Wall clock time and date at job start Tue Mar 31 2020 23:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47253 * 2 1 4 4 H 1.08996 * 110.67844 * 52.03496 * 3 2 1 5 5 O 1.44387 * 110.61846 * 289.06653 * 3 2 1 6 6 C 1.43744 * 106.97451 * 201.43780 * 5 3 2 7 7 C 1.54098 * 107.29654 * 26.51714 * 6 5 3 8 8 C 1.54817 * 104.18777 * 357.96691 * 7 6 5 9 9 H 1.09001 * 110.90779 * 97.35085 * 8 7 6 10 10 C 1.50700 * 110.90703 * 220.92102 * 8 7 6 11 11 O 1.21285 * 119.99511 * 118.54831 * 10 8 7 12 12 N 1.34768 * 119.99786 * 298.54721 * 10 8 7 13 13 C 1.46509 * 119.99477 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.46823 * 180.02562 * 13 12 10 15 15 C 1.30996 * 120.00278 * 125.00105 * 14 13 12 16 16 C 1.50698 * 120.00278 * 180.02562 * 15 14 13 17 17 N 1.46907 * 109.47378 * 124.99595 * 16 15 14 18 18 C 1.46895 * 110.99969 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47051 * 180.02562 * 18 17 16 20 20 O 1.21292 * 119.99931 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.37090 * 119.99722 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00228 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99996 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47317 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47081 * 120.00006 * 26 24 22 29 29 H 1.48501 * 109.47213 * 240.00378 * 26 24 22 30 30 H 1.08997 * 109.47447 * 300.00038 * 1 2 3 31 31 H 1.09001 * 109.47437 * 60.00025 * 1 2 3 32 32 H 1.09000 * 109.47424 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47071 * 239.99285 * 2 1 3 34 34 H 1.08999 * 109.46941 * 120.00134 * 2 1 3 35 35 H 1.09004 * 109.87635 * 267.08540 * 6 5 3 36 36 H 1.09008 * 109.99944 * 146.01225 * 6 5 3 37 37 H 1.09001 * 110.48747 * 239.29093 * 7 6 5 38 38 H 1.09001 * 110.60141 * 116.69700 * 7 6 5 39 39 H 0.96996 * 120.00769 * 359.97438 * 12 10 8 40 40 H 1.08996 * 109.47420 * 60.00021 * 13 12 10 41 41 H 1.08996 * 109.47228 * 299.99531 * 13 12 10 42 42 H 1.08006 * 119.99882 * 304.99857 * 14 13 12 43 43 H 1.07995 * 120.00108 * 359.97438 * 15 14 13 44 44 H 1.09003 * 109.47039 * 4.99655 * 16 15 14 45 45 H 1.09004 * 109.47178 * 244.99811 * 16 15 14 46 46 H 1.00902 * 110.99728 * 56.04766 * 17 16 15 47 47 H 1.09004 * 109.47210 * 60.00310 * 18 17 16 48 48 H 1.08997 * 109.47605 * 300.00670 * 18 17 16 49 49 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 50 50 H 0.97000 * 120.00310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5768 2.0144 0.8040 5 8 1.7933 2.0689 -1.2773 6 6 2.7074 3.1729 -1.3867 7 6 3.9334 2.8408 -0.5142 8 6 3.5845 1.4753 0.1265 9 1 4.0384 0.6564 -0.4316 10 6 4.0066 1.4362 1.5726 11 8 3.1763 1.2796 2.4426 12 7 5.3068 1.5752 1.8990 13 6 5.7172 1.5367 3.3049 14 6 7.2107 1.7150 3.3971 15 6 7.7118 2.6675 4.1438 16 6 9.2054 2.8462 4.2356 17 7 9.5566 4.2264 3.8756 18 6 11.0081 4.4380 3.9546 19 6 11.3293 5.8619 3.5799 20 8 10.4368 6.6254 3.2772 21 7 12.6084 6.2869 3.5810 22 6 12.9006 7.5821 3.2396 23 1 12.1059 8.2619 2.9701 24 6 14.2191 8.0204 3.2413 25 7 15.1861 7.1933 3.5697 26 14 14.6173 9.7854 2.7768 27 1 13.3609 10.5071 2.4513 28 1 15.2922 10.4569 3.9164 29 1 15.5151 9.7955 1.5940 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 2.2318 4.0850 -1.0261 36 1 3.0148 3.3008 -2.4247 37 1 4.0703 3.5997 0.2561 38 1 4.8297 2.7560 -1.1286 39 1 5.9709 1.7001 1.2031 40 1 5.4380 0.5765 3.7387 41 1 5.2215 2.3397 3.8502 42 1 7.8681 1.0573 2.8477 43 1 7.0546 3.3254 4.6930 44 1 9.6967 2.1556 3.5501 45 1 9.5338 2.6417 5.2547 46 1 9.0629 4.8882 4.4556 47 1 11.5123 3.7585 3.2674 48 1 11.3486 4.2447 4.9718 49 1 13.3217 5.6774 3.8269 50 1 16.1065 7.4994 3.5713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715848558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:07 Heat of formation + Delta-G solvation = -139.549138 kcal Electronic energy + Delta-G solvation = -28001.626557 eV Core-core repulsion = 23834.498561 eV Total energy + Delta-G solvation = -4167.127996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.54357 -40.16080 -39.65921 -37.76562 -36.37395 -35.82548 -34.53364 -34.12628 -33.29092 -33.03214 -29.84509 -29.27542 -27.59635 -26.01277 -24.83926 -23.72912 -23.11482 -22.06692 -21.52337 -21.16607 -20.45652 -19.86751 -18.64118 -17.89794 -17.37882 -17.16883 -16.95512 -16.60430 -16.44193 -16.18711 -15.97030 -15.94653 -15.37818 -15.12824 -15.07562 -14.71565 -14.61874 -14.42320 -14.23507 -14.06163 -13.98477 -13.54540 -13.35242 -13.15605 -13.01126 -12.90775 -12.72350 -12.60452 -12.45276 -12.40654 -12.11835 -12.04428 -11.88179 -11.79615 -11.63051 -11.51635 -11.07704 -10.68461 -10.39827 -10.35670 -10.04131 -10.00905 -9.27550 -8.47052 -5.95689 1.03580 1.36776 1.42532 1.51281 1.56409 2.05131 2.26063 2.29836 2.80959 3.01227 3.20467 3.44755 3.53765 3.58168 3.72363 3.77366 4.02832 4.08927 4.11197 4.19536 4.23163 4.30513 4.40166 4.43427 4.46846 4.50876 4.54787 4.57310 4.66374 4.69225 4.75897 4.80806 4.85142 4.86880 4.96648 5.02820 5.07480 5.20185 5.31466 5.38202 5.41207 5.66132 5.76391 5.88105 5.89723 6.09808 6.36907 6.47158 6.60037 7.12697 7.14492 7.56262 8.11591 8.70464 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.001506 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.938928 B =18582.527199 C =19862.982480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.095 3.905 4 H 0.060 0.940 5 O -0.386 6.386 6 C 0.041 3.959 7 C -0.144 4.144 8 C -0.137 4.137 9 H 0.136 0.864 10 C 0.524 3.476 11 O -0.577 6.577 12 N -0.712 5.712 13 C 0.153 3.847 14 C -0.162 4.162 15 C -0.126 4.126 16 C 0.086 3.914 17 N -0.681 5.681 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.416 0.584 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.134 0.866 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.344 0.656 47 H 0.107 0.893 48 H 0.068 0.932 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.595 -18.061 -5.919 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C 0.037 3.963 4 H 0.078 0.922 5 O -0.306 6.306 6 C -0.035 4.035 7 C -0.181 4.181 8 C -0.158 4.158 9 H 0.154 0.846 10 C 0.311 3.689 11 O -0.457 6.457 12 N -0.364 5.364 13 C 0.030 3.970 14 C -0.182 4.182 15 C -0.145 4.145 16 C -0.042 4.042 17 N -0.313 5.313 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.253 0.747 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.152 0.848 43 H 0.127 0.873 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.162 0.838 47 H 0.125 0.875 48 H 0.086 0.914 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.695 -17.829 -6.307 28.035 hybrid contribution 1.289 0.978 1.006 1.905 sum -19.406 -16.851 -5.301 26.242 Atomic orbital electron populations 1.21692 0.94954 1.02259 1.01592 1.21523 0.97174 0.93389 1.02921 1.22962 0.92067 0.95427 0.85831 0.92228 1.88882 1.59384 1.45708 1.36593 1.23291 0.88757 0.89592 1.01863 1.22974 1.00663 0.94586 0.99924 1.22949 0.98202 1.01906 0.92752 0.84639 1.20569 0.82269 0.75159 0.90944 1.90708 1.52348 1.50809 1.51813 1.45951 1.08070 1.73050 1.09336 1.20272 0.92355 1.02038 0.82359 1.22758 0.94830 0.99919 1.00660 1.22802 0.95898 0.97058 0.98782 1.21135 0.93325 0.89523 1.00207 1.60148 1.05125 1.04976 1.61075 1.21551 0.90561 0.92919 1.01729 1.20925 0.82592 0.91049 0.83051 1.90494 1.47243 1.58504 1.54882 1.41931 1.06915 1.11860 1.60282 1.19707 0.93315 0.88687 1.44734 0.90374 1.26016 0.94582 1.03817 0.96709 1.69671 1.00799 1.37198 1.48374 0.84881 0.78122 0.77138 0.78256 1.19863 1.19631 1.19579 0.93457 0.92646 0.91395 0.90151 0.90761 0.92327 0.87617 0.90785 0.86903 0.74736 0.90616 0.92368 0.84815 0.87312 0.89244 0.93053 0.83807 0.87482 0.91424 0.76912 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.86 71.98 0.71 -1.50 16 2 C -0.11 -1.74 5.69 30.59 0.17 -1.56 16 3 C 0.09 1.67 2.34 31.28 0.07 1.74 16 4 H 0.06 1.31 7.53 -2.39 -0.02 1.30 16 5 O -0.39 -7.05 11.08 -148.98 -1.65 -8.70 16 6 C 0.04 0.55 7.70 72.35 0.56 1.11 16 7 C -0.14 -1.63 6.55 31.59 0.21 -1.43 16 8 C -0.14 -1.86 2.95 -10.23 -0.03 -1.89 16 9 H 0.14 1.25 8.06 -2.39 -0.02 1.23 16 10 C 0.52 9.54 7.05 87.66 0.62 10.16 16 11 O -0.58 -15.14 15.70 -3.05 -0.05 -15.18 16 12 N -0.71 -10.24 5.50 -466.79 -2.57 -12.80 16 13 C 0.15 2.42 6.11 85.63 0.52 2.94 16 14 C -0.16 -2.32 9.24 25.65 0.24 -2.08 16 15 C -0.13 -2.22 9.38 25.65 0.24 -1.98 16 16 C 0.09 1.70 6.12 85.56 0.52 2.23 16 17 N -0.68 -19.90 6.12 -521.97 -3.19 -23.10 16 18 C 0.06 2.08 6.17 85.56 0.53 2.61 16 19 C 0.44 20.26 7.82 87.66 0.69 20.94 16 20 O -0.62 -34.16 15.78 -3.07 -0.05 -34.21 16 21 N -0.57 -28.81 5.29 -306.98 -1.62 -30.43 16 22 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -48.82 13.05 21.66 0.28 -48.53 16 26 Si 0.99 42.37 29.55 68.60 2.03 44.39 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.87 8.06 -2.39 -0.02 0.85 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.22 8.04 -2.39 -0.02 1.20 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.07 0.99 7.85 -2.39 -0.02 0.97 16 38 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.42 4.08 8.46 -92.71 -0.78 3.29 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.10 7.79 -2.39 -0.02 1.08 16 42 H 0.13 1.50 7.84 -2.91 -0.02 1.47 16 43 H 0.11 1.98 7.84 -2.91 -0.02 1.96 16 44 H 0.09 1.56 7.79 -2.39 -0.02 1.54 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.34 10.76 8.42 -89.69 -0.76 10.00 16 47 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 48 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 49 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 50 H 0.28 13.76 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -72.72 418.01 -1.81 -74.53 By element: Atomic # 1 Polarization: 42.21 SS G_CDS: -1.31 Total: 40.89 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.33 Total: 13.15 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -7.10 Total: -114.87 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: -1.75 Total: -58.10 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -72.72 -1.81 -74.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715848558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.024 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds