Wall clock time and date at job start Tue Mar 31 2020 23:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46964 * 2 1 4 4 H 1.09005 * 110.35158 * 52.85946 * 3 2 1 5 5 O 1.43646 * 110.31319 * 290.71567 * 3 2 1 6 6 C 1.43233 * 109.97132 * 216.66092 * 5 3 2 7 7 C 1.54379 * 107.59101 * 1.70312 * 6 5 3 8 8 C 1.54949 * 110.30913 * 174.99974 * 3 2 1 9 9 H 1.09003 * 111.12040 * 37.40186 * 8 3 2 10 10 C 1.50696 * 111.12557 * 273.28166 * 8 3 2 11 11 O 1.21272 * 120.00470 * 359.97438 * 10 8 3 12 12 N 1.34780 * 119.99699 * 180.02562 * 10 8 3 13 13 C 1.46501 * 119.99851 * 180.02562 * 12 10 8 14 14 H 1.09004 * 112.85246 * 23.79826 * 13 12 10 15 15 C 1.53780 * 113.61563 * 155.00060 * 13 12 10 16 16 C 1.53779 * 87.08279 * 139.97820 * 15 13 12 17 17 H 1.09006 * 113.61747 * 89.19934 * 16 15 13 18 18 N 1.46905 * 113.61397 * 220.01849 * 16 15 13 19 19 C 1.46901 * 110.99870 * 203.47133 * 18 16 15 20 20 C 1.50697 * 109.46943 * 180.02562 * 19 18 16 21 21 O 1.21292 * 120.00024 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99767 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99759 * 179.97438 * 22 20 19 24 24 H 1.08000 * 120.00171 * 359.97438 * 23 22 20 25 25 C 1.38951 * 120.00074 * 179.97438 * 23 22 20 26 26 N 1.31416 * 119.99768 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00310 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47100 * 90.00351 * 27 25 23 29 29 H 1.48501 * 109.47251 * 210.00371 * 27 25 23 30 30 H 1.48503 * 109.46881 * 330.00485 * 27 25 23 31 31 C 1.53778 * 87.17459 * 334.60833 * 16 15 13 32 32 H 1.09009 * 109.47338 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47296 * 299.99482 * 1 2 3 34 34 H 1.09000 * 109.47376 * 59.99674 * 1 2 3 35 35 H 1.09003 * 109.47296 * 240.00517 * 2 1 3 36 36 H 1.09000 * 109.47376 * 120.00326 * 2 1 3 37 37 H 1.08998 * 109.83235 * 121.22555 * 6 5 3 38 38 H 1.09008 * 109.82582 * 242.19502 * 6 5 3 39 39 H 1.09001 * 110.85352 * 263.17345 * 7 6 5 40 40 H 1.09000 * 110.84521 * 139.54992 * 7 6 5 41 41 H 0.96998 * 120.00523 * 359.97438 * 12 10 8 42 42 H 1.09000 * 113.61878 * 25.42654 * 15 13 12 43 43 H 1.09001 * 113.61492 * 254.52478 * 15 13 12 44 44 H 1.00901 * 110.99869 * 79.51844 * 18 16 15 45 45 H 1.09004 * 109.47031 * 299.99620 * 19 18 16 46 46 H 1.08995 * 109.47111 * 59.99900 * 19 18 16 47 47 H 0.96997 * 120.00713 * 359.97438 * 22 20 19 48 48 H 0.96999 * 119.99907 * 179.97438 * 26 25 23 49 49 H 1.08996 * 113.61750 * 139.93718 * 31 16 15 50 50 H 1.09003 * 113.61557 * 270.84524 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5845 2.0056 0.8147 5 8 1.7569 2.0715 -1.2600 6 6 2.8319 2.9458 -1.6228 7 6 3.9114 2.8386 -0.5245 8 6 3.5840 1.4671 0.1267 9 1 4.0370 0.6480 -0.4321 10 6 4.0110 1.4360 1.5715 11 8 3.1759 1.3978 2.4500 12 7 5.3212 1.4518 1.8875 13 6 5.7363 1.4210 3.2921 14 1 4.9826 0.9835 3.9468 15 6 7.1464 0.8457 3.5052 16 6 7.3504 1.9457 4.5603 17 1 7.0396 1.6521 5.5630 18 7 8.6903 2.5473 4.5316 19 6 9.0268 3.1452 5.8306 20 6 10.4048 3.7515 5.7626 21 8 11.0439 3.6910 4.7335 22 7 10.9274 4.3600 6.8457 23 6 12.1812 4.9111 6.7840 24 1 12.7503 4.8573 5.8677 25 6 12.7199 5.5389 7.9005 26 7 12.0276 5.6040 9.0156 27 14 14.4285 6.2892 7.8167 28 1 14.3268 7.7043 7.3782 29 1 15.0610 6.2312 9.1591 30 1 15.2561 5.5285 6.8463 31 6 6.2917 2.7634 3.8019 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 3.2490 2.6405 -2.5824 38 1 2.4689 3.9717 -1.6856 39 1 3.8091 3.6463 0.2003 40 1 4.9100 2.8320 -0.9614 41 1 5.9892 1.4827 1.1849 42 1 7.7960 0.9485 2.6360 43 1 7.1486 -0.1625 3.9196 44 1 8.7655 3.2275 3.7901 45 1 8.3004 3.9211 6.0725 46 1 9.0060 2.3749 6.6014 47 1 10.4165 4.4081 7.6688 48 1 12.4038 6.0419 9.7951 49 1 5.6048 3.3012 4.4553 50 1 6.7071 3.3916 3.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713196786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:09 Heat of formation + Delta-G solvation = -108.473487 kcal Electronic energy + Delta-G solvation = -28821.628371 eV Core-core repulsion = 24655.847917 eV Total energy + Delta-G solvation = -4165.780454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.97809 -39.72103 -38.51962 -37.92340 -34.73326 -33.97939 -33.86068 -33.12717 -32.08078 -31.20574 -28.88202 -26.92347 -25.85048 -25.02118 -24.11393 -23.29140 -22.26510 -21.22024 -20.70165 -20.04894 -19.17481 -18.04007 -17.88047 -16.98735 -16.63599 -16.11127 -15.69272 -15.52920 -15.32589 -15.23108 -14.69081 -14.50867 -14.28167 -14.17274 -13.87601 -13.75313 -13.43447 -13.33662 -13.28228 -12.98667 -12.64274 -12.62204 -12.17591 -12.15051 -11.86886 -11.68556 -11.57900 -11.41758 -11.31177 -11.21412 -11.12530 -11.08581 -10.97377 -10.88923 -10.41079 -10.23816 -10.14022 -9.85749 -9.53159 -9.32133 -8.48188 -8.06185 -7.97699 -6.43707 -3.84698 2.21225 2.75219 3.16198 3.25084 3.30936 3.32796 3.88379 3.89902 4.07845 4.14184 4.21236 4.26523 4.42105 4.50039 4.57436 4.67451 4.69364 4.74719 4.81096 4.83646 4.95500 5.06908 5.15213 5.22258 5.25062 5.27361 5.38668 5.41833 5.51467 5.55804 5.56361 5.59879 5.67596 5.74664 5.77158 5.85102 5.86128 5.91048 5.98265 5.99595 6.22923 6.31478 6.59563 7.13460 7.21145 7.53182 7.60773 7.84701 8.04096 8.58903 9.15673 9.52091 10.03285 10.73939 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.001570 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.796015 B =17834.822069 C =18276.209918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.101 3.899 4 H 0.087 0.913 5 O -0.377 6.377 6 C 0.053 3.947 7 C -0.145 4.145 8 C -0.147 4.147 9 H 0.113 0.887 10 C 0.527 3.473 11 O -0.535 6.535 12 N -0.714 5.714 13 C 0.121 3.879 14 H 0.115 0.885 15 C -0.132 4.132 16 C 0.072 3.928 17 H 0.100 0.900 18 N -0.654 5.654 19 C 0.049 3.951 20 C 0.440 3.560 21 O -0.585 6.585 22 N -0.563 5.563 23 C -0.301 4.301 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.901 5.901 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.283 1.283 30 H -0.269 1.269 31 C -0.182 4.182 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.402 0.598 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.351 0.649 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.071 0.929 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.418 -9.263 -17.050 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.043 3.957 4 H 0.104 0.896 5 O -0.297 6.297 6 C -0.024 4.024 7 C -0.183 4.183 8 C -0.169 4.169 9 H 0.131 0.869 10 C 0.313 3.687 11 O -0.411 6.411 12 N -0.364 5.364 13 C 0.015 3.985 14 H 0.133 0.867 15 C -0.172 4.172 16 C -0.040 4.040 17 H 0.118 0.882 18 N -0.286 5.286 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.469 6.469 22 N -0.199 5.199 23 C -0.430 4.430 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.542 5.542 27 Si 0.758 3.242 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 C -0.222 4.222 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.237 0.763 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.171 0.829 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.369 -9.862 -16.890 28.239 hybrid contribution 0.640 1.372 0.379 1.561 sum -19.729 -8.490 -16.510 27.091 Atomic orbital electron populations 1.21693 0.94985 1.01574 1.02290 1.21645 0.97212 0.94312 1.02547 1.22872 0.91088 0.94931 0.86771 0.89563 1.88436 1.42470 1.60527 1.38222 1.23092 0.86990 0.94829 0.97456 1.23118 1.00826 0.95872 0.98512 1.23097 0.98974 1.00385 0.94436 0.86913 1.20148 0.82713 0.75635 0.90250 1.90719 1.51383 1.49144 1.49889 1.45997 1.07001 1.74669 1.08740 1.22487 0.96325 0.97474 0.82164 0.86689 1.23462 0.94152 0.99342 1.00198 1.22814 0.87476 0.95390 0.98349 0.88163 1.60008 1.24313 1.38819 1.05412 1.21721 0.96037 0.98192 0.92362 1.19824 0.88263 0.84203 0.85197 1.90517 1.62528 1.62937 1.30963 1.41867 1.16580 1.49524 1.11979 1.19708 0.92164 1.31812 0.99338 0.87918 1.25268 1.00039 0.97768 0.94841 1.69614 1.38332 1.44135 1.02162 0.85851 0.81622 0.79248 0.77527 1.20431 1.20901 1.19401 1.24277 0.99755 0.97412 1.00796 0.92742 0.92613 0.92146 0.91408 0.90476 0.90904 0.91025 0.89853 0.89027 0.76344 0.89013 0.90537 0.82854 0.93747 0.89524 0.77440 0.91852 0.91026 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.85 37.16 0.37 -0.75 16 2 C -0.12 -0.94 5.66 -26.73 -0.15 -1.09 16 3 C 0.10 0.87 2.55 -25.70 -0.07 0.80 16 4 H 0.09 0.90 7.38 -51.93 -0.38 0.52 16 5 O -0.38 -3.41 10.81 -35.23 -0.38 -3.79 16 6 C 0.05 0.33 7.79 37.88 0.30 0.63 16 7 C -0.15 -0.82 6.49 -24.78 -0.16 -0.98 16 8 C -0.15 -1.02 2.90 -89.52 -0.26 -1.28 16 9 H 0.11 0.60 8.06 -51.93 -0.42 0.18 16 10 C 0.53 4.85 7.15 -10.99 -0.08 4.77 16 11 O -0.53 -6.92 15.32 5.56 0.09 -6.83 16 12 N -0.71 -5.48 5.36 -52.93 -0.28 -5.77 16 13 C 0.12 1.09 4.24 -67.02 -0.28 0.80 16 14 H 0.12 1.17 7.47 -51.93 -0.39 0.78 16 15 C -0.13 -1.23 7.63 -25.92 -0.20 -1.43 16 16 C 0.07 0.80 4.16 -66.90 -0.28 0.52 16 17 H 0.10 1.07 7.88 -51.93 -0.41 0.66 16 18 N -0.65 -9.89 6.24 -107.13 -0.67 -10.56 16 19 C 0.05 0.84 6.02 -4.98 -0.03 0.81 16 20 C 0.44 10.22 7.82 -10.99 -0.09 10.14 16 21 O -0.59 -15.66 15.78 5.55 0.09 -15.57 16 22 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 23 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 24 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 27 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 31 C -0.18 -1.80 7.52 -25.83 -0.19 -2.00 16 32 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.48 7.99 -51.93 -0.42 0.06 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.08 0.54 8.03 -51.93 -0.42 0.12 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.40 2.19 8.73 -40.82 -0.36 1.83 16 42 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.35 5.47 7.91 -39.29 -0.31 5.16 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 0.86 7.83 -51.93 -0.41 0.45 16 LS Contribution 409.97 15.07 6.18 6.18 Total: -1.00 -33.13 409.97 -9.11 -42.24 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -8.41 Total: 13.11 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.37 Total: 2.97 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.29 Total: -54.19 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.21 Total: -26.19 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.13 -9.11 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713196786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.229 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds