Wall clock time and date at job start Tue Mar 31 2020 23:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 H 1.09005 * 110.41913 * 304.14912 * 3 2 1 5 5 C 1.54484 * 110.37448 * 181.83882 * 3 2 1 6 6 C 1.54506 * 104.06089 * 217.18922 * 5 3 2 7 7 C 1.54483 * 104.06450 * 359.97438 * 6 5 3 8 8 H 1.09000 * 110.46343 * 265.09582 * 7 6 5 9 9 C 1.50700 * 110.37518 * 142.81173 * 7 6 5 10 10 O 1.21279 * 119.99676 * 248.17007 * 9 7 6 11 11 N 1.34777 * 119.99967 * 68.16257 * 9 7 6 12 12 C 1.46498 * 120.00003 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47234 * 179.97438 * 12 11 9 14 14 C 1.53513 * 114.16624 * 174.99605 * 13 12 11 15 15 N 1.47483 * 87.92809 * 139.86554 * 14 13 12 16 16 C 1.46902 * 110.99811 * 221.29433 * 15 14 13 17 17 C 1.50702 * 109.47027 * 169.99675 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31414 * 120.00152 * 0.27554 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 180.27723 * 22 20 19 25 25 H 1.48504 * 109.47034 * 59.99919 * 24 22 20 26 26 H 1.48504 * 109.47036 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 299.99991 * 24 22 20 28 28 C 1.47476 * 87.83688 * 332.98604 * 15 14 13 29 29 O 1.44419 * 104.80384 * 23.97850 * 7 6 5 30 30 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47012 * 299.99945 * 1 2 3 32 32 H 1.09004 * 109.47253 * 59.99843 * 1 2 3 33 33 H 1.09002 * 109.47012 * 240.00055 * 2 1 3 34 34 H 1.08996 * 109.47550 * 120.00332 * 2 1 3 35 35 H 1.09001 * 110.50519 * 335.83453 * 5 3 2 36 36 H 1.09001 * 110.51306 * 98.40303 * 5 3 2 37 37 H 1.08998 * 110.51336 * 241.35320 * 6 5 3 38 38 H 1.09002 * 110.50909 * 118.64318 * 6 5 3 39 39 H 0.96998 * 119.99890 * 359.97438 * 11 9 7 40 40 H 1.09002 * 109.47237 * 59.99868 * 12 11 9 41 41 H 1.09007 * 109.46897 * 300.00254 * 12 11 9 42 42 H 1.08992 * 113.25300 * 42.05019 * 13 12 11 43 43 H 1.08994 * 113.48012 * 25.10153 * 14 13 12 44 44 H 1.08998 * 113.53188 * 254.63096 * 14 13 12 45 45 H 1.09004 * 109.47131 * 49.99918 * 16 15 14 46 46 H 1.08994 * 109.47471 * 289.99668 * 16 15 14 47 47 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 48 48 H 0.96991 * 119.99827 * 179.97438 * 23 22 20 49 49 H 1.09005 * 113.47915 * 141.77773 * 28 15 14 50 50 H 1.09003 * 113.48207 * 272.24610 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6261 1.9922 -0.8454 5 6 3.5839 1.4671 -0.0465 6 6 3.9679 2.6571 0.8610 7 6 2.6105 3.2112 1.3479 8 1 2.2836 4.0328 0.7106 9 6 2.7138 3.6686 2.7801 10 8 2.1244 3.0671 3.6528 11 7 3.4614 4.7461 3.0911 12 6 3.5623 5.1904 4.4834 13 6 4.4644 6.4237 4.5611 14 6 4.5487 7.0537 5.9585 15 7 5.9886 7.2638 5.7183 16 6 6.7736 6.9544 6.9208 17 6 8.2400 6.9410 6.5738 18 8 8.5963 7.1675 5.4367 19 7 9.1558 6.6773 7.5269 20 6 10.4898 6.6657 7.2113 21 1 10.8071 6.8682 6.1990 22 6 11.4342 6.3996 8.1952 23 7 11.0483 6.1537 9.4271 24 14 13.2525 6.3913 7.7669 25 1 13.6441 7.7254 7.2450 26 1 14.0462 6.0825 8.9834 27 1 13.5124 5.3590 6.7315 28 6 5.9474 6.1088 4.8023 29 8 1.6974 2.0975 1.2405 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.9927 0.5374 0.3494 36 1 3.9328 1.6331 -1.0657 37 1 4.5066 3.4140 0.2909 38 1 4.5666 2.3158 1.7056 39 1 3.9332 5.2268 2.3932 40 1 3.9875 4.3909 5.0901 41 1 2.5697 5.4417 4.8574 42 1 4.2848 7.1394 3.7590 43 1 4.3412 6.3506 6.7651 44 1 3.9844 7.9814 6.0524 45 1 6.4818 5.9762 7.3034 46 1 6.5872 7.7124 7.6815 47 1 8.8709 6.4965 8.4364 48 1 11.7075 5.9676 10.1138 49 1 6.5681 6.2356 3.9152 50 1 6.1130 5.1534 5.3003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714966508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:51 Heat of formation + Delta-G solvation = -115.741544 kcal Electronic energy + Delta-G solvation = -28953.262407 eV Core-core repulsion = 24787.166786 eV Total energy + Delta-G solvation = -4166.095621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.67371 -41.19203 -39.79214 -39.40474 -36.07716 -35.80691 -34.58220 -33.36591 -33.17904 -32.16767 -30.03783 -28.37341 -26.90815 -26.69453 -25.29759 -23.77557 -22.81699 -21.97497 -21.64251 -21.03132 -20.56570 -19.90992 -18.41715 -17.84826 -17.71020 -17.45680 -16.87850 -16.66189 -16.49114 -16.35931 -16.08739 -15.71875 -15.56680 -15.19789 -14.83287 -14.73355 -14.52746 -14.35565 -14.22132 -14.01139 -13.70321 -13.52857 -13.46065 -13.08803 -12.89386 -12.85694 -12.70919 -12.46118 -12.40875 -12.35394 -12.14078 -11.92504 -11.83619 -11.72160 -11.56198 -11.53973 -11.46717 -11.01197 -10.64536 -10.35362 -10.17173 -10.03650 -9.78439 -8.48064 -5.97189 1.38502 1.40379 1.50107 1.51516 1.85374 2.02780 2.27591 2.85335 2.99252 3.18037 3.24118 3.41799 3.48523 3.61935 3.73028 3.89307 3.92744 4.12764 4.15381 4.17152 4.19104 4.28846 4.32688 4.37324 4.39362 4.48240 4.50511 4.56960 4.61543 4.69790 4.74277 4.83215 4.87966 4.88238 4.92667 5.00398 5.07615 5.13463 5.18145 5.21914 5.34547 5.38947 5.41510 5.41732 5.83130 5.89095 6.06814 6.48771 6.58056 7.10548 7.16840 7.53661 8.09123 8.69087 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.001806 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.618193 B =15500.543255 C =16555.573465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.065 3.935 4 H 0.090 0.910 5 C -0.147 4.147 6 C -0.143 4.143 7 C 0.058 3.942 8 H 0.125 0.875 9 C 0.513 3.487 10 O -0.577 6.577 11 N -0.710 5.710 12 C 0.137 3.863 13 C -0.102 4.102 14 C 0.009 3.991 15 N -0.473 5.473 16 C 0.021 3.979 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.011 3.989 29 O -0.376 6.376 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.062 0.938 39 H 0.418 0.582 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.109 0.891 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.069 0.931 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.944 -7.057 -18.395 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.008 3.992 4 H 0.108 0.892 5 C -0.184 4.184 6 C -0.181 4.181 7 C -0.003 4.003 8 H 0.142 0.858 9 C 0.299 3.701 10 O -0.455 6.455 11 N -0.363 5.363 12 C 0.013 3.987 13 C -0.121 4.121 14 C -0.120 4.120 15 N -0.195 5.195 16 C -0.111 4.111 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.212 5.212 20 C -0.465 4.465 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.118 4.118 29 O -0.295 6.295 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.255 0.745 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.145 0.855 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.093 0.907 46 H 0.127 0.873 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.897 -6.782 -18.370 27.917 hybrid contribution 1.116 -0.667 0.884 1.573 sum -18.781 -7.449 -17.486 26.721 Atomic orbital electron populations 1.21713 0.95399 1.01956 1.01676 1.21634 0.96741 0.94135 1.03079 1.23372 0.94661 0.94578 0.86631 0.89245 1.23026 0.94985 0.98634 1.01803 1.22949 0.95158 0.99629 1.00340 1.23001 0.92010 0.92644 0.92654 0.85781 1.20805 0.78200 0.79970 0.91078 1.90710 1.47042 1.56488 1.51296 1.45785 1.50083 1.30018 1.10459 1.21265 1.00005 0.94996 0.82406 1.22871 0.92690 0.96937 0.99598 1.23939 0.89484 1.02043 0.96511 1.68824 1.04708 1.36407 1.09551 1.22383 0.90784 1.02454 0.95444 1.20730 0.88711 0.82320 0.85502 1.90479 1.82397 1.55237 1.22260 1.41950 1.05868 1.62326 1.11025 1.19631 0.82679 1.47418 0.96729 0.90281 1.26061 1.04560 0.96130 0.94550 1.69667 1.36904 1.47701 1.01841 0.84980 0.76568 0.78905 0.77827 1.19668 1.19485 1.19653 1.23788 0.96851 0.92904 0.98234 1.89256 1.55658 1.42649 1.41977 0.91963 0.94326 0.91672 0.88231 0.92719 0.90896 0.87427 0.86469 0.91909 0.74475 0.92685 0.90381 0.85538 0.89930 0.87462 0.90695 0.87280 0.77073 0.91288 0.91227 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.83 71.98 0.71 -1.31 16 2 C -0.12 -1.51 5.57 30.59 0.17 -1.34 16 3 C 0.06 0.86 3.27 31.10 0.10 0.96 16 4 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 5 C -0.15 -1.53 6.63 31.61 0.21 -1.32 16 6 C -0.14 -1.71 6.62 31.61 0.21 -1.50 16 7 C 0.06 0.93 3.71 30.35 0.11 1.05 16 8 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 9 C 0.51 11.53 7.07 87.66 0.62 12.15 16 10 O -0.58 -19.16 16.56 15.32 0.25 -18.90 16 11 N -0.71 -11.85 5.56 -463.06 -2.57 -14.42 16 12 C 0.14 2.57 5.59 86.38 0.48 3.05 16 13 C -0.10 -1.89 4.08 -10.45 -0.04 -1.93 16 14 C 0.01 0.19 7.29 83.58 0.61 0.80 16 15 N -0.47 -14.62 6.06 -932.47 -5.65 -20.28 16 16 C 0.02 0.73 5.31 85.56 0.45 1.18 16 17 C 0.44 21.12 7.62 87.66 0.67 21.79 16 18 O -0.62 -34.21 15.34 -3.07 -0.05 -34.26 16 19 N -0.57 -29.78 5.29 -306.97 -1.62 -31.40 16 20 C -0.34 -19.15 9.68 84.04 0.81 -18.33 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.94 13.05 21.67 0.28 -49.66 16 24 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 C 0.01 0.32 6.29 83.58 0.53 0.84 16 29 O -0.38 -8.17 10.26 -130.63 -1.34 -9.51 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.70 7.91 -2.39 -0.02 0.68 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 36 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 1.01 7.87 -2.39 -0.02 0.99 16 39 H 0.42 4.41 8.47 -92.71 -0.79 3.63 16 40 H 0.05 1.24 7.82 -2.39 -0.02 1.22 16 41 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.08 1.54 7.73 -2.39 -0.02 1.52 16 44 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.08 2.29 7.56 -2.38 -0.02 2.27 16 46 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 47 H 0.40 19.52 7.90 -92.71 -0.73 18.78 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 49 H 0.07 2.23 8.13 -2.38 -0.02 2.21 16 50 H 0.06 1.73 7.45 -2.39 -0.02 1.71 16 Total: -1.00 -79.68 408.93 -3.13 -82.82 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -0.57 Total: 34.76 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.11 Total: 15.84 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -9.57 Total: -115.76 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -1.13 Total: -62.67 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -79.68 -3.13 -82.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714966508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.926 kcal (2) G-P(sol) polarization free energy of solvation -79.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds