Wall clock time and date at job start Tue Mar 31 2020 23:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 C 1.50704 * 109.47147 * 60.00186 * 4 2 1 6 6 O 1.21285 * 119.99661 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00430 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00388 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47508 * 179.97438 * 8 7 5 10 10 C 1.53934 * 113.72916 * 273.76516 * 9 8 7 11 11 N 1.48187 * 86.10110 * 221.95388 * 10 9 8 12 12 C 1.46897 * 111.07434 * 137.51941 * 11 10 9 13 13 C 1.50703 * 109.46865 * 70.56542 * 12 11 10 14 14 O 1.21295 * 120.00202 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99952 * 179.97438 * 13 12 11 16 16 C 1.37103 * 120.00199 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99589 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99990 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99532 * 180.02562 * 18 16 15 20 20 Si 1.86790 * 120.00192 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47600 * 89.99632 * 20 18 16 22 22 H 1.48507 * 109.47292 * 209.99885 * 20 18 16 23 23 H 1.48500 * 109.47275 * 329.99629 * 20 18 16 24 24 C 1.47961 * 90.79720 * 24.60170 * 11 10 9 25 25 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 26 26 C 1.53001 * 117.51964 * 231.28841 * 25 2 1 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 2 28 28 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 29 29 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 30 30 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 31 31 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 34 34 H 0.97001 * 119.99820 * 359.97438 * 7 5 4 35 35 H 1.09010 * 109.46997 * 299.99910 * 8 7 5 36 36 H 1.09003 * 109.47620 * 59.99463 * 8 7 5 37 37 H 1.09000 * 112.93667 * 45.32793 * 9 8 7 38 38 H 1.08993 * 113.76247 * 336.23442 * 10 9 8 39 39 H 1.08998 * 113.76140 * 107.60396 * 10 9 8 40 40 H 1.09002 * 109.47686 * 190.56745 * 12 11 10 41 41 H 1.09002 * 109.47316 * 310.57450 * 12 11 10 42 42 H 0.97007 * 120.00258 * 0.02562 * 15 13 12 43 43 H 0.97004 * 119.99941 * 180.02562 * 19 18 16 44 44 H 1.09003 * 113.75824 * 221.08802 * 24 11 10 45 45 H 1.08999 * 113.76136 * 89.72075 * 24 11 10 46 46 H 1.09002 * 115.54973 * 85.58625 * 25 2 1 47 47 H 1.09001 * 117.49733 * 214.97413 * 26 25 2 48 48 H 1.08995 * 117.49577 * 359.97438 * 26 25 2 49 49 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 50 50 H 1.09004 * 117.51638 * 107.47550 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3684 7 7 1.8630 -0.4716 -3.7037 8 6 1.3743 0.2186 -4.8999 9 6 1.8845 -0.5025 -6.1492 10 6 3.2825 -0.0438 -6.6017 11 7 2.7403 -0.0892 -7.9801 12 6 3.1765 1.0780 -8.7580 13 6 4.6497 0.9626 -9.0537 14 8 5.2747 0.0021 -8.6559 15 7 5.2726 1.9260 -9.7609 16 6 6.6130 1.8212 -10.0295 17 1 7.1696 0.9664 -9.6746 18 6 7.2552 2.8148 -10.7582 19 7 8.5399 2.7140 -11.0160 20 14 6.2927 4.2935 -11.3714 21 1 6.3292 5.3676 -10.3467 22 1 6.8997 4.7912 -12.6321 23 1 4.8838 3.8974 -11.6231 24 6 1.3651 0.0991 -7.4675 25 6 2.0400 -0.7212 1.2493 26 6 3.0757 0.0040 2.1109 27 6 1.6373 -0.1482 2.6097 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9702 1.4238 0.0004 32 1 3.1301 -0.7208 -1.2493 33 1 1.6767 -1.7489 -1.2492 34 1 2.4207 -1.2603 -3.7927 35 1 0.2842 0.2185 -4.8996 36 1 1.7375 1.2464 -4.9004 37 1 1.7764 -1.5854 -6.0885 38 1 3.5456 0.9592 -6.2662 39 1 4.0675 -0.7762 -6.4132 40 1 2.6201 1.1193 -9.6944 41 1 2.9911 1.9865 -8.1849 42 1 4.7727 2.6940 -10.0794 43 1 8.9884 3.4078 -11.5245 44 1 0.6209 -0.5193 -7.9692 45 1 1.0662 1.1441 -7.3856 46 1 2.1253 -1.8046 1.1648 47 1 3.8425 -0.6023 2.5932 48 1 3.3942 0.9949 1.7876 49 1 1.0093 0.7428 2.6145 50 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714963640.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:34 Heat of formation + Delta-G solvation = -84.197309 kcal Electronic energy + Delta-G solvation = -29149.473573 eV Core-core repulsion = 24984.745812 eV Total energy + Delta-G solvation = -4164.727760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.51138 -41.02039 -39.77921 -39.28370 -36.11703 -35.95244 -35.58446 -33.78802 -33.13265 -32.14838 -29.63543 -28.11023 -27.06478 -26.48089 -24.70391 -23.54307 -23.13947 -21.58506 -21.27436 -20.82412 -20.47885 -20.22216 -18.34007 -17.84853 -17.55305 -17.37630 -16.84480 -16.78327 -16.66797 -16.26179 -16.05522 -15.75233 -15.44671 -15.14802 -14.96241 -14.80026 -14.44648 -14.28765 -14.22834 -13.70453 -13.65478 -13.50497 -13.17677 -13.12318 -12.89711 -12.78806 -12.62670 -12.44762 -12.30335 -12.25354 -12.00000 -11.92413 -11.75423 -11.64844 -11.51238 -11.37124 -11.11723 -10.85252 -10.48830 -10.43001 -10.26727 -9.99806 -9.68232 -8.43273 -6.04058 1.28550 1.33419 1.42541 1.75384 1.92945 2.20867 2.21540 2.66895 2.85574 3.11871 3.14295 3.34152 3.46046 3.67134 3.69146 3.73568 3.99899 4.04922 4.08060 4.21116 4.24441 4.28110 4.32648 4.41425 4.42079 4.43376 4.51017 4.63713 4.64698 4.72924 4.80156 4.83789 4.87062 4.90144 4.94885 4.99344 5.13944 5.25821 5.27859 5.29920 5.37690 5.41761 5.51774 5.60968 5.89607 6.02302 6.57254 6.63245 6.85879 6.87948 7.37205 7.37956 7.93818 8.74282 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.001856 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.641286 B =15080.746657 C =15861.576962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.177 3.823 3 O -0.565 6.565 4 C -0.162 4.162 5 C 0.507 3.493 6 O -0.563 6.563 7 N -0.724 5.724 8 C 0.136 3.864 9 C -0.105 4.105 10 C 0.017 3.983 11 N -0.485 5.485 12 C 0.019 3.981 13 C 0.450 3.550 14 O -0.608 6.608 15 N -0.593 5.593 16 C -0.328 4.328 17 H 0.055 0.945 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.232 1.232 24 C 0.016 3.984 25 C -0.182 4.182 26 C -0.177 4.177 27 C -0.175 4.175 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.378 0.622 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.413 0.587 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.389 0.611 43 H 0.279 0.721 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.128 0.872 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.138 -6.177 22.502 30.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.136 3.864 3 O -0.373 6.373 4 C -0.202 4.202 5 C 0.295 3.705 6 O -0.442 6.442 7 N -0.377 5.377 8 C 0.012 3.988 9 C -0.124 4.124 10 C -0.112 4.112 11 N -0.208 5.208 12 C -0.113 4.113 13 C 0.238 3.762 14 O -0.492 6.492 15 N -0.234 5.234 16 C -0.457 4.457 17 H 0.074 0.926 18 C -0.214 4.214 19 N -0.574 5.574 20 Si 0.784 3.216 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.155 1.155 24 C -0.112 4.112 25 C -0.200 4.200 26 C -0.214 4.214 27 C -0.212 4.212 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.226 0.774 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.249 0.751 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.224 0.776 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.105 0.895 46 H 0.146 0.854 47 H 0.124 0.876 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.510 -6.454 22.289 30.970 hybrid contribution 1.208 1.199 -0.348 1.737 sum -19.303 -5.255 21.941 29.692 Atomic orbital electron populations 1.21933 0.93147 1.02570 1.02794 1.20386 0.94450 0.81062 0.90497 1.86691 1.26925 1.26847 1.96792 1.22443 1.04123 1.02159 0.91447 1.21014 0.79842 0.84339 0.85333 1.90691 1.38965 1.27585 1.86911 1.46008 1.53974 1.32529 1.05159 1.21243 0.99295 0.95341 0.82926 1.23133 0.94151 1.02041 0.93091 1.23875 0.97686 1.00550 0.89055 1.68441 1.05165 1.35607 1.11586 1.22455 0.91567 0.94997 1.02264 1.20867 0.90469 0.83281 0.81600 1.90533 1.68699 1.33918 1.56088 1.42068 1.08638 1.22122 1.50617 1.18995 0.84455 1.08182 1.34083 0.92645 1.26106 0.96789 1.01767 0.96713 1.69801 1.10969 1.36353 1.40265 0.85377 0.79724 0.77670 0.78844 1.18221 1.19904 1.15548 1.24078 0.91862 1.01923 0.93358 1.23080 1.04992 1.00373 0.91601 1.23048 0.92654 1.02326 1.03327 1.22899 0.98332 1.03070 0.96908 0.93052 0.91821 0.90109 0.77360 0.86664 0.85343 0.75060 0.90720 0.93027 0.86291 0.92247 0.91333 0.86368 0.89845 0.77571 0.91128 0.87103 0.89465 0.85397 0.87554 0.88577 0.89974 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.36 71.98 0.60 -1.96 16 2 C 0.18 2.58 0.79 -10.79 -0.01 2.57 16 3 O -0.57 -11.11 11.04 -131.53 -1.45 -12.56 16 4 C -0.16 -1.80 4.93 29.85 0.15 -1.65 16 5 C 0.51 9.38 7.39 87.66 0.65 10.03 16 6 O -0.56 -15.48 12.96 14.41 0.19 -15.29 16 7 N -0.72 -11.02 5.56 -463.05 -2.57 -13.59 16 8 C 0.14 2.36 5.51 86.38 0.48 2.84 16 9 C -0.11 -1.85 3.93 -10.15 -0.04 -1.89 16 10 C 0.02 0.47 6.33 86.37 0.55 1.02 16 11 N -0.49 -14.01 5.95 -911.74 -5.42 -19.43 16 12 C 0.02 0.58 5.31 85.56 0.45 1.03 16 13 C 0.45 20.51 7.59 87.66 0.67 21.17 16 14 O -0.61 -33.73 15.13 -3.08 -0.05 -33.78 16 15 N -0.59 -28.24 5.09 -306.98 -1.56 -29.80 16 16 C -0.33 -19.34 10.16 84.04 0.85 -18.48 16 17 H 0.06 3.89 7.39 -2.91 -0.02 3.86 16 18 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 19 N -0.93 -56.45 13.96 21.66 0.30 -56.15 16 20 Si 0.96 39.06 27.74 68.60 1.90 40.96 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 24 C 0.02 0.30 7.54 86.41 0.65 0.95 16 25 C -0.18 -1.88 5.15 -10.79 -0.06 -1.94 16 26 C -0.18 -1.80 9.74 30.59 0.30 -1.50 16 27 C -0.18 -2.04 9.67 30.60 0.30 -1.74 16 28 H 0.05 0.94 7.29 -2.39 -0.02 0.92 16 29 H 0.06 1.50 5.51 -2.39 -0.01 1.49 16 30 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.38 5.20 7.56 -74.06 -0.56 4.64 16 32 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.41 4.30 8.47 -92.71 -0.79 3.52 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 36 H 0.05 1.09 7.87 -2.39 -0.02 1.08 16 37 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.70 7.57 -2.39 -0.02 1.68 16 39 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 40 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.08 2.13 7.70 -2.39 -0.02 2.11 16 42 H 0.39 15.39 5.76 -92.70 -0.53 14.85 16 43 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.09 1.35 7.75 -2.39 -0.02 1.33 16 46 H 0.13 0.87 8.11 -2.39 -0.02 0.85 16 47 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.10 1.05 6.38 -2.39 -0.02 1.03 16 49 H 0.08 1.23 7.61 -2.39 -0.02 1.21 16 50 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -85.32 400.71 -3.62 -88.94 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -0.96 Total: 40.62 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.00 Total: 10.07 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -9.25 Total: -118.97 kcal Atomic # 8 Polarization: -60.32 SS G_CDS: -1.31 Total: -61.63 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.90 Total: 40.96 kcal Total: -85.32 -3.62 -88.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714963640.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.746 kcal (2) G-P(sol) polarization free energy of solvation -85.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds