Wall clock time and date at job start Tue Mar 31 2020 23:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46725 * 2 1 4 4 H 1.08999 * 110.54448 * 52.39006 * 3 2 1 5 5 C 1.54814 * 110.49062 * 289.76771 * 3 2 1 6 6 C 1.54995 * 102.09324 * 220.44672 * 5 3 2 7 7 O 1.44376 * 103.49158 * 37.02421 * 6 5 3 8 8 C 1.43742 * 106.97615 * 319.93931 * 7 6 5 9 9 H 1.09002 * 109.87999 * 266.94118 * 8 7 6 10 10 C 1.50698 * 109.88461 * 145.93967 * 8 7 6 11 11 O 1.21290 * 119.99413 * 356.45550 * 10 8 7 12 12 N 1.34771 * 120.00356 * 176.45306 * 10 8 7 13 13 C 1.46506 * 119.99867 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.46932 * 180.02562 * 13 12 10 15 15 C 1.30993 * 120.00095 * 127.09797 * 14 13 12 16 16 C 1.50704 * 119.99899 * 7.83560 * 15 14 13 17 17 N 1.46899 * 109.46878 * 127.05103 * 16 15 14 18 18 C 1.46901 * 110.99744 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47324 * 179.97438 * 18 17 16 20 20 O 1.21297 * 119.99734 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00298 * 179.97438 * 19 18 17 22 22 C 1.37096 * 120.00008 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00037 * 0.02562 * 22 21 19 24 24 C 1.38944 * 120.00058 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00053 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 120.00078 * 0.02562 * 24 22 21 27 27 H 1.48490 * 109.47148 * 89.99657 * 26 24 22 28 28 H 1.48498 * 109.46954 * 210.00284 * 26 24 22 29 29 H 1.48503 * 109.46637 * 329.99871 * 26 24 22 30 30 H 1.09005 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46944 * 299.99561 * 1 2 3 32 32 H 1.08998 * 109.47288 * 60.00275 * 1 2 3 33 33 H 1.09000 * 109.46944 * 240.00439 * 2 1 3 34 34 H 1.08994 * 109.47423 * 120.00214 * 2 1 3 35 35 H 1.08998 * 110.90917 * 102.24444 * 5 3 2 36 36 H 1.09003 * 110.90213 * 338.64365 * 5 3 2 37 37 H 1.08994 * 110.61813 * 278.52164 * 6 5 3 38 38 H 1.09009 * 110.61671 * 155.52403 * 6 5 3 39 39 H 0.96998 * 120.00057 * 0.02562 * 12 10 8 40 40 H 1.08994 * 109.47210 * 60.00117 * 13 12 10 41 41 H 1.08999 * 109.47079 * 300.00135 * 13 12 10 42 42 H 1.08003 * 119.99996 * 307.36860 * 14 13 12 43 43 H 1.08002 * 120.00604 * 187.84114 * 15 14 13 44 44 H 1.09001 * 109.46888 * 247.04627 * 16 15 14 45 45 H 1.09000 * 109.47161 * 7.04950 * 16 15 14 46 46 H 1.00900 * 110.99941 * 56.04851 * 17 16 15 47 47 H 1.08999 * 109.47725 * 300.00339 * 18 17 16 48 48 H 1.09002 * 109.46778 * 60.00557 * 18 17 16 49 49 H 0.97000 * 119.99838 * 0.02562 * 21 19 18 50 50 H 0.97006 * 119.99780 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5801 2.0107 0.8086 5 6 1.7581 2.1169 -1.3647 6 6 3.0602 2.9231 -1.6036 7 8 4.0919 2.0594 -1.0802 8 6 3.5756 1.4717 0.1257 9 1 3.8678 2.0738 0.9860 10 6 4.1039 0.0687 0.2792 11 8 4.7989 -0.4158 -0.5888 12 7 3.8042 -0.6475 1.3808 13 6 4.3175 -2.0116 1.5297 14 6 3.8408 -2.5876 2.8381 15 6 3.2258 -3.7440 2.8594 16 6 3.1500 -4.5802 1.6079 17 7 3.6444 -5.9339 1.8929 18 6 3.5846 -6.7795 0.6932 19 6 4.0991 -8.1570 1.0233 20 8 4.4778 -8.4095 2.1477 21 7 4.1375 -9.1085 0.0697 22 6 4.6050 -10.3618 0.3702 23 1 4.9422 -10.5866 1.3713 24 6 4.6451 -11.3426 -0.6131 25 7 5.0928 -12.5441 -0.3249 26 14 4.0625 -10.9535 -2.3448 27 1 5.2043 -10.4504 -3.1498 28 1 3.5187 -12.1846 -2.9724 29 1 3.0013 -9.9162 -2.2886 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.8959 2.7806 -1.3000 36 1 1.6144 1.3698 -2.1454 37 1 3.0341 3.8652 -1.0561 38 1 3.2118 3.1007 -2.6683 39 1 3.2482 -0.2601 2.0748 40 1 5.4072 -1.9933 1.5158 41 1 3.9539 -2.6283 0.7077 42 1 4.0023 -2.0449 3.7578 43 1 2.7729 -4.0982 3.7737 44 1 2.1152 -4.6351 1.2697 45 1 3.7631 -4.1258 0.8296 46 1 3.1333 -6.3523 2.6557 47 1 2.5528 -6.8495 0.3489 48 1 4.2006 -6.3405 -0.0917 49 1 3.8343 -8.9067 -0.8293 50 1 5.1211 -13.2287 -1.0115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716306740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:41 Heat of formation + Delta-G solvation = -112.739966 kcal Electronic energy + Delta-G solvation = -29036.992651 eV Core-core repulsion = 24871.027189 eV Total energy + Delta-G solvation = -4165.965463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.76533 -40.34172 -39.55710 -38.03050 -36.46416 -35.99146 -35.47739 -33.89109 -33.68426 -31.32304 -30.64712 -29.29072 -27.30036 -26.17934 -24.71597 -24.39844 -23.60664 -22.24944 -21.35975 -21.08977 -20.44173 -19.66085 -18.16490 -17.82860 -17.70407 -17.43168 -17.05605 -16.86507 -16.60155 -16.02779 -15.87354 -15.72805 -15.55255 -15.31898 -15.28445 -14.95241 -14.48104 -14.41806 -14.34937 -14.23625 -13.96444 -13.54888 -13.45264 -13.27706 -13.06810 -13.01092 -12.75794 -12.57691 -12.42780 -12.21457 -12.09191 -11.99195 -11.74585 -11.63247 -11.53817 -11.50985 -11.14095 -10.61145 -10.47262 -10.32090 -10.26532 -9.89508 -9.27894 -8.42959 -6.03887 1.01652 1.28715 1.34534 1.42864 1.53221 1.92630 2.08401 2.21346 2.77121 3.03988 3.13096 3.38341 3.51898 3.62333 3.71180 3.76128 3.99422 4.05598 4.11356 4.20765 4.26712 4.27389 4.38924 4.41225 4.45577 4.48062 4.49244 4.53416 4.68399 4.73648 4.76172 4.82443 4.87610 4.97543 4.99377 5.12853 5.19615 5.25848 5.31471 5.42292 5.50239 5.58759 5.79818 5.80982 5.88665 6.00817 6.36987 6.51530 6.57680 6.85806 7.20210 7.37357 7.93379 8.74529 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.001864 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.144038 B =15016.346739 C =15675.077364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C -0.104 4.104 4 H 0.130 0.870 5 C -0.146 4.146 6 C 0.037 3.963 7 O -0.389 6.389 8 C 0.059 3.941 9 H 0.123 0.877 10 C 0.512 3.488 11 O -0.578 6.578 12 N -0.704 5.704 13 C 0.139 3.861 14 C -0.162 4.162 15 C -0.124 4.124 16 C 0.072 3.928 17 N -0.682 5.682 18 C 0.061 3.939 19 C 0.448 3.552 20 O -0.613 6.613 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.056 0.944 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.964 3.036 27 H -0.259 1.259 28 H -0.273 1.273 29 H -0.231 1.231 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.419 0.581 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.145 0.855 43 H 0.129 0.871 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.348 0.652 47 H 0.079 0.921 48 H 0.108 0.892 49 H 0.390 0.610 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 37.792 0.078 40.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.123 4.123 4 H 0.148 0.852 5 C -0.184 4.184 6 C -0.039 4.039 7 O -0.308 6.308 8 C -0.002 4.002 9 H 0.140 0.860 10 C 0.299 3.701 11 O -0.457 6.457 12 N -0.360 5.360 13 C 0.017 3.983 14 C -0.181 4.181 15 C -0.144 4.144 16 C -0.056 4.056 17 N -0.315 5.315 18 C -0.072 4.072 19 C 0.236 3.764 20 O -0.497 6.497 21 N -0.232 5.232 22 C -0.458 4.458 23 H 0.074 0.926 24 C -0.214 4.214 25 N -0.573 5.573 26 Si 0.784 3.216 27 H -0.184 1.184 28 H -0.198 1.198 29 H -0.155 1.155 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.259 0.741 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.162 0.838 43 H 0.147 0.853 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.167 0.833 47 H 0.097 0.903 48 H 0.126 0.874 49 H 0.225 0.775 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.195 37.198 -0.036 39.469 hybrid contribution -0.920 -0.884 -0.672 1.442 sum -14.115 36.314 -0.708 38.967 Atomic orbital electron populations 1.21728 0.93930 1.01906 1.02743 1.22038 0.97718 0.95175 1.02444 1.22650 0.91063 0.98130 1.00462 0.85190 1.23253 0.99078 0.99801 0.96254 1.23881 0.85756 0.93647 1.00637 1.88987 1.39806 1.62065 1.39936 1.22975 0.95340 0.90786 0.91060 0.85971 1.20999 0.79326 0.88314 0.81470 1.90729 1.39540 1.72614 1.42793 1.45961 1.53295 1.15032 1.21717 1.20402 0.98681 0.82466 0.96796 1.22733 0.99395 0.98370 0.97576 1.22831 0.97656 0.95160 0.98722 1.21313 0.99086 0.87930 0.97247 1.60080 1.61891 1.02405 1.07124 1.21638 1.01503 0.89363 0.94677 1.20945 0.82865 0.87503 0.85071 1.90541 1.52994 1.82640 1.23568 1.42039 1.59048 1.10322 1.11833 1.19012 1.41018 0.87463 0.98355 0.92566 1.26114 0.96882 0.94314 1.04066 1.69805 1.46676 1.04206 1.36633 0.85373 0.79954 0.79564 0.76690 1.18390 1.19795 1.15477 0.93210 0.90756 0.92564 0.94745 0.89505 0.87005 0.91856 0.89411 0.88596 0.74144 0.92385 0.91284 0.83775 0.85305 0.92871 0.90004 0.83347 0.90309 0.87358 0.77496 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.79 71.98 0.70 -0.36 16 2 C -0.14 -1.39 4.15 30.59 0.13 -1.27 16 3 C -0.10 -0.77 3.04 -9.80 -0.03 -0.80 16 4 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 5 C -0.15 -1.15 6.03 31.90 0.19 -0.96 16 6 C 0.04 0.39 7.72 72.66 0.56 0.95 16 7 O -0.39 -7.84 10.74 -130.27 -1.40 -9.24 16 8 C 0.06 0.81 3.84 30.22 0.12 0.92 16 9 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 10 C 0.51 10.36 5.66 87.66 0.50 10.86 16 11 O -0.58 -18.70 16.53 15.64 0.26 -18.44 16 12 N -0.70 -9.43 3.75 -466.78 -1.75 -11.18 16 13 C 0.14 2.44 5.76 85.63 0.49 2.93 16 14 C -0.16 -2.19 9.63 25.65 0.25 -1.94 16 15 C -0.12 -2.03 9.77 25.66 0.25 -1.78 16 16 C 0.07 1.49 5.77 85.56 0.49 1.98 16 17 N -0.68 -20.12 6.11 -521.97 -3.19 -23.31 16 18 C 0.06 1.91 6.17 85.56 0.53 2.43 16 19 C 0.45 20.70 7.82 87.66 0.69 21.39 16 20 O -0.61 -34.53 15.78 -3.08 -0.05 -34.58 16 21 N -0.59 -28.51 5.09 -306.99 -1.56 -30.08 16 22 C -0.33 -19.63 10.16 84.04 0.85 -18.78 16 23 H 0.06 3.98 7.39 -2.91 -0.02 3.95 16 24 C -0.02 -0.85 5.50 84.92 0.47 -0.38 16 25 N -0.93 -56.89 13.96 21.66 0.30 -56.59 16 26 Si 0.96 39.62 27.74 68.60 1.90 41.52 16 27 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 29 H -0.23 -8.01 6.52 99.48 0.65 -7.37 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.40 7.62 -2.39 -0.02 0.38 16 33 H 0.03 0.59 7.70 -2.39 -0.02 0.57 16 34 H 0.09 0.79 4.87 -2.39 -0.01 0.78 16 35 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.06 0.74 7.77 -2.39 -0.02 0.72 16 37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.42 2.41 7.56 -92.71 -0.70 1.71 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.43 5.31 -2.39 -0.01 1.41 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 1.77 5.31 -2.39 -0.01 1.76 16 46 H 0.35 10.57 8.42 -89.69 -0.76 9.82 16 47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.11 3.03 8.14 -2.39 -0.02 3.02 16 49 H 0.39 15.64 5.76 -92.71 -0.53 15.11 16 50 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -89.01 402.92 -0.38 -89.39 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: -1.07 Total: 37.33 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 6.19 Total: 15.19 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.20 Total: -121.16 kcal Atomic # 8 Polarization: -61.08 SS G_CDS: -1.19 Total: -62.27 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.90 Total: 41.52 kcal Total: -89.01 -0.38 -89.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716306740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.353 kcal (2) G-P(sol) polarization free energy of solvation -89.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds