Wall clock time and date at job start Tue Mar 31 2020 23:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47412 * 2 1 4 4 C 1.50699 * 109.47342 * 120.00140 * 2 1 3 5 5 O 1.21281 * 119.99877 * 325.16035 * 4 2 1 6 6 N 1.34777 * 120.00062 * 145.15921 * 4 2 1 7 7 C 1.47477 * 125.66575 * 5.04740 * 6 4 2 8 8 C 1.55021 * 104.91247 * 155.98750 * 7 6 4 9 9 C 1.54534 * 101.49396 * 36.39828 * 8 7 6 10 10 C 1.47185 * 125.66307 * 185.07510 * 6 4 2 11 11 C 1.52334 * 110.10707 * 206.76380 * 9 8 7 12 12 N 1.47154 * 109.29879 * 292.49774 * 11 9 8 13 13 C 1.46906 * 110.99658 * 178.89565 * 12 11 9 14 14 C 1.50701 * 109.46954 * 293.27209 * 13 12 11 15 15 O 1.21291 * 120.00037 * 353.45260 * 14 13 12 16 16 N 1.34777 * 119.99684 * 173.45329 * 14 13 12 17 17 C 1.37098 * 119.99543 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00395 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99568 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00088 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99756 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46827 * 60.00656 * 21 19 17 23 23 H 1.48500 * 109.46929 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47244 * 300.00695 * 21 19 17 25 25 C 1.47022 * 110.67909 * 302.61535 * 12 11 9 26 26 C 1.53099 * 109.37443 * 59.16441 * 25 12 11 27 27 O 1.42138 * 110.26202 * 83.80912 * 9 8 7 28 28 H 1.09005 * 109.46937 * 299.99963 * 1 2 3 29 29 H 1.08996 * 109.47424 * 59.99582 * 1 2 3 30 30 H 1.09001 * 109.47387 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47303 * 239.99915 * 2 1 3 32 32 H 1.09002 * 109.47540 * 184.92616 * 3 2 1 33 33 H 1.09000 * 109.47316 * 304.93246 * 3 2 1 34 34 H 1.09006 * 109.46948 * 64.93130 * 3 2 1 35 35 H 1.09006 * 110.35303 * 37.13086 * 7 6 4 36 36 H 1.08999 * 110.35482 * 274.84920 * 7 6 4 37 37 H 1.09000 * 111.01521 * 278.34141 * 8 7 6 38 38 H 1.08999 * 111.01981 * 154.44896 * 8 7 6 39 39 H 1.08997 * 109.91672 * 62.10758 * 10 6 4 40 40 H 1.09005 * 109.90818 * 300.83530 * 10 6 4 41 41 H 1.08994 * 109.49747 * 172.55090 * 11 9 8 42 42 H 1.08999 * 109.50106 * 52.44540 * 11 9 8 43 43 H 1.09001 * 109.46923 * 173.27357 * 13 12 11 44 44 H 1.08995 * 109.47077 * 53.27464 * 13 12 11 45 45 H 0.96995 * 120.00049 * 0.02562 * 16 14 13 46 46 H 0.97007 * 120.00233 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.48854 * 179.13030 * 25 12 11 48 48 H 1.08994 * 109.49004 * 299.19214 * 25 12 11 49 49 H 1.09004 * 109.51739 * 182.65337 * 26 25 12 50 50 H 1.08997 * 109.56714 * 62.51615 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.4217 -0.6203 2.2744 6 7 3.1601 -1.4459 1.1706 7 6 4.0537 -1.5565 0.0026 8 6 5.4316 -1.9548 0.5907 9 6 5.0139 -2.8910 1.7470 10 6 3.7043 -2.2725 2.2601 11 6 6.0764 -2.8812 2.8386 12 7 7.3041 -3.5117 2.3281 13 6 8.3645 -3.4986 3.3447 14 6 8.7911 -2.0772 3.6072 15 8 8.3510 -1.1761 2.9251 16 7 9.6617 -1.8075 4.6001 17 6 10.0502 -0.5145 4.8386 18 1 9.6583 0.2879 4.2312 19 6 10.9473 -0.2364 5.8626 20 7 11.4238 -1.2126 6.6019 21 14 11.4761 1.5254 6.1880 22 1 10.2846 2.3461 6.5224 23 1 12.4317 1.5535 7.3244 24 1 12.1328 2.0772 4.9757 25 6 7.0318 -4.8814 1.8684 26 6 5.9750 -4.8449 0.7613 27 8 4.7935 -4.2077 1.2591 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1264 1.4437 -0.0882 33 1 1.6063 1.9812 -0.8425 34 1 1.7506 1.9301 0.9309 35 1 4.1241 -0.5987 -0.5129 36 1 3.6944 -2.3286 -0.6778 37 1 5.9630 -1.0809 0.9676 38 1 6.0320 -2.4877 -0.1465 39 1 2.9969 -3.0611 2.5167 40 1 3.9043 -1.6512 3.1331 41 1 5.7145 -3.4371 3.7035 42 1 6.2895 -1.8527 3.1297 43 1 9.2182 -4.0739 2.9866 44 1 7.9890 -3.9415 4.2671 45 1 10.0139 -2.5282 5.1454 46 1 12.0504 -1.0185 7.3165 47 1 7.9494 -5.3240 1.4806 48 1 6.6640 -5.4786 2.7026 49 1 5.7369 -5.8625 0.4514 50 1 6.3588 -4.2850 -0.0915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700562728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:24 Heat of formation + Delta-G solvation = -104.363826 kcal Electronic energy + Delta-G solvation = -30996.249909 eV Core-core repulsion = 26830.647663 eV Total energy + Delta-G solvation = -4165.602246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.86727 -39.56548 -38.22240 -36.65922 -35.25612 -34.60000 -33.84968 -31.89631 -31.27239 -30.02934 -29.07209 -27.47937 -27.08152 -25.43047 -23.98730 -23.79245 -22.61004 -21.66022 -19.56730 -19.23394 -18.83873 -17.91050 -17.54074 -16.83188 -16.32627 -15.86877 -15.54682 -15.41739 -15.18076 -14.79368 -14.60235 -14.46073 -14.13223 -13.87817 -13.85162 -13.40421 -13.28898 -13.26817 -13.00001 -12.79886 -12.61199 -12.26497 -12.15589 -12.10639 -11.84289 -11.74855 -11.54464 -11.42853 -11.34988 -11.26029 -11.17702 -11.06706 -10.87806 -10.46887 -10.39861 -10.24426 -9.82416 -9.60159 -9.50195 -8.72395 -8.50863 -8.04561 -7.96753 -6.45023 -3.86037 2.56409 2.83248 3.17671 3.23948 3.27834 3.56840 3.78354 3.85833 4.16974 4.28638 4.47939 4.57786 4.70111 4.77006 4.82449 4.92708 4.99759 5.10629 5.16020 5.17116 5.22364 5.25075 5.37300 5.38238 5.41000 5.50202 5.53964 5.55682 5.57914 5.65618 5.69762 5.73257 5.75303 5.82531 5.93291 5.95276 5.98129 6.04948 6.13382 6.17548 6.20177 6.24480 7.05875 7.11558 7.21411 7.43326 7.51685 8.02059 8.09466 8.57494 9.14306 9.50316 10.01473 10.72528 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.002954 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.964523 B = 9475.611212 C =11228.205474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.533 3.467 5 O -0.542 6.542 6 N -0.615 5.615 7 C 0.100 3.900 8 C -0.141 4.141 9 C 0.113 3.887 10 C 0.124 3.876 11 C 0.038 3.962 12 N -0.508 5.508 13 C 0.045 3.955 14 C 0.442 3.558 15 O -0.578 6.578 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.014 3.986 26 C 0.065 3.935 27 O -0.371 6.371 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.036 0.964 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.086 0.914 48 H 0.040 0.960 49 H 0.097 0.903 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.057 -5.652 -14.186 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.200 4.200 4 C 0.322 3.678 5 O -0.419 6.419 6 N -0.349 5.349 7 C -0.023 4.023 8 C -0.179 4.179 9 C 0.073 3.927 10 C 0.001 3.999 11 C -0.090 4.090 12 N -0.233 5.233 13 C -0.086 4.086 14 C 0.227 3.773 15 O -0.462 6.462 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.114 4.114 26 C -0.012 4.012 27 O -0.290 6.290 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.130 0.870 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.115 0.885 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.629 -4.754 -14.309 21.009 hybrid contribution 0.815 -0.217 1.285 1.537 sum -13.814 -4.971 -13.025 19.626 Atomic orbital electron populations 1.21669 0.92494 1.02446 1.02687 1.21248 0.98069 0.97599 0.96147 1.21743 1.01486 0.93656 1.03082 1.20387 0.78901 0.78091 0.90434 1.90694 1.57107 1.62266 1.31827 1.48556 1.24204 1.46930 1.15256 1.22451 0.89893 1.01470 0.88496 1.23206 0.95399 1.01096 0.98242 1.21802 0.93598 0.83280 0.94020 1.21699 0.93591 0.94073 0.90495 1.22655 0.88677 1.03123 0.94579 1.61862 1.06940 1.16344 1.38144 1.21900 0.95141 0.97748 0.93783 1.19684 0.84186 0.89491 0.83890 1.90487 1.58572 1.46931 1.50177 1.41872 1.39305 1.09498 1.29263 1.19635 1.23526 0.84773 1.14993 0.87945 1.25261 0.96862 0.99669 0.96070 1.69599 1.31919 1.32061 1.20674 0.85927 0.78505 0.81936 0.77924 1.19879 1.20965 1.19873 1.22822 0.99847 0.90388 0.98356 1.22702 0.85054 0.97769 0.95657 1.87851 1.32441 1.27643 1.81077 0.91335 0.91796 0.92514 0.89346 0.92001 0.91318 0.91711 0.90456 0.91220 0.88271 0.88976 0.90352 0.89628 0.94596 0.86998 0.89052 0.93397 0.77509 0.91781 0.89575 0.94167 0.88486 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.85 37.15 0.33 -0.88 16 2 C -0.11 -1.06 2.69 -91.78 -0.25 -1.30 16 3 C -0.14 -1.24 9.17 37.16 0.34 -0.90 16 4 C 0.53 7.25 6.84 -10.99 -0.08 7.18 16 5 O -0.54 -9.38 16.61 5.56 0.09 -9.29 16 6 N -0.62 -7.97 3.33 -170.69 -0.57 -8.54 16 7 C 0.10 1.05 6.17 -2.44 -0.02 1.03 16 8 C -0.14 -1.77 5.86 -24.86 -0.15 -1.92 16 9 C 0.11 1.53 0.83 -89.81 -0.07 1.45 16 10 C 0.12 1.73 6.24 -3.33 -0.02 1.71 16 11 C 0.04 0.60 3.82 -4.03 -0.02 0.58 16 12 N -0.51 -7.84 4.23 -236.11 -1.00 -8.84 16 13 C 0.05 0.77 5.45 -4.97 -0.03 0.74 16 14 C 0.44 9.95 7.36 -10.98 -0.08 9.87 16 15 O -0.58 -14.64 14.29 5.55 0.08 -14.56 16 16 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 17 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 18 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 21 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 C 0.01 0.17 5.62 -3.71 -0.02 0.15 16 26 C 0.06 0.68 6.76 37.21 0.25 0.94 16 27 O -0.37 -4.77 10.28 -35.23 -0.36 -5.13 16 28 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.69 7.14 -51.93 -0.37 0.32 16 32 H 0.06 0.54 7.81 -51.93 -0.41 0.13 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.69 7.35 -51.93 -0.38 0.30 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 1.49 7.94 -51.93 -0.41 1.07 16 38 H 0.09 1.09 6.20 -51.93 -0.32 0.77 16 39 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 40 H 0.09 1.28 7.80 -51.93 -0.40 0.87 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.11 2.11 6.06 -51.93 -0.31 1.80 16 43 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 48 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.06 0.65 6.38 -51.93 -0.33 0.32 16 LS Contribution 394.12 15.07 5.94 5.94 Total: -1.00 -32.33 394.12 -8.46 -40.79 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.24 Total: 10.39 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -0.04 Total: 10.86 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.90 Total: -54.80 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.19 Total: -28.98 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.33 -8.46 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700562728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.577 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds