Wall clock time and date at job start Wed Apr 1 2020 00:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47567 * 2 1 4 4 H 1.09004 * 109.46554 * 54.99246 * 3 2 1 5 5 C 1.50694 * 109.47572 * 174.99596 * 3 2 1 6 6 O 1.21280 * 119.99717 * 119.99680 * 5 3 2 7 7 N 1.34772 * 120.00356 * 300.00610 * 5 3 2 8 8 C 1.46495 * 120.00414 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47434 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.50873 * 304.89675 * 9 8 7 11 11 C 1.53296 * 109.51495 * 184.74654 * 9 8 7 12 12 N 1.47154 * 108.38715 * 187.77225 * 11 9 8 13 13 C 1.36937 * 120.98345 * 230.51316 * 12 11 9 14 14 H 1.08003 * 119.99550 * 26.25106 * 13 12 11 15 15 C 1.38807 * 119.99870 * 206.24972 * 13 12 11 16 16 N 1.31617 * 120.00438 * 16.90589 * 15 13 12 17 17 Si 1.86806 * 119.99664 * 196.90891 * 15 13 12 18 18 H 1.48497 * 109.47604 * 59.99816 * 17 15 13 19 19 H 1.48499 * 109.46798 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47214 * 299.99492 * 17 15 13 21 21 C 1.47153 * 118.03334 * 50.53521 * 12 11 9 22 22 C 1.53300 * 108.38289 * 309.46525 * 21 12 11 23 23 O 1.42957 * 109.51488 * 64.99990 * 9 8 7 24 24 N 1.46497 * 109.46777 * 295.00202 * 3 2 1 25 25 C 1.46763 * 124.35134 * 119.72376 * 24 3 2 26 26 C 1.54661 * 105.38636 * 162.85093 * 25 24 3 27 27 C 1.54638 * 101.68294 * 25.76593 * 26 25 24 28 28 C 1.34425 * 124.35098 * 300.01829 * 24 3 2 29 29 O 1.21287 * 124.93761 * 0.38829 * 28 24 3 30 30 H 1.08995 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47182 * 300.00474 * 1 2 3 32 32 H 1.09002 * 109.46792 * 59.99982 * 1 2 3 33 33 H 1.09004 * 109.47587 * 240.00164 * 2 1 3 34 34 H 1.08995 * 109.47379 * 119.99715 * 2 1 3 35 35 H 0.97008 * 119.99944 * 359.97438 * 7 5 3 36 36 H 1.09006 * 109.46925 * 59.99263 * 8 7 5 37 37 H 1.09004 * 109.47116 * 300.00011 * 8 7 5 38 38 H 1.09004 * 109.68153 * 307.49922 * 11 9 8 39 39 H 1.09000 * 109.68215 * 68.04996 * 11 9 8 40 40 H 0.96992 * 120.00128 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.67912 * 189.74121 * 21 12 11 42 42 H 1.08999 * 109.71265 * 69.20374 * 21 12 11 43 43 H 1.09001 * 109.51134 * 292.37981 * 22 21 12 44 44 H 1.08998 * 109.50820 * 172.22722 * 22 21 12 45 45 H 1.09004 * 110.24582 * 281.98034 * 25 24 3 46 46 H 1.09007 * 110.24677 * 43.97839 * 25 24 3 47 47 H 1.09004 * 111.19307 * 267.59659 * 26 25 24 48 48 H 1.08997 * 110.85640 * 143.78900 * 26 25 24 49 49 H 1.08998 * 110.48730 * 216.31362 * 27 26 25 50 50 H 1.08995 * 110.48549 * 93.66321 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 8 4.2216 1.9435 -0.7477 7 7 4.1298 0.8911 1.2032 8 6 5.5898 0.8924 1.3234 9 6 5.9945 0.2089 2.6310 10 1 5.4910 0.6949 3.4668 11 6 7.5127 0.3142 2.8153 12 7 7.8976 -0.5065 3.9745 13 6 8.6805 0.0076 4.9734 14 1 8.6822 1.0704 5.1653 15 6 9.4718 -0.8373 5.7394 16 7 9.7352 -2.0555 5.3164 17 14 10.1628 -0.2453 7.3709 18 1 9.0457 0.1204 8.2783 19 1 10.9680 -1.3288 7.9897 20 1 11.0238 0.9427 7.1419 21 6 7.4166 -1.8962 4.0282 22 6 5.9031 -1.8938 3.7848 23 8 5.6205 -1.1701 2.5848 24 7 1.6525 2.0975 -1.2518 25 6 0.8029 3.2914 -1.3332 26 6 1.0295 3.8602 -2.7535 27 6 1.4530 2.5941 -3.5339 28 6 2.0246 1.6788 -2.4738 29 8 2.7182 0.7085 -2.6942 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5861 0.4921 1.9004 36 1 5.9535 1.9200 1.3231 37 1 6.0241 0.3531 0.4815 38 1 8.0173 -0.0530 1.9216 39 1 7.7897 1.3533 2.9931 40 1 10.2884 -2.6457 5.8515 41 1 7.6301 -2.3208 5.0091 42 1 7.9115 -2.4866 3.2570 43 1 5.4000 -1.4157 4.6253 44 1 5.5491 -2.9196 3.6833 45 1 -0.2437 3.0198 -1.1953 46 1 1.1059 4.0219 -0.5829 47 1 1.8253 4.6052 -2.7573 48 1 0.1063 4.2764 -3.1567 49 1 2.2128 2.8397 -4.2759 50 1 0.5881 2.1326 -4.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714481698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:00 Heat of formation + Delta-G solvation = -88.021526 kcal Electronic energy + Delta-G solvation = -30653.322004 eV Core-core repulsion = 26488.428413 eV Total energy + Delta-G solvation = -4164.893591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.99524 -39.29682 -38.35743 -36.48307 -35.12023 -34.87580 -34.26185 -31.57914 -31.25078 -30.68173 -28.12426 -27.77250 -27.04421 -25.16463 -23.19201 -22.57103 -22.19831 -21.92234 -20.92912 -19.78590 -19.03203 -17.50005 -17.09365 -16.90695 -16.70075 -16.01986 -15.63163 -15.16482 -14.98282 -14.84397 -14.53228 -14.39830 -14.14501 -13.86049 -13.79172 -13.63303 -13.35898 -13.18619 -13.13276 -12.87519 -12.81450 -12.71035 -12.34527 -12.09876 -11.86069 -11.56075 -11.46466 -11.36499 -11.22616 -11.13364 -10.85335 -10.74082 -10.41407 -10.30400 -10.01115 -9.95452 -9.71976 -9.66736 -9.08688 -8.94011 -8.83714 -8.55467 -6.77184 -5.85785 -3.29620 2.43696 2.65654 2.73062 3.32406 3.34109 3.39678 3.40521 4.09602 4.15590 4.23704 4.41532 4.47251 4.57552 4.62148 4.68442 4.80144 4.97725 5.09215 5.12870 5.16446 5.22070 5.31617 5.36983 5.41329 5.49493 5.50996 5.52032 5.64625 5.66431 5.79335 5.80517 5.86174 5.97789 6.04020 6.15500 6.28613 6.29262 6.35873 6.47852 6.55256 6.75251 6.96714 7.09278 7.50484 7.56163 7.68549 7.85057 8.11610 8.30327 8.31932 9.09638 9.72340 10.29402 11.22348 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.002231 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.940789 B =12548.607783 C =12871.136100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.145 3.855 4 H 0.112 0.888 5 C 0.501 3.499 6 O -0.524 6.524 7 N -0.718 5.718 8 C 0.132 3.868 9 C 0.066 3.934 10 H 0.058 0.942 11 C 0.122 3.878 12 N -0.594 5.594 13 C -0.257 4.257 14 H 0.068 0.932 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.906 3.094 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.139 3.861 22 C 0.040 3.960 23 O -0.389 6.389 24 N -0.607 5.607 25 C 0.105 3.895 26 C -0.130 4.130 27 C -0.154 4.154 28 C 0.525 3.475 29 O -0.514 6.514 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.256 0.744 41 H 0.094 0.906 42 H 0.028 0.972 43 H 0.040 0.960 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.677 9.602 -11.112 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.038 3.962 4 H 0.130 0.870 5 C 0.284 3.716 6 O -0.399 6.399 7 N -0.371 5.371 8 C 0.008 3.992 9 C 0.006 3.994 10 H 0.076 0.924 11 C -0.006 4.006 12 N -0.318 5.318 13 C -0.386 4.386 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.736 3.264 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.208 1.208 21 C 0.013 3.987 22 C -0.038 4.038 23 O -0.308 6.308 24 N -0.342 5.342 25 C -0.018 4.018 26 C -0.168 4.168 27 C -0.195 4.195 28 C 0.313 3.687 29 O -0.388 6.388 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.236 0.764 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.119 0.881 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.715 9.201 -11.879 27.234 hybrid contribution 0.383 0.161 1.569 1.623 sum -22.332 9.362 -10.309 26.318 Atomic orbital electron populations 1.21704 0.94691 1.02110 1.01673 1.21916 0.96930 0.94092 1.04705 1.20862 0.92248 0.95735 0.87372 0.87048 1.20751 0.90318 0.78576 0.81927 1.90713 1.64984 1.44899 1.39343 1.45886 1.08219 1.59981 1.22976 1.21399 0.79335 1.00446 0.97978 1.22793 0.98089 0.83197 0.95297 0.92409 1.21442 0.90913 0.96495 0.91719 1.44065 1.58169 1.09411 1.20120 1.19152 1.18277 0.93007 1.08137 0.91391 1.25053 0.97376 0.96978 1.00232 1.70021 1.39587 1.07853 1.37205 0.86312 0.78627 0.77748 0.83737 1.20990 1.21540 1.20788 1.21447 0.88315 0.86265 1.02625 1.23322 0.99523 0.94970 0.85990 1.87802 1.83565 1.21143 1.38305 1.47909 1.51225 1.29816 1.05266 1.22129 0.94455 0.86692 0.98516 1.22608 1.03029 0.97215 0.93969 1.22313 1.03016 0.96011 0.98122 1.20733 0.79062 0.84947 0.83961 1.90734 1.36525 1.28060 1.83460 0.92183 0.92593 0.92757 0.89585 0.90002 0.76430 0.90289 0.90687 0.95216 0.91818 0.93412 0.88774 0.95358 0.94134 0.90041 0.90954 0.90483 0.89843 0.89265 0.88102 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.80 37.15 0.36 -0.67 16 2 C -0.14 -1.35 5.30 -26.73 -0.14 -1.49 16 3 C 0.14 1.48 2.67 -69.08 -0.18 1.30 16 4 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16 5 C 0.50 7.18 6.86 -10.99 -0.08 7.10 16 6 O -0.52 -9.73 14.89 -9.07 -0.14 -9.87 16 7 N -0.72 -9.69 5.36 -60.30 -0.32 -10.02 16 8 C 0.13 2.08 5.34 -4.05 -0.02 2.06 16 9 C 0.07 1.16 2.81 -26.58 -0.07 1.09 16 10 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 11 C 0.12 2.57 6.02 -3.53 -0.02 2.54 16 12 N -0.59 -14.90 3.05 -171.82 -0.52 -15.43 16 13 C -0.26 -6.97 9.65 -15.06 -0.15 -7.11 16 14 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 15 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 16 N -0.90 -26.01 11.14 55.49 0.62 -25.39 16 17 Si 0.91 21.38 29.59 -169.99 -5.03 16.35 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.14 3.32 5.44 -3.53 -0.02 3.30 16 22 C 0.04 0.76 6.98 37.31 0.26 1.02 16 23 O -0.39 -7.34 10.33 -35.23 -0.36 -7.70 16 24 N -0.61 -6.10 2.08 -166.04 -0.34 -6.45 16 25 C 0.11 0.62 7.31 -3.03 -0.02 0.60 16 26 C -0.13 -0.67 7.19 -25.00 -0.18 -0.85 16 27 C -0.15 -1.21 6.86 -26.74 -0.18 -1.39 16 28 C 0.53 6.64 6.68 -10.86 -0.07 6.57 16 29 O -0.51 -9.01 15.35 -9.07 -0.14 -9.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.40 7.75 -51.93 -0.40 -0.01 16 33 H 0.09 1.13 6.62 -51.93 -0.34 0.78 16 34 H 0.08 0.74 7.43 -51.93 -0.39 0.35 16 35 H 0.40 4.54 7.83 -40.82 -0.32 4.22 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 41 H 0.09 2.45 6.14 -51.93 -0.32 2.13 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 49 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -36.03 397.10 -9.35 -45.38 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.49 Total: 2.25 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -0.60 Total: 14.04 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.57 Total: -57.28 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.64 Total: -26.72 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.03 -9.35 -45.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714481698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.642 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds