Wall clock time and date at job start Tue Mar 31 2020 23:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 H 1.08994 * 115.56712 * 29.30884 * 3 2 1 5 5 C 1.53006 * 117.49874 * 243.62085 * 3 2 1 6 6 C 1.53002 * 60.00187 * 252.51131 * 5 3 2 7 7 H 1.08996 * 117.49560 * 107.51072 * 6 5 3 8 8 C 1.50694 * 117.49878 * 252.51237 * 6 5 3 9 9 O 1.21282 * 120.00250 * 68.60458 * 8 6 5 10 10 N 1.34780 * 120.00118 * 248.61085 * 8 6 5 11 11 C 1.46500 * 119.99909 * 184.56024 * 10 8 6 12 12 C 1.53006 * 113.38013 * 283.93172 * 11 10 8 13 13 C 1.52995 * 109.47519 * 313.92539 * 12 11 10 14 14 O 1.42896 * 109.47276 * 175.29567 * 13 12 11 15 15 C 1.53508 * 114.17559 * 57.01619 * 11 10 8 16 16 N 1.47483 * 87.99672 * 87.64941 * 15 11 10 17 17 C 1.46899 * 110.99855 * 138.67194 * 16 15 11 18 18 C 1.50694 * 109.46996 * 169.99859 * 17 16 15 19 19 O 1.21290 * 120.00280 * 0.02562 * 18 17 16 20 20 N 1.34788 * 120.00120 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00118 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00398 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00123 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99539 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00180 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47018 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47172 * 120.00089 * 25 23 21 28 28 H 1.48497 * 109.47200 * 239.99882 * 25 23 21 29 29 C 1.47476 * 87.83544 * 26.98133 * 16 15 11 30 30 H 1.08999 * 109.47212 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46578 * 300.00004 * 1 2 3 32 32 H 1.09002 * 109.46655 * 60.00054 * 1 2 3 33 33 H 1.09008 * 109.47157 * 240.00011 * 2 1 3 34 34 H 1.08994 * 109.47427 * 120.00209 * 2 1 3 35 35 H 1.09006 * 117.49609 * 145.02044 * 5 3 2 36 36 H 1.08998 * 117.50084 * 0.02562 * 5 3 2 37 37 H 0.97003 * 119.99707 * 4.55275 * 10 8 6 38 38 H 1.08994 * 109.46681 * 73.92578 * 12 11 10 39 39 H 1.09004 * 109.46766 * 193.92094 * 12 11 10 40 40 H 1.09010 * 109.46951 * 295.29098 * 13 12 11 41 41 H 1.09000 * 109.47487 * 55.28835 * 13 12 11 42 42 H 0.96705 * 114.00083 * 179.97438 * 14 13 12 43 43 H 1.09003 * 113.47447 * 332.85644 * 15 11 10 44 44 H 1.08993 * 113.47940 * 202.44818 * 15 11 10 45 45 H 1.08996 * 109.47212 * 290.00416 * 17 16 15 46 46 H 1.09007 * 109.46677 * 50.00215 * 17 16 15 47 47 H 0.96993 * 119.99501 * 0.02562 * 20 18 17 48 48 H 0.97004 * 119.99398 * 179.97438 * 24 23 21 49 49 H 1.09006 * 113.47863 * 87.75325 * 29 16 15 50 50 H 1.09004 * 113.48027 * 218.16189 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1718 0.4813 5 6 2.8440 1.9075 -1.2159 6 6 3.5502 1.6579 0.1183 7 1 4.1806 0.7721 0.1959 8 6 4.0229 2.8619 0.8914 9 8 3.2159 3.6168 1.3912 10 7 5.3425 3.1001 1.0273 11 6 5.8039 4.2125 1.8614 12 6 5.6366 5.5803 1.1963 13 6 6.1398 5.5106 -0.2469 14 8 5.8834 6.7548 -0.9013 15 6 5.3112 4.1555 3.3142 16 7 6.4924 3.3299 3.6279 17 6 7.0850 3.7255 4.9125 18 6 8.1267 2.7148 5.3176 19 8 8.3536 1.7591 4.6059 20 7 8.8071 2.8732 6.4703 21 6 9.7552 1.9540 6.8385 22 1 9.9566 1.1026 6.2053 23 6 10.4563 2.1170 8.0271 24 7 10.2108 3.1526 8.7978 25 14 11.7476 0.8641 8.5292 26 1 11.8333 -0.1994 7.4964 27 1 13.0656 1.5360 8.6577 28 1 11.3708 0.2601 9.8324 29 6 7.1819 3.9884 2.5028 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.7213 2.9428 -1.5344 36 1 3.0093 1.1860 -2.0160 37 1 5.9867 2.5348 0.5729 38 1 4.5831 5.8598 1.2007 39 1 6.2123 6.3246 1.7464 40 1 7.2119 5.3133 -0.2487 41 1 5.6220 4.7093 -0.7740 42 1 6.1774 6.7828 -1.8221 43 1 4.3666 3.6244 3.4318 44 1 5.3144 5.1250 3.8122 45 1 7.5500 4.7061 4.8115 46 1 6.3060 3.7695 5.6738 47 1 8.6260 3.6376 7.0392 48 1 10.7000 3.2662 9.6277 49 1 7.6849 4.9139 2.7834 50 1 7.8236 3.3160 1.9332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700494711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:37 Heat of formation + Delta-G solvation = -93.802591 kcal Electronic energy + Delta-G solvation = -29842.520266 eV Core-core repulsion = 25677.375990 eV Total energy + Delta-G solvation = -4165.144277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.25708 -40.53762 -39.67110 -37.92649 -37.74944 -35.97857 -35.22981 -33.30115 -33.04583 -32.34649 -30.42608 -27.27875 -27.17730 -25.93186 -25.04658 -24.54446 -22.87411 -21.73170 -21.04472 -21.02078 -20.32297 -19.88665 -18.57152 -18.24891 -17.79371 -17.14541 -16.76843 -16.62173 -16.26238 -16.15630 -15.97384 -15.72246 -15.49652 -15.23307 -15.21570 -14.92407 -14.58773 -14.53436 -13.80105 -13.56005 -13.50778 -13.42678 -13.38718 -13.09823 -12.96952 -12.93650 -12.75191 -12.42611 -12.34269 -12.21502 -12.17273 -12.11241 -11.91947 -11.55390 -11.50457 -11.21082 -11.00093 -10.90285 -10.67419 -10.40023 -10.16203 -10.01586 -9.73597 -8.47244 -5.95912 1.35867 1.40934 1.50115 1.55187 2.03873 2.04551 2.27542 2.73395 2.86745 2.98181 3.19118 3.24443 3.38600 3.62766 3.78926 3.85614 3.87983 4.08708 4.10405 4.20036 4.23405 4.29087 4.30191 4.36184 4.40269 4.47114 4.49145 4.53661 4.58383 4.65128 4.70439 4.75508 4.78475 4.93730 4.94925 5.00693 5.08560 5.16100 5.23388 5.27637 5.29372 5.40412 5.49116 5.55288 5.83115 6.04383 6.54677 6.59865 6.88523 7.12495 7.26272 7.55794 8.11731 8.70509 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011664 B = 0.002431 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.047120 B =11515.319218 C =13188.675273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.124 4.124 4 H 0.094 0.906 5 C -0.128 4.128 6 C -0.199 4.199 7 H 0.139 0.861 8 C 0.545 3.455 9 O -0.574 6.574 10 N -0.689 5.689 11 C 0.165 3.835 12 C -0.109 4.109 13 C 0.084 3.916 14 O -0.594 6.594 15 C 0.001 3.999 16 N -0.464 5.464 17 C 0.019 3.981 18 C 0.445 3.555 19 O -0.615 6.615 20 N -0.576 5.576 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.008 3.992 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.415 0.585 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.397 0.603 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.098 0.902 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 2.356 -21.878 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.143 4.143 4 H 0.112 0.888 5 C -0.165 4.165 6 C -0.220 4.220 7 H 0.156 0.844 8 C 0.334 3.666 9 O -0.453 6.453 10 N -0.340 5.340 11 C 0.077 3.923 12 C -0.148 4.148 13 C 0.007 3.993 14 O -0.403 6.403 15 C -0.128 4.128 16 N -0.187 5.187 17 C -0.113 4.113 18 C 0.232 3.768 19 O -0.501 6.501 20 N -0.214 5.214 21 C -0.460 4.460 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.121 4.121 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.148 0.852 37 H 0.252 0.748 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.247 0.753 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.119 0.881 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.116 0.884 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.599 1.701 -21.139 25.193 hybrid contribution 1.241 0.343 0.592 1.417 sum -12.358 2.044 -20.547 24.064 Atomic orbital electron populations 1.21736 0.94874 1.02188 1.01843 1.21161 0.96544 0.92571 1.02705 1.22455 0.90747 0.99217 1.01862 0.88792 1.23178 0.99932 1.03393 0.89997 1.22353 0.98319 0.98330 1.03028 0.84369 1.20071 0.81801 0.85511 0.79266 1.90663 1.54786 1.49668 1.50188 1.45377 1.07137 1.32096 1.49401 1.21068 0.94781 0.86947 0.89495 1.21627 1.02555 0.94711 0.95932 1.22026 0.99502 0.85555 0.92248 1.86423 1.86059 1.36423 1.31365 1.24179 0.95839 0.98000 0.94777 1.68813 1.04654 1.44273 1.00913 1.22409 0.97192 0.96558 0.95102 1.20660 0.85030 0.88648 0.82418 1.90476 1.70057 1.34892 1.54679 1.41958 1.34735 1.24836 1.19890 1.19673 1.15242 1.05514 1.05562 0.90383 1.26050 1.00505 0.99449 0.95430 1.69683 1.43165 1.29643 1.13777 0.84867 0.77612 0.77751 0.78086 1.19754 1.19492 1.19721 1.24345 0.95359 0.99437 0.93002 0.91642 0.93578 0.92047 0.89911 0.92083 0.88918 0.85197 0.74774 0.91892 0.89404 0.92082 0.93280 0.75270 0.90672 0.88832 0.89331 0.88094 0.77086 0.91337 0.88414 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.87 71.98 0.71 -1.20 16 2 C -0.09 -1.28 6.22 30.59 0.19 -1.09 16 3 C -0.12 -2.15 5.25 -10.79 -0.06 -2.21 16 4 H 0.09 2.10 7.60 -2.39 -0.02 2.08 16 5 C -0.13 -1.70 9.88 30.60 0.30 -1.40 16 6 C -0.20 -3.54 5.91 -11.54 -0.07 -3.61 16 7 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 8 C 0.55 13.14 7.18 87.65 0.63 13.77 16 9 O -0.57 -17.95 14.50 -3.04 -0.04 -17.99 16 10 N -0.69 -14.72 4.11 -421.83 -1.73 -16.46 16 11 C 0.17 3.81 0.76 4.08 0.00 3.81 16 12 C -0.11 -2.30 5.18 30.59 0.16 -2.14 16 13 C 0.08 1.45 6.86 71.98 0.49 1.94 16 14 O -0.59 -10.74 13.66 -148.98 -2.03 -12.77 16 15 C 0.00 0.04 6.55 83.57 0.55 0.59 16 16 N -0.46 -15.22 5.82 -931.84 -5.43 -20.65 16 17 C 0.02 0.67 5.30 85.56 0.45 1.12 16 18 C 0.45 21.49 7.85 87.65 0.69 22.17 16 19 O -0.62 -34.48 16.01 -3.06 -0.05 -34.53 16 20 N -0.58 -29.91 5.29 -306.98 -1.62 -31.53 16 21 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -50.07 13.05 21.66 0.28 -49.78 16 25 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 C 0.01 0.20 7.08 83.61 0.59 0.79 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.85 7.88 -2.38 -0.02 0.83 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.13 1.05 8.03 -2.39 -0.02 1.03 16 37 H 0.42 7.13 8.79 -92.71 -0.82 6.31 16 38 H 0.06 1.62 7.82 -2.39 -0.02 1.60 16 39 H 0.09 1.71 7.88 -2.38 -0.02 1.69 16 40 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.05 0.80 7.34 -2.39 -0.02 0.79 16 42 H 0.40 3.32 9.12 -74.05 -0.68 2.64 16 43 H 0.07 2.42 6.80 -2.39 -0.02 2.41 16 44 H 0.09 2.24 7.87 -2.39 -0.02 2.22 16 45 H 0.09 2.61 7.30 -2.39 -0.02 2.59 16 46 H 0.10 3.30 8.08 -2.38 -0.02 3.28 16 47 H 0.40 19.50 7.90 -92.71 -0.73 18.76 16 48 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 49 H 0.10 2.21 7.20 -2.38 -0.02 2.19 16 50 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -76.83 412.58 -3.92 -80.75 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: -1.25 Total: 43.66 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 5.92 Total: 14.14 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -8.50 Total: -118.41 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -2.13 Total: -65.29 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -76.83 -3.92 -80.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700494711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.049 kcal (2) G-P(sol) polarization free energy of solvation -76.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds