Wall clock time and date at job start Tue Mar 31 2020 23:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47555 * 2 1 4 4 H 1.09010 * 115.55684 * 29.30917 * 3 2 1 5 5 C 1.53001 * 117.50255 * 243.62292 * 3 2 1 6 6 C 1.52994 * 117.50478 * 174.99875 * 3 2 1 7 7 H 1.09006 * 117.51323 * 0.02562 * 6 3 2 8 8 C 1.50694 * 117.50235 * 214.98377 * 6 3 2 9 9 O 1.21282 * 119.99897 * 359.97438 * 8 6 3 10 10 N 1.34779 * 120.00302 * 179.97438 * 8 6 3 11 11 C 1.46497 * 120.00279 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47324 * 175.13114 * 11 10 8 13 13 H 1.09000 * 109.54592 * 184.87623 * 12 11 10 14 14 C 1.53103 * 109.50652 * 64.76798 * 12 11 10 15 15 O 1.43015 * 109.25753 * 183.21961 * 14 12 11 16 16 C 1.43008 * 113.73935 * 58.66984 * 15 14 12 17 17 C 1.53093 * 109.26100 * 301.33145 * 16 15 14 18 18 N 1.47007 * 109.26119 * 56.84621 * 17 16 15 19 19 C 1.46893 * 111.00577 * 177.60903 * 18 17 16 20 20 C 1.50702 * 109.47004 * 293.23787 * 19 18 17 21 21 O 1.21293 * 120.00128 * 354.91531 * 20 19 18 22 22 N 1.34779 * 119.99974 * 174.91967 * 20 19 18 23 23 C 1.37097 * 120.00306 * 179.97438 * 22 20 19 24 24 H 1.08008 * 119.99427 * 359.97438 * 23 22 20 25 25 C 1.38947 * 120.00444 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99895 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00087 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46954 * 180.02562 * 27 25 23 29 29 H 1.48498 * 109.47027 * 300.00050 * 27 25 23 30 30 H 1.48498 * 109.47046 * 59.99883 * 27 25 23 31 31 H 1.09000 * 109.47309 * 60.00087 * 1 2 3 32 32 H 1.08999 * 109.47493 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47142 * 300.00050 * 1 2 3 34 34 H 1.08999 * 109.46988 * 239.99521 * 2 1 3 35 35 H 1.09005 * 109.46828 * 120.00452 * 2 1 3 36 36 H 1.08997 * 117.50104 * 145.01285 * 5 3 2 37 37 H 1.09003 * 117.49436 * 0.02562 * 5 3 2 38 38 H 0.97001 * 119.99699 * 359.97438 * 10 8 6 39 39 H 1.08996 * 109.47313 * 55.12765 * 11 10 8 40 40 H 1.09009 * 109.46910 * 295.12759 * 11 10 8 41 41 H 1.09002 * 109.50237 * 63.28368 * 14 12 11 42 42 H 1.09000 * 109.50514 * 303.15747 * 14 12 11 43 43 H 1.09008 * 109.50465 * 181.39462 * 16 15 14 44 44 H 1.09005 * 109.50576 * 61.26855 * 16 15 14 45 45 H 1.09003 * 109.50331 * 296.91121 * 17 16 15 46 46 H 1.09000 * 109.50638 * 176.78602 * 17 16 15 47 47 H 1.08995 * 109.47693 * 173.23508 * 19 18 17 48 48 H 1.09005 * 109.46896 * 53.23347 * 19 18 17 49 49 H 0.96998 * 120.00099 * 359.97438 * 22 20 19 50 50 H 0.97003 * 119.99469 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8441 1.9075 -1.2158 6 6 3.5502 1.6578 0.1183 7 1 4.1806 0.7720 0.1957 8 6 4.0229 2.8618 0.8915 9 8 3.2158 3.6167 1.3912 10 7 5.3425 3.0998 1.0277 11 6 5.8020 4.2706 1.7788 12 6 7.3280 4.2415 1.8853 13 1 7.6653 5.0637 2.5165 14 6 7.9407 4.3840 0.4895 15 8 9.3639 4.2809 0.5863 16 6 9.8145 3.0485 1.1548 17 6 9.2208 2.8923 2.5572 18 7 7.7548 2.9637 2.4740 19 6 7.1419 2.7613 3.7935 20 6 7.3913 1.3474 4.2516 21 8 7.9368 0.5571 3.5107 22 7 7.0081 0.9611 5.4847 23 6 7.2345 -0.3252 5.9014 24 1 7.7196 -1.0292 5.2412 25 6 6.8400 -0.7234 7.1727 26 7 6.2493 0.1330 7.9757 27 14 7.1491 -2.4760 7.7406 28 1 6.6376 -2.6454 9.1244 29 1 6.4475 -3.4208 6.8349 30 1 8.6074 -2.7551 7.7136 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.7214 2.9426 -1.5344 37 1 3.0092 1.1859 -2.0159 38 1 5.9879 2.4958 0.6283 39 1 5.3676 4.2544 2.7783 40 1 5.4911 5.1787 1.2621 41 1 7.6736 5.3550 0.0723 42 1 7.5615 3.5926 -0.1570 43 1 10.9027 3.0535 1.2186 44 1 9.4899 2.2182 0.5276 45 1 9.5883 3.6930 3.1992 46 1 9.5153 1.9283 2.9719 47 1 6.0684 2.9375 3.7265 48 1 7.5805 3.4576 4.5084 49 1 6.5722 1.5932 6.0774 50 1 6.0892 1.0431 7.6809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717141527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:58 Heat of formation + Delta-G solvation = -113.456172 kcal Electronic energy + Delta-G solvation = -30695.011770 eV Core-core repulsion = 26529.015250 eV Total energy + Delta-G solvation = -4165.996520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.56351 -40.76896 -39.86741 -38.16613 -37.11489 -36.36905 -35.39345 -33.17630 -33.05048 -32.35601 -30.44671 -28.14325 -27.03523 -25.40611 -25.32323 -24.57858 -23.48986 -21.72955 -21.61329 -21.08006 -20.79717 -19.96336 -18.53877 -18.26489 -17.69261 -17.38730 -16.96710 -16.58775 -16.46189 -16.23798 -15.81373 -15.75808 -15.56548 -15.44771 -15.36243 -15.20759 -14.85229 -14.69483 -14.10814 -14.03100 -13.52554 -13.41306 -13.36060 -13.15378 -13.08537 -12.99314 -12.79884 -12.48278 -12.21536 -12.21171 -11.95294 -11.93966 -11.90013 -11.60263 -11.46173 -11.29327 -11.07169 -10.85756 -10.77939 -10.33721 -10.12162 -10.07649 -9.46402 -8.93931 -6.08045 1.45776 1.50717 1.52911 1.80717 1.97492 2.09171 2.33681 2.53259 2.82806 2.83208 3.11211 3.15520 3.57769 3.62346 3.68282 3.75522 3.83498 3.86405 4.06815 4.12104 4.14387 4.19556 4.24218 4.26138 4.26184 4.40960 4.45599 4.52132 4.55643 4.63226 4.70599 4.74874 4.76699 4.85927 4.89825 4.94694 4.97888 5.13260 5.20114 5.25566 5.37378 5.46713 5.54231 5.72766 5.88519 5.93362 6.10044 6.51072 6.54738 6.72617 7.19709 7.42165 7.89393 8.53145 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006663 B = 0.004059 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4201.266927 B = 6896.462917 C =10125.306466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.125 4.125 4 H 0.096 0.904 5 C -0.122 4.122 6 C -0.206 4.206 7 H 0.129 0.871 8 C 0.538 3.462 9 O -0.588 6.588 10 N -0.704 5.704 11 C 0.128 3.872 12 C 0.039 3.961 13 H 0.075 0.925 14 C 0.073 3.927 15 O -0.391 6.391 16 C 0.074 3.926 17 C 0.020 3.980 18 N -0.514 5.514 19 C 0.055 3.945 20 C 0.450 3.550 21 O -0.600 6.600 22 N -0.589 5.589 23 C -0.406 4.406 24 H 0.077 0.923 25 C -0.043 4.043 26 N -0.918 5.918 27 Si 1.133 2.867 28 H -0.275 1.275 29 H -0.272 1.272 30 H -0.271 1.271 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.413 0.587 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.126 0.874 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.059 0.941 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.380 0.620 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 7.433 -18.688 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.144 4.144 4 H 0.114 0.886 5 C -0.159 4.159 6 C -0.227 4.227 7 H 0.147 0.853 8 C 0.326 3.674 9 O -0.469 6.469 10 N -0.355 5.355 11 C 0.004 3.996 12 C -0.070 4.070 13 H 0.092 0.908 14 C -0.004 4.004 15 O -0.310 6.310 16 C -0.003 4.003 17 C -0.107 4.107 18 N -0.240 5.240 19 C -0.076 4.076 20 C 0.237 3.763 21 O -0.485 6.485 22 N -0.228 5.228 23 C -0.535 4.535 24 H 0.095 0.905 25 C -0.241 4.241 26 N -0.558 5.558 27 Si 0.952 3.048 28 H -0.200 1.200 29 H -0.198 1.198 30 H -0.196 1.196 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.148 0.852 38 H 0.250 0.750 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.143 0.857 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.118 0.882 48 H 0.082 0.918 49 H 0.214 0.786 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.056 6.172 -17.921 19.199 hybrid contribution 0.392 1.604 0.227 1.667 sum -2.663 7.776 -17.694 19.510 Atomic orbital electron populations 1.21727 0.94531 1.02251 1.01969 1.21170 0.96849 0.92690 1.02482 1.22455 0.90654 0.99157 1.02095 0.88610 1.23185 0.99330 1.03635 0.89729 1.22324 0.98385 0.98369 1.03608 0.85331 1.20073 0.82217 0.85643 0.79426 1.90655 1.55036 1.50430 1.50778 1.45778 1.06681 1.28401 1.54643 1.21374 0.92041 0.89302 0.96855 1.22718 0.94504 0.91045 0.98720 0.90751 1.22812 0.80186 1.04030 0.93391 1.87968 1.21986 1.38373 1.82650 1.22650 1.00002 0.86421 0.91246 1.22827 0.86971 1.01813 0.99129 1.61766 1.08155 1.32498 1.21535 1.21763 1.01443 0.93196 0.91211 1.20517 0.83105 0.90742 0.81898 1.90471 1.47328 1.55854 1.54864 1.42027 1.54612 1.12046 1.14152 1.20508 1.41621 0.89030 1.02375 0.90515 1.27823 0.94135 1.10222 0.91919 1.70980 1.40936 1.05764 1.38111 0.82644 0.77405 0.68456 0.76246 1.19959 1.19786 1.19584 0.91654 0.91649 0.93602 0.89875 0.92706 0.88322 0.85235 0.74979 0.92456 0.88923 0.85669 0.91840 0.86705 0.92253 0.94254 0.90722 0.88228 0.91850 0.78608 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.87 71.98 0.71 -1.70 16 2 C -0.09 -1.74 6.21 30.59 0.19 -1.55 16 3 C -0.12 -2.68 5.25 -10.80 -0.06 -2.73 16 4 H 0.10 2.47 7.60 -2.38 -0.02 2.45 16 5 C -0.12 -2.03 9.88 30.59 0.30 -1.72 16 6 C -0.21 -4.67 5.91 -11.55 -0.07 -4.74 16 7 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 8 C 0.54 15.06 7.61 87.65 0.67 15.73 16 9 O -0.59 -20.60 16.25 -3.04 -0.05 -20.65 16 10 N -0.70 -16.97 5.12 -463.06 -2.37 -19.34 16 11 C 0.13 2.87 4.72 86.38 0.41 3.28 16 12 C 0.04 0.84 2.25 44.93 0.10 0.94 16 13 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 14 C 0.07 1.34 6.20 72.02 0.45 1.78 16 15 O -0.39 -8.79 10.83 -148.98 -1.61 -10.40 16 16 C 0.07 1.72 7.01 72.01 0.50 2.23 16 17 C 0.02 0.60 5.30 86.31 0.46 1.05 16 18 N -0.51 -14.82 3.75 -874.56 -3.28 -18.10 16 19 C 0.06 1.87 5.23 85.56 0.45 2.32 16 20 C 0.45 20.80 7.38 87.66 0.65 21.44 16 21 O -0.60 -31.38 14.22 -3.07 -0.04 -31.42 16 22 N -0.59 -29.93 5.28 -306.97 -1.62 -31.55 16 23 C -0.41 -23.02 9.68 84.04 0.81 -22.20 16 24 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 25 C -0.04 -2.34 5.50 84.93 0.47 -1.87 16 26 N -0.92 -51.91 13.68 21.66 0.30 -51.61 16 27 Si 1.13 48.44 29.92 68.60 2.05 50.49 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 30 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.08 1.22 7.88 -2.39 -0.02 1.20 16 35 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.13 1.49 8.03 -2.39 -0.02 1.47 16 38 H 0.41 9.48 7.24 -92.71 -0.67 8.81 16 39 H 0.06 1.51 6.43 -2.39 -0.02 1.49 16 40 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.13 1.66 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.13 7.00 -2.39 -0.02 1.12 16 43 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 2.74 6.10 -2.39 -0.01 2.73 16 47 H 0.10 3.30 5.85 -2.39 -0.01 3.28 16 48 H 0.06 1.97 8.12 -2.38 -0.02 1.95 16 49 H 0.38 18.23 6.73 -92.71 -0.62 17.60 16 50 H 0.26 14.17 6.77 -92.71 -0.63 13.55 16 Total: -1.00 -72.86 400.98 -0.78 -73.64 By element: Atomic # 1 Polarization: 46.88 SS G_CDS: -0.19 Total: 46.69 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.04 Total: 12.25 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -6.97 Total: -120.60 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -1.71 Total: -62.47 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.05 Total: 50.49 kcal Total: -72.86 -0.78 -73.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717141527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.820 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds