Wall clock time and date at job start Tue Mar 31 2020 23:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08998 * 109.87167 * 54.00119 * 3 2 1 5 5 C 1.54105 * 109.87680 * 174.99970 * 3 2 1 6 6 C 1.54808 * 104.18884 * 121.45736 * 5 3 2 7 7 C 1.55001 * 102.09106 * 20.88053 * 6 5 3 8 8 H 1.08996 * 110.61470 * 81.48322 * 7 6 5 9 9 C 1.50705 * 110.61621 * 204.47754 * 7 6 5 10 10 O 1.21281 * 119.99817 * 115.00256 * 9 7 6 11 11 N 1.34776 * 120.00100 * 294.99814 * 9 7 6 12 12 C 1.46493 * 120.00020 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47019 * 180.02562 * 12 11 9 14 14 C 1.53937 * 113.73244 * 273.76640 * 13 12 11 15 15 N 1.48187 * 86.10113 * 221.95783 * 14 13 12 16 16 C 1.46897 * 111.06927 * 137.52372 * 15 14 13 17 17 C 1.50702 * 109.47396 * 70.56613 * 16 15 14 18 18 O 1.21294 * 119.99597 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00081 * 179.97438 * 17 16 15 20 20 C 1.37104 * 120.00070 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99566 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00273 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99838 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00059 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47105 * 89.99714 * 24 22 20 26 26 H 1.48492 * 109.47060 * 209.99494 * 24 22 20 27 27 H 1.48498 * 109.46968 * 330.00142 * 24 22 20 28 28 C 1.47959 * 90.80048 * 24.60316 * 15 14 13 29 29 O 1.43741 * 109.88396 * 292.83346 * 3 2 1 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 34 34 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 35 35 H 1.09001 * 110.49116 * 240.13250 * 5 3 2 36 36 H 1.09002 * 110.48754 * 2.64619 * 5 3 2 37 37 H 1.08997 * 110.91299 * 139.08104 * 6 5 3 38 38 H 1.09004 * 110.90706 * 262.65235 * 6 5 3 39 39 H 0.97000 * 119.99509 * 0.02562 * 11 9 7 40 40 H 1.09000 * 109.47716 * 300.00265 * 12 11 9 41 41 H 1.09008 * 109.46980 * 60.00702 * 12 11 9 42 42 H 1.08996 * 112.93835 * 45.33916 * 13 12 11 43 43 H 1.08994 * 113.76114 * 336.24146 * 14 13 12 44 44 H 1.08999 * 113.75542 * 107.60556 * 14 13 12 45 45 H 1.09000 * 109.47182 * 190.56266 * 16 15 14 46 46 H 1.09004 * 109.47350 * 310.56847 * 16 15 14 47 47 H 0.96996 * 120.00462 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99977 * 179.97438 * 23 22 20 49 49 H 1.08997 * 113.75913 * 221.08673 * 28 15 14 50 50 H 1.09001 * 113.75972 * 89.71208 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5953 1.9926 0.8293 5 6 3.5757 1.4554 0.1263 6 6 4.0545 2.2043 -1.1412 7 6 2.7840 2.9911 -1.5527 8 1 2.6915 3.9048 -0.9656 9 6 2.8088 3.3058 -3.0263 10 8 1.9788 2.8187 -3.7644 11 7 3.7533 4.1285 -3.5239 12 6 3.7777 4.4339 -4.9564 13 6 4.9400 5.3829 -5.2558 14 6 4.5901 6.8700 -5.0666 15 7 5.3487 7.1034 -6.3180 16 6 4.6492 8.0567 -7.1897 17 6 4.7165 9.4347 -6.5834 18 8 5.2912 9.6059 -5.5290 19 7 4.1391 10.4770 -7.2132 20 6 4.2008 11.7307 -6.6618 21 1 4.7117 11.8830 -5.7226 22 6 3.6050 12.8052 -7.3108 23 7 2.9829 12.6197 -8.4534 24 14 3.6885 14.5133 -6.5592 25 1 4.9042 15.2111 -7.0497 26 1 2.4824 15.2859 -6.9509 27 1 3.7454 14.4007 -5.0796 28 6 5.1033 5.7101 -6.7512 29 8 1.7083 2.0783 -1.2458 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.8802 1.9926 1.0246 36 1 3.9659 0.4377 0.1409 37 1 4.8735 2.8837 -0.9056 38 1 4.3469 1.5012 -1.9212 39 1 4.4172 4.5178 -2.9336 40 1 3.9072 3.5115 -5.5226 41 1 2.8386 4.9074 -5.2431 42 1 5.8681 5.0851 -4.7680 43 1 3.5249 7.0849 -5.1523 44 1 5.0463 7.3197 -4.1848 45 1 5.1240 8.0679 -8.1708 46 1 3.6066 7.7562 -7.2940 47 1 3.6799 10.3401 -8.0565 48 1 2.5667 13.3698 -8.9063 49 1 5.9688 5.2348 -7.2127 50 1 4.1885 5.5850 -7.3305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714966511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:04 Heat of formation + Delta-G solvation = -90.408073 kcal Electronic energy + Delta-G solvation = -28935.665368 eV Core-core repulsion = 24770.668289 eV Total energy + Delta-G solvation = -4164.997079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.72475 -40.05837 -38.82096 -37.70626 -34.95478 -33.99820 -33.89995 -32.60830 -31.38391 -30.87759 -29.20748 -27.19582 -25.99722 -25.09870 -24.33066 -22.60100 -22.35439 -21.31747 -20.80252 -19.59113 -19.20478 -17.92420 -17.53332 -17.14564 -16.62162 -16.20808 -15.95767 -15.54160 -15.30120 -15.09827 -14.63327 -14.62074 -14.22009 -13.95955 -13.91009 -13.79503 -13.64189 -13.44411 -13.25936 -12.91943 -12.51974 -12.34566 -12.19380 -12.10604 -11.90537 -11.73132 -11.50105 -11.46417 -11.34218 -11.21105 -11.07599 -11.01933 -10.66554 -10.61783 -10.40368 -10.23503 -10.21244 -9.81223 -9.51240 -9.29588 -8.66902 -8.24117 -7.97251 -6.42460 -3.83438 2.36059 2.59761 3.17071 3.25728 3.31312 3.57259 3.87767 3.97015 3.99911 4.15972 4.21105 4.35968 4.40704 4.44743 4.62184 4.66148 4.74090 4.84269 4.91038 4.93178 5.08194 5.10061 5.22189 5.24204 5.25659 5.34420 5.39868 5.40215 5.45159 5.53838 5.57519 5.59047 5.61903 5.72521 5.74279 5.80491 5.82755 5.99638 6.02054 6.13678 6.25219 6.29786 6.45620 6.60155 7.17707 7.24507 7.54161 7.98553 8.04707 8.60344 9.16942 9.53249 10.04768 10.75263 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.001737 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.006082 B =16112.429244 C =16743.001273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.072 3.928 4 H 0.072 0.928 5 C -0.151 4.151 6 C -0.144 4.144 7 C 0.058 3.942 8 H 0.098 0.902 9 C 0.518 3.482 10 O -0.520 6.520 11 N -0.723 5.723 12 C 0.130 3.870 13 C -0.134 4.134 14 C 0.026 3.974 15 N -0.454 5.454 16 C 0.010 3.990 17 C 0.443 3.557 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.009 3.991 29 O -0.341 6.341 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.403 0.597 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.091 0.909 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -24.596 13.931 28.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.014 3.986 4 H 0.090 0.910 5 C -0.189 4.189 6 C -0.182 4.182 7 C -0.003 4.003 8 H 0.115 0.885 9 C 0.303 3.697 10 O -0.395 6.395 11 N -0.377 5.377 12 C 0.006 3.994 13 C -0.153 4.153 14 C -0.103 4.103 15 N -0.176 5.176 16 C -0.122 4.122 17 C 0.229 3.771 18 O -0.464 6.464 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.195 1.195 28 C -0.121 4.121 29 O -0.259 6.259 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.237 0.763 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.870 -24.454 13.855 28.119 hybrid contribution -0.663 0.969 -0.046 1.175 sum 0.207 -23.485 13.809 27.245 Atomic orbital electron populations 1.21736 0.95133 1.01594 1.02471 1.21712 0.97082 0.94515 1.02552 1.22899 0.94092 0.94480 0.87153 0.91019 1.23022 0.95401 1.02135 0.98331 1.23101 0.96989 0.99713 0.98365 1.22979 0.88320 0.95345 0.93636 0.88477 1.20161 0.81272 0.78892 0.89424 1.90741 1.37875 1.50835 1.60043 1.45877 1.32647 1.49071 1.10109 1.21454 0.98691 0.98872 0.80384 1.23348 0.98625 0.95390 0.97954 1.23902 0.97644 0.92419 0.96293 1.68433 1.44439 1.01515 1.03236 1.22461 0.97527 0.94020 0.98191 1.19684 0.84691 0.85464 0.87286 1.90511 1.47140 1.84875 1.23919 1.41874 1.48730 1.06986 1.22488 1.19694 1.33157 0.83247 1.06811 0.87946 1.25263 0.96570 1.00197 0.95916 1.69613 1.36065 1.32821 1.15768 0.85855 0.77638 0.81407 0.79363 1.20379 1.20926 1.19454 1.23957 1.01488 0.91655 0.94987 1.89042 1.41177 1.56437 1.39242 0.92786 0.92880 0.91732 0.90810 0.91101 0.90148 0.89899 0.89179 0.89893 0.76306 0.91086 0.91130 0.87687 0.91429 0.88781 0.89124 0.92790 0.77489 0.91862 0.89078 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.83 37.16 0.37 -0.74 16 2 C -0.12 -0.81 5.42 -26.73 -0.14 -0.96 16 3 C 0.07 0.52 3.41 -26.15 -0.09 0.44 16 4 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -0.78 6.64 -25.20 -0.17 -0.95 16 6 C -0.14 -0.85 6.57 -24.72 -0.16 -1.01 16 7 C 0.06 0.51 3.76 -26.82 -0.10 0.41 16 8 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 9 C 0.52 5.96 7.21 -10.98 -0.08 5.88 16 10 O -0.52 -8.45 16.57 -13.51 -0.22 -8.67 16 11 N -0.72 -6.58 5.54 -60.29 -0.33 -6.91 16 12 C 0.13 1.31 5.51 -4.04 -0.02 1.29 16 13 C -0.13 -1.38 3.93 -89.68 -0.35 -1.73 16 14 C 0.03 0.38 6.33 -2.63 -0.02 0.36 16 15 N -0.45 -7.28 5.95 -239.52 -1.42 -8.70 16 16 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 17 C 0.44 10.49 7.59 -10.99 -0.08 10.41 16 18 O -0.58 -15.63 15.13 5.55 0.08 -15.54 16 19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.01 0.10 7.54 -2.76 -0.02 0.08 16 29 O -0.34 -3.77 10.12 -54.30 -0.55 -4.32 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.37 7.70 -51.93 -0.40 -0.03 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 39 H 0.40 2.61 8.47 -40.82 -0.35 2.26 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.83 7.88 -51.92 -0.41 0.42 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.02 7.57 -51.93 -0.39 0.63 16 44 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.05 0.87 7.70 -51.93 -0.40 0.47 16 47 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -35.36 408.93 -10.29 -45.65 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.50 Total: 8.98 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.14 Total: 5.60 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -1.09 Total: -53.94 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.69 Total: -28.53 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.36 -10.29 -45.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714966511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.757 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds