Wall clock time and date at job start Tue Mar 31 2020 23:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47253 * 2 1 4 4 H 1.08996 * 110.67844 * 52.03496 * 3 2 1 5 5 O 1.44387 * 110.61846 * 289.06653 * 3 2 1 6 6 C 1.43744 * 106.97451 * 201.43780 * 5 3 2 7 7 C 1.54098 * 107.29654 * 26.51714 * 6 5 3 8 8 C 1.54817 * 104.18777 * 357.96691 * 7 6 5 9 9 H 1.09001 * 110.90779 * 97.35085 * 8 7 6 10 10 C 1.50700 * 110.90703 * 220.92102 * 8 7 6 11 11 O 1.21285 * 119.99511 * 118.54831 * 10 8 7 12 12 N 1.34768 * 119.99786 * 298.54721 * 10 8 7 13 13 C 1.46509 * 119.99477 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.46823 * 180.02562 * 13 12 10 15 15 C 1.30996 * 120.00278 * 125.00105 * 14 13 12 16 16 C 1.50698 * 120.00278 * 180.02562 * 15 14 13 17 17 N 1.46907 * 109.47378 * 124.99595 * 16 15 14 18 18 C 1.46895 * 110.99969 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47051 * 180.02562 * 18 17 16 20 20 O 1.21292 * 119.99931 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.37090 * 119.99722 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00228 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99996 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47317 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47081 * 120.00006 * 26 24 22 29 29 H 1.48501 * 109.47213 * 240.00378 * 26 24 22 30 30 H 1.08997 * 109.47447 * 300.00038 * 1 2 3 31 31 H 1.09001 * 109.47437 * 60.00025 * 1 2 3 32 32 H 1.09000 * 109.47424 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47071 * 239.99285 * 2 1 3 34 34 H 1.08999 * 109.46941 * 120.00134 * 2 1 3 35 35 H 1.09004 * 109.87635 * 267.08540 * 6 5 3 36 36 H 1.09008 * 109.99944 * 146.01225 * 6 5 3 37 37 H 1.09001 * 110.48747 * 239.29093 * 7 6 5 38 38 H 1.09001 * 110.60141 * 116.69700 * 7 6 5 39 39 H 0.96996 * 120.00769 * 359.97438 * 12 10 8 40 40 H 1.08996 * 109.47420 * 60.00021 * 13 12 10 41 41 H 1.08996 * 109.47228 * 299.99531 * 13 12 10 42 42 H 1.08006 * 119.99882 * 304.99857 * 14 13 12 43 43 H 1.07995 * 120.00108 * 359.97438 * 15 14 13 44 44 H 1.09003 * 109.47039 * 4.99655 * 16 15 14 45 45 H 1.09004 * 109.47178 * 244.99811 * 16 15 14 46 46 H 1.00902 * 110.99728 * 56.04766 * 17 16 15 47 47 H 1.09004 * 109.47210 * 60.00310 * 18 17 16 48 48 H 1.08997 * 109.47605 * 300.00670 * 18 17 16 49 49 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 50 50 H 0.97000 * 120.00310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5768 2.0144 0.8040 5 8 1.7933 2.0689 -1.2773 6 6 2.7074 3.1729 -1.3867 7 6 3.9334 2.8408 -0.5142 8 6 3.5845 1.4753 0.1265 9 1 4.0384 0.6564 -0.4316 10 6 4.0066 1.4362 1.5726 11 8 3.1763 1.2796 2.4426 12 7 5.3068 1.5752 1.8990 13 6 5.7172 1.5367 3.3049 14 6 7.2107 1.7150 3.3971 15 6 7.7118 2.6675 4.1438 16 6 9.2054 2.8462 4.2356 17 7 9.5566 4.2264 3.8756 18 6 11.0081 4.4380 3.9546 19 6 11.3293 5.8619 3.5799 20 8 10.4368 6.6254 3.2772 21 7 12.6084 6.2869 3.5810 22 6 12.9006 7.5821 3.2396 23 1 12.1059 8.2619 2.9701 24 6 14.2191 8.0204 3.2413 25 7 15.1861 7.1933 3.5697 26 14 14.6173 9.7854 2.7768 27 1 13.3609 10.5071 2.4513 28 1 15.2922 10.4569 3.9164 29 1 15.5151 9.7955 1.5940 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 2.2318 4.0850 -1.0261 36 1 3.0148 3.3008 -2.4247 37 1 4.0703 3.5997 0.2561 38 1 4.8297 2.7560 -1.1286 39 1 5.9709 1.7001 1.2031 40 1 5.4380 0.5765 3.7387 41 1 5.2215 2.3397 3.8502 42 1 7.8681 1.0573 2.8477 43 1 7.0546 3.3254 4.6930 44 1 9.6967 2.1556 3.5501 45 1 9.5338 2.6417 5.2547 46 1 9.0629 4.8882 4.4556 47 1 11.5123 3.7585 3.2674 48 1 11.3486 4.2447 4.9718 49 1 13.3217 5.6774 3.8269 50 1 16.1065 7.4994 3.5713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715848558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:08 Heat of formation + Delta-G solvation = -114.220463 kcal Electronic energy + Delta-G solvation = -28000.528223 eV Core-core repulsion = 23834.498561 eV Total energy + Delta-G solvation = -4166.029662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84756 -38.95611 -38.36895 -36.79427 -35.33020 -33.98627 -33.87826 -33.26544 -32.34382 -31.24534 -29.02425 -28.38593 -26.25818 -24.63953 -23.91838 -22.88706 -22.36534 -21.42489 -20.76507 -19.93985 -19.17061 -17.97879 -17.90070 -16.74493 -16.48735 -16.24550 -15.90048 -15.61124 -15.45310 -15.20918 -14.71377 -14.47211 -14.28120 -14.04809 -13.91939 -13.84643 -13.68074 -13.55042 -13.40250 -13.31065 -12.64090 -12.55931 -12.28507 -12.00467 -11.86727 -11.82330 -11.62384 -11.54519 -11.28198 -11.26985 -11.18429 -11.09005 -11.03407 -10.36975 -10.30609 -10.25888 -10.01755 -9.64355 -9.55464 -9.28246 -8.51544 -8.11008 -7.99677 -6.45226 -3.86106 1.76740 2.24823 2.94533 3.13866 3.24760 3.31971 3.42719 3.86653 4.02753 4.08263 4.15796 4.28798 4.33784 4.56106 4.62225 4.73808 4.77190 4.81192 4.83074 4.99039 5.07357 5.09907 5.18488 5.22659 5.30793 5.32632 5.34763 5.37213 5.44350 5.44761 5.53983 5.57507 5.62714 5.68418 5.74616 5.82255 5.91232 5.98452 6.02881 6.21146 6.36596 6.50952 6.52430 7.10777 7.13619 7.52191 7.56576 7.83820 8.02860 8.57424 9.14456 9.50447 10.01663 10.72523 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.001506 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.938928 B =18582.527199 C =19862.982480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.098 3.902 4 H 0.084 0.916 5 O -0.371 6.371 6 C 0.048 3.952 7 C -0.149 4.149 8 C -0.144 4.144 9 H 0.113 0.887 10 C 0.525 3.475 11 O -0.537 6.537 12 N -0.722 5.722 13 C 0.153 3.847 14 C -0.185 4.185 15 C -0.109 4.109 16 C 0.082 3.918 17 N -0.665 5.665 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.404 0.596 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.350 0.650 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.589 -16.903 -5.100 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.040 3.960 4 H 0.101 0.899 5 O -0.291 6.291 6 C -0.028 4.028 7 C -0.187 4.187 8 C -0.166 4.166 9 H 0.131 0.869 10 C 0.310 3.690 11 O -0.414 6.414 12 N -0.374 5.374 13 C 0.030 3.970 14 C -0.204 4.204 15 C -0.128 4.128 16 C -0.047 4.047 17 N -0.298 5.298 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.239 0.761 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.170 0.830 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.725 -16.640 -5.483 27.910 hybrid contribution 1.669 0.656 0.748 1.943 sum -20.056 -15.984 -4.735 26.080 Atomic orbital electron populations 1.21704 0.95019 1.01629 1.02266 1.21536 0.97049 0.93895 1.02728 1.23015 0.91050 0.95332 0.86577 0.89853 1.88899 1.58491 1.45037 1.36640 1.23120 0.88806 0.90266 1.00655 1.22969 1.00045 0.95593 1.00075 1.22970 0.99195 1.00504 0.93906 0.86872 1.20230 0.82314 0.75983 0.90441 1.90722 1.51253 1.48872 1.50570 1.46031 1.08194 1.73954 1.09213 1.20322 0.92167 1.02409 0.82124 1.22723 0.95093 1.00666 1.01964 1.22886 0.96558 0.95981 0.97395 1.21094 0.92471 0.91952 0.99222 1.60136 1.06360 1.02830 1.60430 1.21691 0.89041 0.97414 1.00117 1.19792 0.83793 0.88790 0.85089 1.90526 1.46233 1.56484 1.53509 1.41866 1.05967 1.12464 1.59679 1.19763 0.93214 0.87449 1.42523 0.87844 1.25266 0.95206 1.00060 0.97383 1.69617 1.00408 1.35736 1.48508 0.85796 0.78641 0.81845 0.78041 1.19206 1.20755 1.20716 0.92623 0.92165 0.92681 0.91267 0.90242 0.91997 0.89353 0.89877 0.89255 0.76094 0.90799 0.91040 0.86531 0.86944 0.90481 0.94255 0.83036 0.89544 0.93772 0.77453 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.86 37.16 0.37 -0.75 16 2 C -0.11 -0.91 5.69 -26.74 -0.15 -1.06 16 3 C 0.10 0.87 2.34 -25.68 -0.06 0.81 16 4 H 0.08 0.86 7.53 -51.93 -0.39 0.47 16 5 O -0.37 -3.50 11.08 -35.23 -0.39 -3.89 16 6 C 0.05 0.35 7.70 37.73 0.29 0.64 16 7 C -0.15 -0.96 6.55 -25.20 -0.16 -1.13 16 8 C -0.14 -1.07 2.95 -89.76 -0.26 -1.34 16 9 H 0.11 0.67 8.06 -51.93 -0.42 0.25 16 10 C 0.52 4.96 7.05 -10.99 -0.08 4.88 16 11 O -0.54 -6.94 15.70 5.55 0.09 -6.85 16 12 N -0.72 -5.74 5.50 -61.47 -0.34 -6.08 16 13 C 0.15 1.30 6.11 -5.19 -0.03 1.27 16 14 C -0.19 -1.53 9.24 -36.03 -0.33 -1.86 16 15 C -0.11 -1.05 9.38 -36.03 -0.34 -1.39 16 16 C 0.08 0.91 6.12 -4.97 -0.03 0.88 16 17 N -0.67 -10.22 6.12 -116.33 -0.71 -10.93 16 18 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 19 C 0.44 10.21 7.82 -10.98 -0.09 10.12 16 20 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 21 N -0.56 -14.07 5.29 -10.96 -0.06 -14.12 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 26 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.47 8.06 -51.93 -0.42 0.06 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.40 2.47 8.46 -40.82 -0.35 2.13 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 42 H 0.12 0.86 7.84 -52.48 -0.41 0.45 16 43 H 0.11 1.06 7.84 -52.49 -0.41 0.65 16 44 H 0.08 0.81 7.79 -51.93 -0.40 0.40 16 45 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.35 5.58 8.42 -39.29 -0.33 5.25 16 47 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 48 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 418.01 15.07 6.30 6.30 Total: -1.00 -33.21 418.01 -8.90 -42.11 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -8.42 Total: 12.81 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.15 Total: 3.95 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.38 Total: -54.63 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.22 Total: -26.32 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.21 -8.90 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715848558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.112 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds