Wall clock time and date at job start Tue Mar 31 2020 23:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 H 1.09005 * 110.41913 * 304.14912 * 3 2 1 5 5 C 1.54484 * 110.37448 * 181.83882 * 3 2 1 6 6 C 1.54506 * 104.06089 * 217.18922 * 5 3 2 7 7 C 1.54483 * 104.06450 * 359.97438 * 6 5 3 8 8 H 1.09000 * 110.46343 * 265.09582 * 7 6 5 9 9 C 1.50700 * 110.37518 * 142.81173 * 7 6 5 10 10 O 1.21279 * 119.99676 * 248.17007 * 9 7 6 11 11 N 1.34777 * 119.99967 * 68.16257 * 9 7 6 12 12 C 1.46498 * 120.00003 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47234 * 179.97438 * 12 11 9 14 14 C 1.53513 * 114.16624 * 174.99605 * 13 12 11 15 15 N 1.47483 * 87.92809 * 139.86554 * 14 13 12 16 16 C 1.46902 * 110.99811 * 221.29433 * 15 14 13 17 17 C 1.50702 * 109.47027 * 169.99675 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31414 * 120.00152 * 0.27554 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 180.27723 * 22 20 19 25 25 H 1.48504 * 109.47034 * 59.99919 * 24 22 20 26 26 H 1.48504 * 109.47036 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 299.99991 * 24 22 20 28 28 C 1.47476 * 87.83688 * 332.98604 * 15 14 13 29 29 O 1.44419 * 104.80384 * 23.97850 * 7 6 5 30 30 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47012 * 299.99945 * 1 2 3 32 32 H 1.09004 * 109.47253 * 59.99843 * 1 2 3 33 33 H 1.09002 * 109.47012 * 240.00055 * 2 1 3 34 34 H 1.08996 * 109.47550 * 120.00332 * 2 1 3 35 35 H 1.09001 * 110.50519 * 335.83453 * 5 3 2 36 36 H 1.09001 * 110.51306 * 98.40303 * 5 3 2 37 37 H 1.08998 * 110.51336 * 241.35320 * 6 5 3 38 38 H 1.09002 * 110.50909 * 118.64318 * 6 5 3 39 39 H 0.96998 * 119.99890 * 359.97438 * 11 9 7 40 40 H 1.09002 * 109.47237 * 59.99868 * 12 11 9 41 41 H 1.09007 * 109.46897 * 300.00254 * 12 11 9 42 42 H 1.08992 * 113.25300 * 42.05019 * 13 12 11 43 43 H 1.08994 * 113.48012 * 25.10153 * 14 13 12 44 44 H 1.08998 * 113.53188 * 254.63096 * 14 13 12 45 45 H 1.09004 * 109.47131 * 49.99918 * 16 15 14 46 46 H 1.08994 * 109.47471 * 289.99668 * 16 15 14 47 47 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 48 48 H 0.96991 * 119.99827 * 179.97438 * 23 22 20 49 49 H 1.09005 * 113.47915 * 141.77773 * 28 15 14 50 50 H 1.09003 * 113.48207 * 272.24610 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6261 1.9922 -0.8454 5 6 3.5839 1.4671 -0.0465 6 6 3.9679 2.6571 0.8610 7 6 2.6105 3.2112 1.3479 8 1 2.2836 4.0328 0.7106 9 6 2.7138 3.6686 2.7801 10 8 2.1244 3.0671 3.6528 11 7 3.4614 4.7461 3.0911 12 6 3.5623 5.1904 4.4834 13 6 4.4644 6.4237 4.5611 14 6 4.5487 7.0537 5.9585 15 7 5.9886 7.2638 5.7183 16 6 6.7736 6.9544 6.9208 17 6 8.2400 6.9410 6.5738 18 8 8.5963 7.1675 5.4367 19 7 9.1558 6.6773 7.5269 20 6 10.4898 6.6657 7.2113 21 1 10.8071 6.8682 6.1990 22 6 11.4342 6.3996 8.1952 23 7 11.0483 6.1537 9.4271 24 14 13.2525 6.3913 7.7669 25 1 13.6441 7.7254 7.2450 26 1 14.0462 6.0825 8.9834 27 1 13.5124 5.3590 6.7315 28 6 5.9474 6.1088 4.8023 29 8 1.6974 2.0975 1.2405 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.9927 0.5374 0.3494 36 1 3.9328 1.6331 -1.0657 37 1 4.5066 3.4140 0.2909 38 1 4.5666 2.3158 1.7056 39 1 3.9332 5.2268 2.3932 40 1 3.9875 4.3909 5.0901 41 1 2.5697 5.4417 4.8574 42 1 4.2848 7.1394 3.7590 43 1 4.3412 6.3506 6.7651 44 1 3.9844 7.9814 6.0524 45 1 6.4818 5.9762 7.3034 46 1 6.5872 7.7124 7.6815 47 1 8.8709 6.4965 8.4364 48 1 11.7075 5.9676 10.1138 49 1 6.5681 6.2356 3.9152 50 1 6.1130 5.1534 5.3003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714966508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:52 Heat of formation + Delta-G solvation = -88.067615 kcal Electronic energy + Delta-G solvation = -28952.062376 eV Core-core repulsion = 24787.166786 eV Total energy + Delta-G solvation = -4164.895589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.75395 -40.20862 -38.80967 -37.74546 -34.98320 -34.01205 -33.90902 -32.57117 -31.41226 -30.92980 -29.23131 -27.23272 -25.82707 -25.13553 -24.37797 -22.61934 -22.21154 -21.41127 -20.81436 -19.62018 -19.22537 -17.94034 -17.55366 -17.04036 -16.74480 -16.21252 -15.94249 -15.44055 -15.21693 -15.20867 -14.66984 -14.50960 -14.33140 -14.07633 -13.95248 -13.72231 -13.59481 -13.45323 -13.35397 -12.93030 -12.48736 -12.29027 -12.17354 -12.11735 -11.85053 -11.76289 -11.51099 -11.38992 -11.34946 -11.18776 -11.06859 -11.04144 -10.71953 -10.49104 -10.45396 -10.31203 -10.22576 -9.82723 -9.50998 -9.29853 -8.75619 -8.27507 -7.98033 -6.42978 -3.83990 2.35870 2.60159 3.18664 3.24573 3.28729 3.61064 3.87616 4.00871 4.04689 4.15437 4.22456 4.33174 4.42178 4.49063 4.66026 4.66637 4.72821 4.85532 4.89158 4.92835 5.07933 5.09369 5.21118 5.22524 5.32606 5.34073 5.38831 5.41915 5.52390 5.54118 5.55554 5.58867 5.62222 5.70647 5.72540 5.77146 5.79260 5.97025 6.00178 6.11679 6.23894 6.26309 6.39913 6.55382 7.17381 7.23703 7.53397 7.98007 8.03763 8.59783 9.16234 9.52429 10.04115 10.74670 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.001806 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.618193 B =15500.543255 C =16555.573465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.072 0.928 5 C -0.150 4.150 6 C -0.145 4.145 7 C 0.058 3.942 8 H 0.094 0.906 9 C 0.517 3.483 10 O -0.520 6.520 11 N -0.724 5.724 12 C 0.132 3.868 13 C -0.134 4.134 14 C 0.005 3.995 15 N -0.444 5.444 16 C 0.009 3.991 17 C 0.444 3.556 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.019 3.981 29 O -0.339 6.339 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.403 0.597 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.091 0.909 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.091 0.909 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.531 -7.509 -17.000 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.089 0.911 5 C -0.188 4.188 6 C -0.184 4.184 7 C -0.003 4.003 8 H 0.111 0.889 9 C 0.302 3.698 10 O -0.395 6.395 11 N -0.378 5.378 12 C 0.009 3.991 13 C -0.153 4.153 14 C -0.125 4.125 15 N -0.166 5.166 16 C -0.123 4.123 17 C 0.229 3.771 18 O -0.464 6.464 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.110 4.110 29 O -0.257 6.257 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.237 0.763 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.110 0.890 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.109 0.891 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.484 -7.257 -16.967 26.836 hybrid contribution 1.030 -0.532 0.473 1.252 sum -18.454 -7.790 -16.493 25.948 Atomic orbital electron populations 1.21732 0.95121 1.01677 1.02377 1.21586 0.96956 0.94062 1.02861 1.23146 0.93737 0.94503 0.87337 0.91058 1.23006 0.95894 0.99288 1.00594 1.22915 0.96250 0.98591 1.00596 1.22820 0.91125 0.92081 0.94297 0.88854 1.20197 0.79102 0.80323 0.90202 1.90740 1.44563 1.54657 1.49534 1.45889 1.50893 1.30641 1.10333 1.21385 1.00039 0.95703 0.82005 1.23062 0.95880 0.96952 0.99429 1.23843 0.92439 1.00638 0.95605 1.68826 1.02247 1.35585 1.09914 1.22495 0.94991 1.00717 0.94126 1.19663 0.86443 0.84547 0.86466 1.90513 1.81076 1.54106 1.20706 1.41864 1.06133 1.61570 1.10481 1.19645 0.80932 1.45217 0.97191 0.87998 1.25266 1.00648 0.97180 0.94819 1.69602 1.35462 1.47915 1.01290 0.85915 0.81687 0.78966 0.77622 1.19880 1.20954 1.19934 1.23781 0.94317 0.93657 0.99269 1.89278 1.54688 1.41620 1.40137 0.92685 0.91798 0.92902 0.90580 0.90885 0.90130 0.90034 0.89344 0.89895 0.76286 0.91126 0.90962 0.87376 0.91149 0.89409 0.92650 0.89044 0.77485 0.91800 0.89098 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.83 37.16 0.37 -0.68 16 2 C -0.12 -0.79 5.57 -26.73 -0.15 -0.94 16 3 C 0.07 0.52 3.27 -25.95 -0.08 0.43 16 4 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 5 C -0.15 -0.92 6.63 -25.16 -0.17 -1.09 16 6 C -0.15 -0.99 6.62 -25.16 -0.17 -1.16 16 7 C 0.06 0.51 3.71 -27.10 -0.10 0.41 16 8 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 9 C 0.52 5.91 7.07 -10.99 -0.08 5.83 16 10 O -0.52 -8.41 16.56 -13.63 -0.23 -8.63 16 11 N -0.72 -6.52 5.56 -60.29 -0.33 -6.86 16 12 C 0.13 1.32 5.59 -4.04 -0.02 1.30 16 13 C -0.13 -1.38 4.08 -90.09 -0.37 -1.75 16 14 C 0.00 0.05 7.29 -7.54 -0.05 0.00 16 15 N -0.44 -7.14 6.06 -246.08 -1.49 -8.63 16 16 C 0.01 0.15 5.31 -4.97 -0.03 0.13 16 17 C 0.44 10.49 7.62 -10.98 -0.08 10.41 16 18 O -0.58 -15.66 15.34 5.55 0.09 -15.58 16 19 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 23 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 24 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 28 C 0.02 0.27 6.29 -7.55 -0.05 0.22 16 29 O -0.34 -3.72 10.26 -54.42 -0.56 -4.27 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.56 7.91 -51.93 -0.41 0.15 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.51 7.87 -51.93 -0.41 0.11 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 39 H 0.40 2.57 8.47 -40.82 -0.35 2.22 16 40 H 0.07 0.81 7.82 -51.93 -0.41 0.40 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.88 7.56 -51.93 -0.39 0.49 16 46 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 50 H 0.07 0.98 7.45 -51.93 -0.39 0.59 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -35.30 408.93 -10.43 -45.74 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -8.49 Total: 9.18 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.22 Total: 5.09 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -1.16 Total: -53.70 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.70 Total: -28.48 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.30 -10.43 -45.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714966508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.330 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds