6059 20 7 8.8071 2.8732 6.4703 21 6 9.7552 1.9540 6.8385 22 1 9.9566 1.1026 6.2053 23 6 10.4563 2.1170 8.0271 24 7 10.2108 3.1526 8.7978 25 14 11.7476 0.8641 8.5292 26 1 11.8333 -0.1994 7.4964 27 1 13.0656 1.5360 8.6577 28 1 11.3708 0.2601 9.8324 29 6 7.1819 3.9884 2.5028 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.7213 2.9428 -1.5344 36 1 3.0093 1.1860 -2.0160 37 1 5.9867 2.5348 0.5729 38 1 4.5831 5.8598 1.2007 39 1 6.2123 6.3246 1.7464 40 1 7.2119 5.3133 -0.2487 41 1 5.6220 4.7093 -0.7740 42 1 6.1774 6.7828 -1.8221 43 1 4.3666 3.6244 3.4318 44 1 5.3144 5.1250 3.8122 45 1 7.5500 4.7061 4.8115 46 1 6.3060 3.7695 5.6738 47 1 8.6260 3.6376 7.0392 48 1 10.7000 3.2662 9.6277 49 1 7.6849 4.9139 2.7834 50 1 7.8236 3.3160 1.9332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700494711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:38 Heat of formation + Delta-G solvation = -64.800995 kcal Electronic energy + Delta-G solvation = -29841.262663 eV Core-core repulsion = 25677.375990 eV Total energy + Delta-G solvation = -4163.886673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18128 -39.49076 -37.94313 -37.03892 -36.97307 -34.30042 -33.79427 -32.38513 -31.50558 -31.19150 -29.10645 -26.06926 -25.72785 -24.77790 -24.02139 -23.77142 -21.77492 -20.96919 -20.22069 -19.43836 -19.12438 -17.92372 -17.70827 -17.39821 -16.17666 -15.95192 -15.68836 -15.33542 -15.12137 -14.98150 -14.84388 -14.55235 -14.41535 -14.28092 -13.98598 -13.68456 -13.24396 -13.10721 -12.80047 -12.71288 -12.43117 -12.39273 -12.26862 -11.92773 -11.76548 -11.60754 -11.54044 -11.32682 -11.28706 -11.17917 -10.91894 -10.58278 -10.46590 -10.34501 -10.28501 -10.22070 -10.17025 -9.73592 -9.50473 -9.16676 -8.77957 -8.19387 -7.95287 -6.40918 -3.81630 2.39847 2.92147 3.16288 3.26627 3.33731 3.57686 3.80487 3.90936 4.03922 4.14790 4.24362 4.34867 4.50673 4.53770 4.78275 4.87894 4.93972 4.98150 4.99015 5.05250 5.07069 5.16658 5.19814 5.25501 5.35698 5.36153 5.47972 5.52541 5.54781 5.61175 5.65333 5.71424 5.71866 5.76058 5.81775 5.84488 5.87234 5.90551 6.00198 6.11907 6.26884 6.50031 6.51792 7.13324 7.37889 7.42820 7.55864 8.06969 8.17682 8.63072 9.19314 9.55746 10.07988 10.77067 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011664 B = 0.002431 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.047120 B =11515.319218 C =13188.675273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.115 4.115 4 H 0.118 0.882 5 C -0.151 4.151 6 C -0.190 4.190 7 H 0.125 0.875 8 C 0.550 3.450 9 O -0.536 6.536 10 N -0.694 5.694 11 C 0.150 3.850 12 C -0.114 4.114 13 C 0.081 3.919 14 O -0.575 6.575 15 C 0.000 4.000 16 N -0.434 5.434 17 C 0.007 3.993 18 C 0.448 3.552 19 O -0.576 6.576 20 N -0.567 5.567 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.006 3.994 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.405 0.595 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.377 0.623 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.082 0.918 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.505 2.316 -20.610 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.134 4.134 4 H 0.136 0.864 5 C -0.188 4.188 6 C -0.212 4.212 7 H 0.143 0.857 8 C 0.337 3.663 9 O -0.413 6.413 10 N -0.345 5.345 11 C 0.062 3.938 12 C -0.154 4.154 13 C 0.003 3.997 14 O -0.380 6.380 15 C -0.130 4.130 16 N -0.156 5.156 17 C -0.125 4.125 18 C 0.233 3.767 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.123 4.123 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.240 0.760 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.224 0.776 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.100 0.900 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.115 1.643 -19.849 24.411 hybrid contribution 1.447 0.328 0.225 1.501 sum -12.668 1.971 -19.624 23.440 Atomic orbital electron populations 1.21737 0.95196 1.01642 1.02095 1.21166 0.96261 0.93643 1.02293 1.22463 0.91372 0.98741 1.00785 0.86420 1.23098 1.02391 1.02983 0.90356 1.22325 0.97924 0.99093 1.01815 0.85722 1.19572 0.81944 0.85168 0.79627 1.90680 1.53879 1.48193 1.48554 1.45377 1.07049 1.32218 1.49833 1.21244 0.96268 0.86065 0.90234 1.21711 1.03694 0.95491 0.94465 1.22086 0.98710 0.85507 0.93393 1.86480 1.85670 1.36323 1.29570 1.24180 0.97774 0.97994 0.93048 1.68867 1.03174 1.42607 1.00910 1.22529 0.98595 0.97527 0.93871 1.19647 0.85060 0.88341 0.83674 1.90511 1.68783 1.32893 1.53716 1.41885 1.34558 1.24948 1.19084 1.19730 1.13202 1.04962 1.04739 0.87947 1.25258 0.99068 0.97700 0.96038 1.69624 1.42556 1.28724 1.13513 0.85807 0.79857 0.80185 0.78537 1.19259 1.20791 1.20754 1.24284 0.94833 0.99146 0.94086 0.92624 0.92448 0.92620 0.91695 0.91201 0.88429 0.87909 0.75969 0.89815 0.90140 0.93593 0.93611 0.77607 0.88546 0.90548 0.92121 0.89285 0.77548 0.91962 0.90031 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.87 37.16 0.37 -0.65 16 2 C -0.10 -0.72 6.22 -26.73 -0.17 -0.88 16 3 C -0.12 -1.03 5.25 -90.61 -0.48 -1.50 16 4 H 0.12 1.25 7.60 -51.93 -0.39 0.86 16 5 C -0.15 -1.14 9.88 -26.73 -0.26 -1.40 16 6 C -0.19 -1.78 5.91 -91.77 -0.54 -2.32 16 7 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 8 C 0.55 6.66 7.18 -10.99 -0.08 6.58 16 9 O -0.54 -8.18 14.50 5.56 0.08 -8.10 16 10 N -0.69 -7.65 4.11 -47.26 -0.19 -7.84 16 11 C 0.15 1.79 0.76 -131.50 -0.10 1.69 16 12 C -0.11 -1.27 5.18 -26.73 -0.14 -1.41 16 13 C 0.08 0.77 6.86 37.15 0.25 1.02 16 14 O -0.58 -5.73 13.66 -35.23 -0.48 -6.21 16 15 C 0.00 0.00 6.55 -7.55 -0.05 -0.05 16 16 N -0.43 -7.24 5.82 -245.88 -1.43 -8.67 16 17 C 0.01 0.12 5.30 -4.98 -0.03 0.10 16 18 C 0.45 10.71 7.85 -10.98 -0.09 10.63 16 19 O -0.58 -15.82 16.01 5.55 0.09 -15.73 16 20 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 C 0.01 0.08 7.08 -7.49 -0.05 0.03 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.41 7.88 -51.92 -0.41 0.00 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 37 H 0.41 3.70 8.79 -40.82 -0.36 3.34 16 38 H 0.08 1.09 7.82 -51.93 -0.41 0.69 16 39 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 40 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 41 H 0.05 0.42 7.34 -51.93 -0.38 0.03 16 42 H 0.38 1.97 9.12 45.56 0.42 2.39 16 43 H 0.10 1.53 6.80 -51.93 -0.35 1.17 16 44 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 45 H 0.06 0.96 7.30 -51.93 -0.38 0.58 16 46 H 0.09 1.49 8.08 -51.92 -0.42 1.08 16 47 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.08 1.02 7.20 -51.93 -0.37 0.64 16 50 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 412.58 15.07 6.22 6.22 Total: -1.00 -35.07 412.58 -9.19 -44.25 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -7.51 Total: 14.73 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.60 Total: 3.81 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.96 Total: -55.12 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.31 Total: -30.04 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.07 -9.19 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700494711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.549 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds