Wall clock time and date at job start Wed Apr 1 2020 00:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 H 1.08999 * 109.47229 * 305.00584 * 3 2 1 5 5 C 1.50694 * 109.47176 * 185.00361 * 3 2 1 6 6 O 1.21286 * 120.00081 * 240.00371 * 5 3 2 7 7 N 1.34779 * 120.00295 * 60.00048 * 5 3 2 8 8 C 1.46498 * 120.00634 * 180.02562 * 7 5 3 9 9 C 1.52992 * 109.47314 * 180.02562 * 8 7 5 10 10 H 1.09008 * 109.51128 * 305.09583 * 9 8 7 11 11 C 1.53304 * 109.51007 * 185.00152 * 9 8 7 12 12 N 1.47151 * 108.38039 * 187.77264 * 11 9 8 13 13 C 1.36935 * 120.98299 * 230.55382 * 12 11 9 14 14 H 1.08002 * 120.00038 * 26.58729 * 13 12 11 15 15 C 1.38810 * 120.00512 * 206.59532 * 13 12 11 16 16 N 1.31628 * 119.99850 * 17.01825 * 15 13 12 17 17 Si 1.86800 * 120.00169 * 197.02707 * 15 13 12 18 18 H 1.48497 * 109.47187 * 94.14804 * 17 15 13 19 19 H 1.48503 * 109.46737 * 214.14568 * 17 15 13 20 20 H 1.48503 * 109.47029 * 334.14303 * 17 15 13 21 21 C 1.47152 * 118.03828 * 50.53444 * 12 11 9 22 22 C 1.53297 * 108.38293 * 309.46395 * 21 12 11 23 23 O 1.42956 * 109.22273 * 52.30300 * 22 21 12 24 24 N 1.46501 * 109.47177 * 65.00418 * 3 2 1 25 25 C 1.46817 * 124.33613 * 239.93778 * 24 3 2 26 26 C 1.54482 * 105.44537 * 196.99818 * 25 24 3 27 27 C 1.54629 * 101.79878 * 334.62414 * 26 25 24 28 28 C 1.34419 * 124.34590 * 59.96895 * 24 3 2 29 29 O 1.21279 * 124.94513 * 359.55955 * 28 24 3 30 30 H 1.08998 * 109.47379 * 59.99258 * 1 2 3 31 31 H 1.08992 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46600 * 299.99636 * 1 2 3 33 33 H 1.09002 * 109.46600 * 240.00364 * 2 1 3 34 34 H 1.08995 * 109.46884 * 120.00664 * 2 1 3 35 35 H 0.97003 * 119.99614 * 359.97438 * 7 5 3 36 36 H 1.09001 * 109.46623 * 300.00308 * 8 7 5 37 37 H 1.09005 * 109.46554 * 59.99816 * 8 7 5 38 38 H 1.08996 * 109.67627 * 307.49211 * 11 9 8 39 39 H 1.08994 * 109.68223 * 68.01348 * 11 9 8 40 40 H 0.96995 * 119.99492 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.68406 * 69.18641 * 21 12 11 42 42 H 1.09004 * 109.68314 * 189.70166 * 21 12 11 43 43 H 1.09005 * 109.50912 * 172.22907 * 22 21 12 44 44 H 1.09000 * 109.51039 * 292.37618 * 22 21 12 45 45 H 1.08999 * 110.24205 * 78.01511 * 25 24 3 46 46 H 1.09007 * 110.28118 * 315.99740 * 25 24 3 47 47 H 1.09001 * 110.96701 * 216.49027 * 26 25 24 48 48 H 1.08996 * 110.97269 * 92.76340 * 26 25 24 49 49 H 1.09000 * 110.48347 * 143.45229 * 27 26 25 50 50 H 1.08997 * 110.48790 * 265.97648 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 8 4.2217 1.9434 0.7477 7 7 4.1298 0.8911 -1.2033 8 6 5.5898 0.8923 -1.3235 9 6 5.9944 0.2090 -2.6312 10 1 5.5548 -0.7876 -2.6724 11 6 7.5219 0.0980 -2.6996 12 7 7.8923 -0.3874 -4.0385 13 6 8.7417 -1.4504 -4.1928 14 1 8.8158 -2.1993 -3.4182 15 6 9.5075 -1.5654 -5.3448 16 7 9.6818 -0.5206 -6.1263 17 14 10.2906 -3.2029 -5.7862 18 1 9.3967 -3.9460 -6.7102 19 1 11.5983 -2.9637 -6.4481 20 1 10.4995 -4.0006 -4.5511 21 6 7.3228 0.3029 -5.2066 22 6 5.8051 0.4039 -5.0160 23 8 5.5287 0.9837 -3.7388 24 7 1.6526 2.0974 1.2519 25 6 0.8085 3.2960 1.3326 26 6 1.0299 3.8601 2.7536 27 6 1.4532 2.5940 3.5340 28 6 2.0247 1.6786 2.4737 29 8 2.7173 0.7077 2.6942 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.5861 0.4915 -1.9002 36 1 5.9535 1.9199 -1.3232 37 1 6.0241 0.3529 -0.4817 38 1 7.9691 1.0770 -2.5273 39 1 7.8731 -0.6043 -1.9437 40 1 10.2167 -0.6011 -6.9314 41 1 7.7501 1.3025 -5.2867 42 1 7.5428 -0.2639 -6.1113 43 1 5.3807 1.0309 -5.8001 44 1 5.3648 -0.5919 -5.0668 45 1 -0.2390 3.0297 1.1914 46 1 1.1169 4.0264 0.5846 47 1 0.1064 4.2759 3.1565 48 1 1.8254 4.6052 2.7580 49 1 2.2131 2.8395 4.2759 50 1 0.5887 2.1339 4.0124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714481696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:55 Heat of formation + Delta-G solvation = -113.592037 kcal Electronic energy + Delta-G solvation = -30618.556198 eV Core-core repulsion = 26452.553786 eV Total energy + Delta-G solvation = -4166.002411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.87233 -40.53591 -39.80497 -37.39518 -36.53663 -35.95948 -35.70056 -33.39013 -32.37187 -31.88391 -29.49171 -28.48228 -28.32414 -26.68044 -24.98661 -23.55112 -23.25456 -22.70269 -22.06832 -21.41787 -20.03924 -18.93206 -18.38509 -17.94824 -17.59174 -17.39576 -16.98156 -16.69951 -16.22770 -16.13346 -15.75831 -15.52494 -15.32152 -15.31368 -15.04580 -14.64718 -14.55765 -14.53198 -14.33143 -13.98008 -13.78306 -13.49286 -13.28856 -13.24278 -13.04416 -12.94714 -12.72008 -12.56090 -12.40140 -12.19149 -12.13708 -12.09782 -11.96283 -11.90420 -11.81459 -11.37368 -11.03777 -10.82579 -10.64296 -10.57421 -10.16349 -9.66347 -8.78497 -7.94195 -5.42139 1.45268 1.45889 1.53367 1.55902 1.58161 1.94794 2.28264 2.46560 2.73718 3.20577 3.42449 3.46019 3.65028 3.71299 3.84605 3.94666 3.97602 4.01699 4.10445 4.19896 4.23139 4.37073 4.44492 4.48620 4.50156 4.58464 4.67903 4.69118 4.70515 4.73234 4.80900 4.86997 4.90291 5.01682 5.05590 5.10422 5.15456 5.21020 5.25627 5.33785 5.36047 5.52789 5.57870 5.58736 6.20177 6.22392 6.29924 6.48786 7.03505 7.16115 7.29710 7.70730 8.24583 9.11850 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.002214 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.515746 B =12644.876938 C =12719.996566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.146 3.854 4 H 0.151 0.849 5 C 0.495 3.505 6 O -0.573 6.573 7 N -0.709 5.709 8 C 0.144 3.856 9 C 0.083 3.917 10 H 0.070 0.930 11 C 0.116 3.884 12 N -0.612 5.612 13 C -0.268 4.268 14 H 0.070 0.930 15 C -0.049 4.049 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.281 1.281 19 H -0.295 1.295 20 H -0.269 1.269 21 C 0.142 3.858 22 C 0.054 3.946 23 O -0.387 6.387 24 N -0.606 5.606 25 C 0.097 3.903 26 C -0.121 4.121 27 C -0.152 4.152 28 C 0.507 3.493 29 O -0.578 6.578 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.415 0.585 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.016 0.984 39 H 0.067 0.933 40 H 0.252 0.748 41 H -0.001 1.001 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.053 0.947 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.125 0.875 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.027 7.758 12.072 30.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.039 3.961 4 H 0.169 0.831 5 C 0.281 3.719 6 O -0.451 6.451 7 N -0.362 5.362 8 C 0.019 3.981 9 C 0.024 3.976 10 H 0.088 0.912 11 C -0.010 4.010 12 N -0.337 5.337 13 C -0.398 4.398 14 H 0.088 0.912 15 C -0.245 4.245 16 N -0.580 5.580 17 Si 0.800 3.200 18 H -0.207 1.207 19 H -0.222 1.222 20 H -0.194 1.194 21 C 0.017 3.983 22 C -0.023 4.023 23 O -0.306 6.306 24 N -0.340 5.340 25 C -0.024 4.024 26 C -0.158 4.158 27 C -0.192 4.192 28 C 0.296 3.704 29 O -0.457 6.457 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.034 0.966 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.017 0.983 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.106 0.894 47 H 0.143 0.857 48 H 0.093 0.907 49 H 0.111 0.889 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.155 7.772 12.628 30.067 hybrid contribution 1.527 -1.134 -0.811 2.068 sum -24.629 6.638 11.817 28.112 Atomic orbital electron populations 1.21664 0.92324 1.02643 1.02841 1.21868 0.98925 0.93157 1.03164 1.21021 0.89097 0.97028 0.88995 0.83132 1.21610 0.92175 0.77191 0.80956 1.90695 1.66457 1.46806 1.41158 1.45759 1.07201 1.60066 1.23152 1.21083 0.81022 1.00922 0.95025 1.22569 0.94687 0.94490 0.85881 0.91215 1.21585 0.93523 0.97492 0.88416 1.44347 1.52976 1.35833 1.00546 1.19543 1.16491 0.99237 1.04500 0.91208 1.25845 0.98451 1.00478 0.99692 1.70196 1.42596 1.29316 1.15934 0.85182 0.77150 0.79490 0.78181 1.20731 1.22157 1.19395 1.21333 0.91003 0.94587 0.91403 1.23176 0.95757 0.98503 0.84892 1.87795 1.79515 1.48942 1.14328 1.48154 1.50952 1.30365 1.04481 1.22478 0.95456 0.85259 0.99196 1.22629 1.04417 0.95654 0.93147 1.22362 1.03359 0.96436 0.97006 1.21615 0.78301 0.84661 0.85788 1.90671 1.39529 1.30859 1.84648 0.90160 0.92019 0.92809 0.89114 0.93349 0.74809 0.92124 0.90703 0.96601 0.91408 0.93851 0.98318 0.91404 0.86968 0.92915 0.87780 0.89437 0.85660 0.90687 0.88927 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.80 71.98 0.71 -0.80 16 2 C -0.13 -2.27 5.30 30.60 0.16 -2.11 16 3 C 0.15 2.70 2.67 44.24 0.12 2.82 16 4 H 0.15 1.63 8.07 -2.39 -0.02 1.61 16 5 C 0.49 13.93 6.86 87.65 0.60 14.53 16 6 O -0.57 -21.78 14.90 10.90 0.16 -21.62 16 7 N -0.71 -18.33 5.37 -463.07 -2.49 -20.81 16 8 C 0.14 4.52 5.34 86.38 0.46 4.98 16 9 C 0.08 2.85 2.81 30.69 0.09 2.94 16 10 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 11 C 0.12 4.97 6.02 86.36 0.52 5.49 16 12 N -0.61 -31.12 3.05 -697.53 -2.13 -33.24 16 13 C -0.27 -14.76 9.64 84.03 0.81 -13.95 16 14 H 0.07 3.75 7.89 -2.91 -0.02 3.72 16 15 C -0.05 -2.72 4.94 84.86 0.42 -2.30 16 16 N -0.93 -55.03 11.18 21.65 0.24 -54.79 16 17 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 C 0.14 6.82 5.44 86.35 0.47 7.29 16 22 C 0.05 1.95 6.98 72.08 0.50 2.46 16 23 O -0.39 -13.57 10.33 -148.98 -1.54 -15.11 16 24 N -0.61 -11.17 2.08 -798.06 -1.66 -12.83 16 25 C 0.10 0.83 7.31 86.82 0.63 1.47 16 26 C -0.12 -0.91 7.18 31.65 0.23 -0.68 16 27 C -0.15 -2.16 6.86 30.59 0.21 -1.95 16 28 C 0.51 12.63 6.68 87.90 0.59 13.22 16 29 O -0.58 -20.87 15.35 10.92 0.17 -20.70 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.61 7.75 -2.39 -0.02 0.59 16 33 H 0.09 1.30 7.43 -2.39 -0.02 1.29 16 34 H 0.05 1.22 6.62 -2.39 -0.02 1.21 16 35 H 0.41 8.40 7.83 -92.71 -0.73 7.68 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 2.80 7.96 -2.39 -0.02 2.78 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.07 3.59 6.17 -2.39 -0.01 3.58 16 43 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 47 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -82.59 397.15 1.51 -81.08 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.20 Total: 18.09 kcal Atomic # 6 Polarization: 26.88 SS G_CDS: 6.52 Total: 33.40 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -6.03 Total: -121.68 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -1.21 Total: -57.43 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -82.59 1.51 -81.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714481696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.512 kcal (2) G-P(sol) polarization free energy of solvation -82.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds