Wall clock time and date at job start Tue Mar 31 2020 23:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08998 * 109.87167 * 54.00119 * 3 2 1 5 5 C 1.54105 * 109.87680 * 174.99970 * 3 2 1 6 6 C 1.54808 * 104.18884 * 121.45736 * 5 3 2 7 7 C 1.55001 * 102.09106 * 20.88053 * 6 5 3 8 8 H 1.08996 * 110.61470 * 81.48322 * 7 6 5 9 9 C 1.50705 * 110.61621 * 204.47754 * 7 6 5 10 10 O 1.21281 * 119.99817 * 115.00256 * 9 7 6 11 11 N 1.34776 * 120.00100 * 294.99814 * 9 7 6 12 12 C 1.46493 * 120.00020 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47019 * 180.02562 * 12 11 9 14 14 C 1.53937 * 113.73244 * 273.76640 * 13 12 11 15 15 N 1.48187 * 86.10113 * 221.95783 * 14 13 12 16 16 C 1.46897 * 111.06927 * 137.52372 * 15 14 13 17 17 C 1.50702 * 109.47396 * 70.56613 * 16 15 14 18 18 O 1.21294 * 119.99597 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00081 * 179.97438 * 17 16 15 20 20 C 1.37104 * 120.00070 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99566 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00273 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99838 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00059 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47105 * 89.99714 * 24 22 20 26 26 H 1.48492 * 109.47060 * 209.99494 * 24 22 20 27 27 H 1.48498 * 109.46968 * 330.00142 * 24 22 20 28 28 C 1.47959 * 90.80048 * 24.60316 * 15 14 13 29 29 O 1.43741 * 109.88396 * 292.83346 * 3 2 1 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 34 34 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 35 35 H 1.09001 * 110.49116 * 240.13250 * 5 3 2 36 36 H 1.09002 * 110.48754 * 2.64619 * 5 3 2 37 37 H 1.08997 * 110.91299 * 139.08104 * 6 5 3 38 38 H 1.09004 * 110.90706 * 262.65235 * 6 5 3 39 39 H 0.97000 * 119.99509 * 0.02562 * 11 9 7 40 40 H 1.09000 * 109.47716 * 300.00265 * 12 11 9 41 41 H 1.09008 * 109.46980 * 60.00702 * 12 11 9 42 42 H 1.08996 * 112.93835 * 45.33916 * 13 12 11 43 43 H 1.08994 * 113.76114 * 336.24146 * 14 13 12 44 44 H 1.08999 * 113.75542 * 107.60556 * 14 13 12 45 45 H 1.09000 * 109.47182 * 190.56266 * 16 15 14 46 46 H 1.09004 * 109.47350 * 310.56847 * 16 15 14 47 47 H 0.96996 * 120.00462 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99977 * 179.97438 * 23 22 20 49 49 H 1.08997 * 113.75913 * 221.08673 * 28 15 14 50 50 H 1.09001 * 113.75972 * 89.71208 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5953 1.9926 0.8293 5 6 3.5757 1.4554 0.1263 6 6 4.0545 2.2043 -1.1412 7 6 2.7840 2.9911 -1.5527 8 1 2.6915 3.9048 -0.9656 9 6 2.8088 3.3058 -3.0263 10 8 1.9788 2.8187 -3.7644 11 7 3.7533 4.1285 -3.5239 12 6 3.7777 4.4339 -4.9564 13 6 4.9400 5.3829 -5.2558 14 6 4.5901 6.8700 -5.0666 15 7 5.3487 7.1034 -6.3180 16 6 4.6492 8.0567 -7.1897 17 6 4.7165 9.4347 -6.5834 18 8 5.2912 9.6059 -5.5290 19 7 4.1391 10.4770 -7.2132 20 6 4.2008 11.7307 -6.6618 21 1 4.7117 11.8830 -5.7226 22 6 3.6050 12.8052 -7.3108 23 7 2.9829 12.6197 -8.4534 24 14 3.6885 14.5133 -6.5592 25 1 4.9042 15.2111 -7.0497 26 1 2.4824 15.2859 -6.9509 27 1 3.7454 14.4007 -5.0796 28 6 5.1033 5.7101 -6.7512 29 8 1.7083 2.0783 -1.2458 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.8802 1.9926 1.0246 36 1 3.9659 0.4377 0.1409 37 1 4.8735 2.8837 -0.9056 38 1 4.3469 1.5012 -1.9212 39 1 4.4172 4.5178 -2.9336 40 1 3.9072 3.5115 -5.5226 41 1 2.8386 4.9074 -5.2431 42 1 5.8681 5.0851 -4.7680 43 1 3.5249 7.0849 -5.1523 44 1 5.0463 7.3197 -4.1848 45 1 5.1240 8.0679 -8.1708 46 1 3.6066 7.7562 -7.2940 47 1 3.6799 10.3401 -8.0565 48 1 2.5667 13.3698 -8.9063 49 1 5.9688 5.2348 -7.2127 50 1 4.1885 5.5850 -7.3305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714966511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:02 Heat of formation + Delta-G solvation = -118.009230 kcal Electronic energy + Delta-G solvation = -28936.862244 eV Core-core repulsion = 24770.668289 eV Total energy + Delta-G solvation = -4166.193955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57742 -41.11010 -39.80008 -39.35928 -36.06976 -35.78658 -34.57515 -33.35997 -33.17486 -32.09618 -30.00863 -28.34050 -27.06825 -26.69330 -25.23822 -23.70629 -22.95893 -21.84962 -21.64960 -21.01124 -20.54658 -19.90191 -18.39258 -17.85734 -17.81684 -17.32795 -16.78455 -16.71866 -16.54499 -16.32686 -16.17516 -15.71268 -15.53581 -15.16814 -14.92124 -14.56737 -14.48426 -14.36941 -14.20212 -13.96708 -13.70935 -13.54459 -13.43237 -13.08216 -12.94856 -12.85269 -12.70668 -12.45720 -12.44060 -12.32425 -12.13708 -11.98508 -11.76635 -11.72891 -11.66846 -11.50121 -11.48096 -10.95751 -10.60455 -10.34106 -10.17539 -10.03221 -9.68233 -8.48165 -5.97201 1.36744 1.40355 1.49835 1.53197 1.84959 2.03124 2.27540 2.81736 2.96179 3.18411 3.26194 3.42754 3.50740 3.62113 3.70513 3.87393 3.93857 4.11977 4.16137 4.19812 4.20506 4.29937 4.32583 4.38580 4.41002 4.50047 4.51799 4.60609 4.62668 4.69557 4.77598 4.85249 4.88506 4.89975 4.90830 5.01962 5.06572 5.16339 5.21568 5.25325 5.37102 5.39135 5.40670 5.43640 5.89012 5.89299 6.06975 6.48787 6.58125 7.10763 7.16672 7.54017 8.09340 8.69254 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.001737 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.006082 B =16112.429244 C =16743.001273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.062 3.938 4 H 0.079 0.921 5 C -0.144 4.144 6 C -0.137 4.137 7 C 0.055 3.945 8 H 0.116 0.884 9 C 0.514 3.486 10 O -0.577 6.577 11 N -0.709 5.709 12 C 0.135 3.865 13 C -0.102 4.102 14 C 0.018 3.982 15 N -0.481 5.481 16 C 0.022 3.978 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.014 3.986 29 O -0.379 6.379 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.418 0.582 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.126 0.874 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.112 0.888 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -25.457 14.867 29.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.005 3.995 4 H 0.097 0.903 5 C -0.182 4.182 6 C -0.175 4.175 7 C -0.006 4.006 8 H 0.134 0.866 9 C 0.301 3.699 10 O -0.456 6.456 11 N -0.363 5.363 12 C 0.011 3.989 13 C -0.121 4.121 14 C -0.111 4.111 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.115 4.115 29 O -0.299 6.299 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.255 0.745 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.144 0.856 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.126 0.874 46 H 0.090 0.910 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.130 0.870 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.111 -25.319 14.789 29.398 hybrid contribution -1.042 1.200 -0.327 1.623 sum 1.069 -24.118 14.462 28.142 Atomic orbital electron populations 1.21729 0.95952 1.01836 1.01403 1.21751 0.96400 0.94573 1.03083 1.23131 0.95959 0.94422 0.86014 0.90347 1.23034 0.93449 1.02992 0.98716 1.23126 0.96270 0.99715 0.98354 1.23152 0.89471 0.96327 0.91657 0.86634 1.20759 0.80521 0.78159 0.90502 1.90710 1.40108 1.53147 1.61588 1.45772 1.32345 1.48126 1.10040 1.21333 0.97713 0.98829 0.81056 1.23141 0.99213 0.92397 0.97385 1.23875 0.96600 0.95441 0.95191 1.68438 1.44769 1.03438 1.03735 1.22351 0.99218 0.90707 0.98664 1.20751 0.82731 0.87216 0.86568 1.90477 1.48287 1.85944 1.25596 1.41960 1.49497 1.06964 1.22811 1.19666 1.34732 0.85084 1.06861 0.90280 1.26058 0.95643 1.03444 0.96203 1.69676 1.36031 1.34083 1.16377 0.84916 0.78203 0.76865 0.78282 1.19572 1.19571 1.19728 1.24084 1.03007 0.88568 0.95807 1.89019 1.42625 1.57241 1.40967 0.91910 0.92073 0.94599 0.88282 0.92394 0.88012 0.88939 0.86324 0.90893 0.74503 0.90390 0.92900 0.85632 0.92623 0.90752 0.87366 0.90956 0.77097 0.91308 0.86954 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.83 71.98 0.71 -1.51 16 2 C -0.12 -1.52 5.42 30.60 0.17 -1.35 16 3 C 0.06 0.84 3.41 30.97 0.11 0.94 16 4 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 5 C -0.14 -1.11 6.64 31.59 0.21 -0.90 16 6 C -0.14 -1.30 6.57 31.90 0.21 -1.09 16 7 C 0.05 0.91 3.76 30.53 0.11 1.02 16 8 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 9 C 0.51 11.71 7.21 87.66 0.63 12.34 16 10 O -0.58 -19.34 16.57 15.20 0.25 -19.08 16 11 N -0.71 -12.01 5.54 -463.05 -2.57 -14.57 16 12 C 0.13 2.54 5.51 86.38 0.48 3.02 16 13 C -0.10 -1.90 3.93 -10.14 -0.04 -1.94 16 14 C 0.02 0.51 6.33 86.37 0.55 1.06 16 15 N -0.48 -14.81 5.95 -911.70 -5.42 -20.23 16 16 C 0.02 0.77 5.31 85.56 0.45 1.22 16 17 C 0.44 21.14 7.59 87.66 0.67 21.81 16 18 O -0.62 -34.09 15.13 -3.07 -0.05 -34.14 16 19 N -0.57 -29.90 5.29 -306.98 -1.62 -31.53 16 20 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 23 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 24 Si 0.99 43.18 29.55 68.60 2.03 45.20 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 C 0.01 0.28 7.54 86.41 0.65 0.94 16 29 O -0.38 -8.45 10.12 -130.75 -1.32 -9.77 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.03 0.72 7.91 -2.39 -0.02 0.70 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 0.56 7.70 -2.39 -0.02 0.54 16 37 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.07 0.85 8.05 -2.39 -0.02 0.83 16 39 H 0.42 4.51 8.47 -92.71 -0.79 3.73 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.22 7.88 -2.38 -0.02 1.21 16 42 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 1.70 7.57 -2.39 -0.02 1.68 16 44 H 0.07 2.38 8.10 -2.39 -0.02 2.36 16 45 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 46 H 0.07 2.24 7.70 -2.38 -0.02 2.22 16 47 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 48 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 49 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.08 1.53 7.75 -2.39 -0.02 1.51 16 Total: -1.00 -80.03 408.93 -2.81 -82.84 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.57 Total: 34.17 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 6.18 Total: 16.97 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -9.33 Total: -116.20 kcal Atomic # 8 Polarization: -61.87 SS G_CDS: -1.12 Total: -62.99 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -80.03 -2.81 -82.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714966511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.169 kcal (2) G-P(sol) polarization free energy of solvation -80.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds