Wall clock time and date at job start Tue Mar 31 2020 23:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47188 * 2 1 4 4 H 1.08994 * 115.55222 * 29.41471 * 3 2 1 5 5 C 1.53002 * 117.51290 * 243.71870 * 3 2 1 6 6 C 1.53001 * 117.49521 * 175.09141 * 3 2 1 7 7 H 1.08998 * 117.50378 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.49575 * 215.02165 * 6 3 2 9 9 O 1.21287 * 119.99740 * 0.02562 * 8 6 3 10 10 N 1.34772 * 120.00181 * 180.02562 * 8 6 3 11 11 C 1.46507 * 120.00250 * 180.02562 * 10 8 6 12 12 C 1.52992 * 109.47118 * 174.95039 * 11 10 8 13 13 H 1.09003 * 109.50436 * 174.08143 * 12 11 10 14 14 C 1.53098 * 109.50747 * 294.21070 * 12 11 10 15 15 O 1.43021 * 109.25881 * 176.78450 * 14 12 11 16 16 C 1.43009 * 113.73795 * 301.33155 * 15 14 12 17 17 C 1.53096 * 109.25977 * 58.66879 * 16 15 14 18 18 N 1.47008 * 109.25853 * 303.15160 * 17 16 15 19 19 C 1.46901 * 111.00074 * 182.39345 * 18 17 16 20 20 C 1.50703 * 109.47305 * 72.42940 * 19 18 17 21 21 O 1.21294 * 119.99860 * 0.02562 * 20 19 18 22 22 N 1.34777 * 120.00078 * 180.02562 * 20 19 18 23 23 C 1.37092 * 120.00073 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99835 * 359.97438 * 23 22 20 25 25 C 1.38943 * 120.00211 * 180.02562 * 23 22 20 26 26 N 1.31417 * 119.99991 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00307 * 179.97438 * 25 23 22 28 28 H 1.48513 * 109.46801 * 89.99859 * 27 25 23 29 29 H 1.48501 * 109.47300 * 209.99620 * 27 25 23 30 30 H 1.48501 * 109.47228 * 330.00180 * 27 25 23 31 31 H 1.08997 * 109.46554 * 299.99925 * 1 2 3 32 32 H 1.08991 * 109.47240 * 59.99805 * 1 2 3 33 33 H 1.08996 * 109.47034 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46981 * 239.99761 * 2 1 3 35 35 H 1.08997 * 109.46815 * 120.00319 * 2 1 3 36 36 H 1.08999 * 117.50574 * 0.02562 * 5 3 2 37 37 H 1.09004 * 117.49696 * 145.02977 * 5 3 2 38 38 H 0.96998 * 119.99977 * 359.97438 * 10 8 6 39 39 H 1.09005 * 109.46543 * 294.94970 * 11 10 8 40 40 H 1.08994 * 109.46880 * 54.94632 * 11 10 8 41 41 H 1.09003 * 109.50643 * 296.71999 * 14 12 11 42 42 H 1.09002 * 109.50706 * 56.85145 * 14 12 11 43 43 H 1.09009 * 109.50676 * 298.73506 * 16 15 14 44 44 H 1.09002 * 109.54426 * 178.63088 * 16 15 14 45 45 H 1.09000 * 109.50646 * 183.21654 * 17 16 15 46 46 H 1.08995 * 109.54284 * 63.10908 * 17 16 15 47 47 H 1.09001 * 109.47459 * 192.43168 * 19 18 17 48 48 H 1.09001 * 109.46883 * 312.42921 * 19 18 17 49 49 H 0.97000 * 120.00078 * 0.02562 * 22 20 19 50 50 H 0.97004 * 120.00046 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3892 2.1712 0.4829 5 6 2.8422 1.9085 -1.2167 6 6 3.5504 1.6577 0.1161 7 1 4.1807 0.7717 0.1921 8 6 4.0243 2.8608 0.8900 9 8 3.2180 3.6146 1.3927 10 7 5.3440 3.0992 1.0236 11 6 5.8047 4.2686 1.7764 12 6 7.3306 4.2377 1.8830 13 1 7.6815 5.1580 2.3501 14 6 7.7597 3.0373 2.7308 15 8 9.1880 2.9702 2.7648 16 6 9.7896 2.8504 1.4730 17 6 9.3810 4.0489 0.6125 18 7 7.9143 4.1157 0.5393 19 6 7.4802 5.2210 -0.3256 20 6 7.7569 4.8710 -1.7651 21 8 8.2654 3.8055 -2.0432 22 7 7.4395 5.7420 -2.7434 23 6 7.6908 5.4235 -4.0529 24 1 8.1435 4.4746 -4.3005 25 6 7.3641 6.3216 -5.0614 26 7 6.8137 7.4763 -4.7601 27 14 7.7071 5.8878 -6.8457 28 1 6.5272 5.1942 -7.4221 29 1 7.9755 7.1298 -7.6143 30 1 8.8912 4.9946 -6.9192 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0063 1.1877 -2.0177 37 1 2.7190 2.9440 -1.5341 38 1 5.9889 2.4962 0.6219 39 1 5.4948 5.1777 1.2610 40 1 5.3702 4.2515 2.7759 41 1 7.3765 3.1522 3.7447 42 1 7.3627 2.1217 2.2925 43 1 9.4515 1.9292 0.9981 44 1 10.8745 2.8295 1.5765 45 1 9.7906 3.9330 -0.3910 46 1 9.7654 4.9660 1.0587 47 1 6.4116 5.3891 -0.1916 48 1 8.0265 6.1261 -0.0602 49 1 7.0332 6.5943 -2.5209 50 1 6.5852 8.1031 -5.4642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717141526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:55 Heat of formation + Delta-G solvation = -112.784432 kcal Electronic energy + Delta-G solvation = -30681.172850 eV Core-core repulsion = 26515.205459 eV Total energy + Delta-G solvation = -4165.967391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.49317 -40.69406 -39.70126 -38.14512 -37.03018 -36.00616 -35.29660 -33.26765 -33.01376 -32.32073 -30.41680 -28.14335 -27.18110 -25.36792 -25.28213 -24.56764 -23.44358 -21.63866 -21.25116 -21.03048 -20.71782 -19.87509 -18.40143 -18.08093 -17.50445 -17.31232 -16.90939 -16.56099 -16.29921 -16.13430 -15.94548 -15.79625 -15.57985 -15.28721 -15.20714 -15.10512 -14.77021 -14.64803 -14.01728 -13.92955 -13.51259 -13.47465 -13.38132 -13.10120 -13.02179 -12.99900 -12.82516 -12.41715 -12.41144 -12.18493 -12.14375 -12.13188 -11.92801 -11.55196 -11.43914 -11.25212 -11.06398 -10.83681 -10.76347 -10.26386 -10.03135 -9.99576 -9.38218 -8.46206 -5.94755 1.37324 1.41130 1.48322 1.53501 2.05237 2.10133 2.27408 2.57230 2.86872 2.87546 3.20271 3.31736 3.61522 3.68484 3.71897 3.79946 3.85867 3.94216 4.12619 4.17403 4.21788 4.25278 4.27325 4.32765 4.43530 4.47044 4.48688 4.56701 4.59196 4.69923 4.74635 4.77994 4.80939 4.91074 4.93083 4.97175 4.99551 5.15350 5.21461 5.30241 5.40427 5.41991 5.50519 5.73672 5.93310 6.04011 6.14559 6.55181 6.59668 7.13136 7.22525 7.56571 8.11212 8.71301 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006828 B = 0.003980 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4099.978070 B = 7033.379152 C =10149.987177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.110 4.110 4 H 0.097 0.903 5 C -0.152 4.152 6 C -0.194 4.194 7 H 0.145 0.855 8 C 0.538 3.462 9 O -0.587 6.587 10 N -0.705 5.705 11 C 0.128 3.872 12 C 0.040 3.960 13 H 0.076 0.924 14 C 0.073 3.927 15 O -0.392 6.392 16 C 0.072 3.928 17 C 0.024 3.976 18 N -0.516 5.516 19 C 0.053 3.947 20 C 0.448 3.552 21 O -0.606 6.606 22 N -0.577 5.577 23 C -0.327 4.327 24 H 0.082 0.918 25 C -0.015 4.015 26 N -0.923 5.923 27 Si 0.991 3.009 28 H -0.272 1.272 29 H -0.274 1.274 30 H -0.270 1.270 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.116 0.884 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.100 0.900 48 H 0.065 0.935 49 H 0.392 0.608 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 -11.052 14.112 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.128 4.128 4 H 0.116 0.884 5 C -0.190 4.190 6 C -0.214 4.214 7 H 0.162 0.838 8 C 0.326 3.674 9 O -0.468 6.468 10 N -0.356 5.356 11 C 0.004 3.996 12 C -0.069 4.069 13 H 0.094 0.906 14 C -0.004 4.004 15 O -0.311 6.311 16 C -0.005 4.005 17 C -0.104 4.104 18 N -0.242 5.242 19 C -0.078 4.078 20 C 0.235 3.765 21 O -0.492 6.492 22 N -0.214 5.214 23 C -0.457 4.457 24 H 0.100 0.900 25 C -0.214 4.214 26 N -0.565 5.565 27 Si 0.815 3.185 28 H -0.197 1.197 29 H -0.198 1.198 30 H -0.195 1.195 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.251 0.749 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.140 0.860 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.134 0.866 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.118 0.882 48 H 0.083 0.917 49 H 0.226 0.774 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.576 -11.494 14.147 18.793 hybrid contribution 0.450 1.451 -1.190 1.930 sum -4.126 -10.043 12.957 16.905 Atomic orbital electron populations 1.21742 0.94762 1.02358 1.01810 1.21170 0.96591 0.91983 1.03023 1.22471 0.90532 0.99619 1.00215 0.88443 1.23121 1.02196 1.02706 0.90948 1.22364 0.98370 0.98738 1.01963 0.83778 1.20076 0.82205 0.85862 0.79277 1.90650 1.55039 1.50368 1.50722 1.45817 1.06714 1.28429 1.54639 1.21382 0.92255 0.88649 0.97347 1.22681 0.93659 1.00942 0.89571 0.90640 1.22785 0.80802 0.96004 1.00798 1.87964 1.20035 1.94369 1.28696 1.22667 0.99069 0.96335 0.82400 1.22790 0.87221 0.98968 1.01419 1.61714 1.09122 1.43672 1.09682 1.21784 1.02388 0.93209 0.90411 1.20542 0.83155 0.85155 0.87632 1.90470 1.48743 1.25575 1.84364 1.41950 1.55536 1.18159 1.05797 1.19642 1.39616 1.03598 0.82819 0.89998 1.26027 0.96371 0.94912 1.04086 1.69686 1.42580 1.08647 1.35562 0.84954 0.78751 0.77831 0.76986 1.19742 1.19845 1.19488 0.92957 0.92861 0.91230 0.90586 0.90610 0.86116 0.90455 0.74891 0.92386 0.89054 0.85998 0.92044 0.92395 0.86649 0.90722 0.93956 0.88164 0.91668 0.77448 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.87 71.98 0.71 -1.44 16 2 C -0.09 -1.42 6.22 30.60 0.19 -1.23 16 3 C -0.11 -2.37 5.25 -10.79 -0.06 -2.43 16 4 H 0.10 2.50 7.60 -2.39 -0.02 2.48 16 5 C -0.15 -3.63 9.88 30.60 0.30 -3.33 16 6 C -0.19 -4.49 5.91 -11.54 -0.07 -4.55 16 7 H 0.14 2.63 8.14 -2.39 -0.02 2.62 16 8 C 0.54 15.29 7.61 87.66 0.67 15.96 16 9 O -0.59 -20.61 16.25 -3.05 -0.05 -20.65 16 10 N -0.70 -17.70 5.05 -463.06 -2.34 -20.04 16 11 C 0.13 2.95 4.72 86.38 0.41 3.36 16 12 C 0.04 0.88 2.25 44.92 0.10 0.98 16 13 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 14 C 0.07 1.41 6.21 72.01 0.45 1.85 16 15 O -0.39 -8.93 10.83 -148.98 -1.61 -10.55 16 16 C 0.07 1.67 7.01 72.01 0.50 2.18 16 17 C 0.02 0.68 5.31 86.31 0.46 1.13 16 18 N -0.52 -14.76 3.49 -874.57 -3.05 -17.81 16 19 C 0.05 1.78 5.30 85.56 0.45 2.23 16 20 C 0.45 20.39 7.51 87.66 0.66 21.05 16 21 O -0.61 -31.12 14.44 -3.07 -0.04 -31.16 16 22 N -0.58 -29.15 5.29 -306.98 -1.62 -30.77 16 23 C -0.33 -18.22 9.68 84.04 0.81 -17.41 16 24 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 25 C -0.01 -0.77 5.50 84.92 0.47 -0.31 16 26 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 27 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 30 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.06 7.88 -2.39 -0.02 1.04 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 2.45 8.03 -2.39 -0.02 2.43 16 37 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.41 10.31 7.43 -92.71 -0.69 9.62 16 39 H 0.06 1.52 6.38 -2.38 -0.02 1.50 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.18 7.28 -2.39 -0.02 1.16 16 43 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.07 2.63 6.44 -2.39 -0.02 2.61 16 46 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.10 3.23 5.65 -2.39 -0.01 3.22 16 48 H 0.07 2.01 8.05 -2.39 -0.02 2.00 16 49 H 0.39 19.30 7.90 -92.71 -0.73 18.57 16 50 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -68.59 403.29 -0.81 -69.39 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -0.46 Total: 48.70 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 6.06 Total: 18.05 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -6.73 Total: -118.40 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -1.71 Total: -62.37 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -68.59 -0.81 -69.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717141526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.390 kcal (2) G-P(sol) polarization free energy of solvation -68.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds