Wall clock time and date at job start Wed Apr 1 2020 00:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47089 * 2 1 4 4 N 1.46494 * 109.47030 * 179.97438 * 3 2 1 5 5 C 1.46768 * 124.35072 * 89.99750 * 4 3 2 6 6 C 1.54480 * 105.55098 * 163.02465 * 5 4 3 7 7 H 1.08997 * 110.96887 * 267.25550 * 6 5 4 8 8 C 1.50694 * 110.97029 * 143.52835 * 6 5 4 9 9 O 1.21277 * 120.00262 * 0.02562 * 8 6 5 10 10 N 1.34786 * 120.00006 * 179.97438 * 8 6 5 11 11 C 1.47144 * 120.98065 * 0.02562 * 10 8 6 12 12 C 1.53294 * 108.38597 * 129.44157 * 11 10 8 13 13 O 1.42968 * 109.22027 * 52.30028 * 12 11 10 14 14 C 1.42958 * 114.16554 * 297.42202 * 13 12 11 15 15 H 1.09003 * 109.51417 * 302.60000 * 14 13 12 16 16 C 1.53000 * 109.51344 * 182.50722 * 14 13 12 17 17 N 1.46500 * 109.47259 * 64.99269 * 16 14 13 18 18 C 1.36944 * 120.00128 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99974 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99692 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00586 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99578 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47493 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47343 * 120.00349 * 22 20 18 25 25 H 1.48499 * 109.47336 * 239.99897 * 22 20 18 26 26 C 1.47149 * 120.97894 * 179.71842 * 10 8 6 27 27 C 1.54633 * 101.76342 * 25.37218 * 6 5 4 28 28 C 1.34570 * 124.43540 * 269.92356 * 4 3 2 29 29 O 1.21271 * 124.91608 * 0.45396 * 28 4 3 30 30 H 1.08996 * 109.48069 * 300.00383 * 1 2 3 31 31 H 1.09007 * 109.46773 * 60.00571 * 1 2 3 32 32 H 1.09005 * 109.47027 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47426 * 239.99273 * 2 1 3 34 34 H 1.09007 * 109.46773 * 119.99429 * 2 1 3 35 35 H 1.08991 * 109.47036 * 59.99702 * 3 2 1 36 36 H 1.08998 * 109.46748 * 299.99293 * 3 2 1 37 37 H 1.09002 * 110.24468 * 43.97969 * 5 4 3 38 38 H 1.09002 * 110.24463 * 282.06727 * 5 4 3 39 39 H 1.09000 * 109.68173 * 249.16865 * 11 10 8 40 40 H 1.09001 * 109.68470 * 9.68196 * 11 10 8 41 41 H 1.08999 * 109.51237 * 172.22303 * 12 11 10 42 42 H 1.08998 * 109.51453 * 292.37857 * 12 11 10 43 43 H 1.08991 * 109.47820 * 184.99799 * 16 14 13 44 44 H 1.09000 * 109.46722 * 305.00122 * 16 14 13 45 45 H 0.97001 * 119.99667 * 0.02562 * 17 16 14 46 46 H 0.96997 * 120.00207 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.68517 * 350.28048 * 26 10 8 48 48 H 1.09006 * 109.68018 * 110.83763 * 26 10 8 49 49 H 1.09002 * 110.48603 * 93.88148 * 27 6 5 50 50 H 1.08998 * 110.48250 * 216.39069 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3336 1.4423 -1.2108 6 6 5.7422 1.8769 -0.7490 7 1 5.8691 2.9551 -0.8460 8 6 6.8116 1.1399 -1.5133 9 8 6.5019 0.3303 -2.3616 10 7 8.1122 1.3811 -1.2549 11 6 8.5123 2.3591 -0.2309 12 6 9.5294 1.6929 0.7028 13 8 10.5832 1.1242 -0.0783 14 6 10.1588 0.0898 -0.9690 15 1 9.6697 -0.7017 -0.4012 16 6 11.3732 -0.4833 -1.7023 17 7 12.2596 -1.1412 -0.7391 18 6 13.4184 -1.7321 -1.1675 19 1 13.6790 -1.7127 -2.2154 20 6 14.2578 -2.3559 -0.2549 21 7 13.9400 -2.3800 1.0221 22 14 15.8388 -3.1612 -0.8392 23 1 15.9645 -2.9960 -2.3097 24 1 16.9983 -2.5198 -0.1687 25 1 15.8110 -4.6075 -0.5037 26 6 9.1740 0.6694 -1.9839 27 6 5.7315 1.4525 0.7379 28 6 4.2654 1.4442 1.1108 29 8 3.8373 1.4380 2.2454 30 1 -0.3635 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9391 2.1523 -1.9377 38 1 4.3700 0.4421 -1.6426 39 1 8.9665 3.2267 -0.7094 40 1 7.6380 2.6709 0.3405 41 1 9.9417 2.4380 1.3831 42 1 9.0371 0.9077 1.2766 43 1 11.0406 -1.2089 -2.4444 44 1 11.9118 0.3237 -2.1991 45 1 12.0253 -1.1590 0.2020 46 1 14.5265 -2.8163 1.6597 47 1 8.7377 -0.1378 -2.5725 48 1 9.6962 1.3637 -2.6423 49 1 6.1602 0.4570 0.8536 50 1 6.2774 2.1748 1.3447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717181093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:16 Heat of formation + Delta-G solvation = -93.510801 kcal Electronic energy + Delta-G solvation = -30187.793308 eV Core-core repulsion = 26022.661684 eV Total energy + Delta-G solvation = -4165.131624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.39895 -40.04594 -38.47291 -36.72018 -35.41643 -35.02333 -34.47172 -32.47651 -31.76667 -30.19668 -28.51666 -27.96078 -26.92765 -25.62933 -23.61904 -23.50192 -22.23627 -22.06318 -20.92989 -19.92246 -19.22473 -18.02504 -17.18588 -17.10227 -16.62536 -16.51609 -16.04998 -15.56275 -15.48471 -15.17529 -14.91384 -14.67880 -14.46267 -14.22983 -13.99151 -13.95770 -13.75104 -13.38926 -13.16719 -13.08500 -12.74473 -12.58853 -12.46032 -12.23807 -12.14701 -11.97953 -11.87197 -11.70687 -11.64388 -11.13250 -11.05916 -10.91035 -10.81869 -10.55291 -10.36059 -10.08106 -9.96287 -9.90496 -9.70107 -9.10949 -8.88412 -8.67429 -6.90564 -5.73962 -3.02901 2.17026 2.24765 2.41139 2.68555 3.45151 3.50454 3.52952 3.71366 3.83831 3.87737 4.12515 4.38503 4.48889 4.53794 4.55571 4.59258 4.66772 4.73648 4.83196 4.96843 4.98118 5.02464 5.06523 5.08561 5.17062 5.22411 5.27400 5.32939 5.40487 5.47762 5.58126 5.58978 5.61609 5.64242 5.68260 5.81110 5.82142 5.88842 6.12947 6.17147 6.24795 6.52461 6.65906 6.67767 7.05059 7.40014 7.71511 7.76409 7.80498 8.43998 9.55854 10.12445 10.48023 11.48846 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.002092 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.183142 B =13377.957394 C =13454.996170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.620 5.620 5 C 0.117 3.883 6 C -0.123 4.123 7 H 0.119 0.881 8 C 0.528 3.472 9 O -0.532 6.532 10 N -0.607 5.607 11 C 0.065 3.935 12 C 0.045 3.955 13 O -0.356 6.356 14 C 0.073 3.927 15 H 0.064 0.936 16 C 0.163 3.837 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.085 3.915 27 C -0.147 4.147 28 C 0.521 3.479 29 O -0.526 6.526 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.030 0.970 45 H 0.387 0.613 46 H 0.254 0.746 47 H 0.103 0.897 48 H 0.080 0.920 49 H 0.111 0.889 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.120 13.444 -3.693 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C 0.006 3.994 4 N -0.354 5.354 5 C -0.006 4.006 6 C -0.145 4.145 7 H 0.137 0.863 8 C 0.315 3.685 9 O -0.409 6.409 10 N -0.341 5.341 11 C -0.058 4.058 12 C -0.034 4.034 13 O -0.274 6.274 14 C 0.014 3.986 15 H 0.082 0.918 16 C 0.035 3.965 17 N -0.371 5.371 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.037 4.037 27 C -0.188 4.188 28 C 0.309 3.691 29 O -0.402 6.402 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.221 0.779 46 H 0.064 0.936 47 H 0.121 0.879 48 H 0.098 0.902 49 H 0.130 0.870 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -25.267 13.014 -3.657 28.656 hybrid contribution 0.645 -0.429 0.026 0.775 sum -24.621 12.585 -3.631 27.889 Atomic orbital electron populations 1.21688 0.94864 1.02208 1.01925 1.21934 0.96374 0.96987 1.02964 1.21468 0.77380 0.97336 1.03242 1.48373 1.06394 1.73542 1.07127 1.21988 0.87589 1.04027 0.86983 1.22223 0.94555 1.02355 0.95397 0.86350 1.20029 0.82798 0.82523 0.83133 1.90724 1.81390 1.35053 1.33733 1.48102 1.05421 1.41537 1.39032 1.22698 1.00065 0.92251 0.90823 1.22926 0.89390 0.98077 0.92968 1.88180 1.31723 1.52862 1.54641 1.22720 0.95970 0.89246 0.90641 0.91840 1.20614 0.88767 0.94746 0.92352 1.42233 1.22711 1.65833 1.06317 1.19267 0.97160 1.27406 0.93214 0.91057 1.24751 0.99191 1.01663 0.95410 1.69681 1.38441 1.49032 1.00836 0.86105 0.83477 0.78846 0.77673 1.20540 1.21871 1.21904 1.22300 0.88114 0.98114 0.95210 1.22479 0.95783 1.05764 0.94743 1.20744 0.88740 0.75182 0.84455 1.90746 1.78435 1.50072 1.20956 0.92468 0.92537 0.92273 0.91489 0.91467 0.89885 0.90191 0.89643 0.88858 0.90019 0.88846 0.87607 0.92678 0.94640 0.95245 0.77909 0.93583 0.87881 0.90206 0.87038 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.15 0.37 -0.45 16 2 C -0.14 -1.02 6.26 -26.73 -0.17 -1.18 16 3 C 0.13 0.88 5.94 -4.04 -0.02 0.85 16 4 N -0.62 -5.13 2.94 -172.37 -0.51 -5.63 16 5 C 0.12 0.85 6.71 -3.12 -0.02 0.83 16 6 C -0.12 -0.88 2.53 -90.14 -0.23 -1.11 16 7 H 0.12 0.56 7.87 -51.93 -0.41 0.15 16 8 C 0.53 5.58 6.99 -10.98 -0.08 5.51 16 9 O -0.53 -7.43 14.97 5.56 0.08 -7.34 16 10 N -0.61 -6.50 3.03 -172.56 -0.52 -7.02 16 11 C 0.06 0.54 6.30 -3.54 -0.02 0.51 16 12 C 0.04 0.49 6.99 37.31 0.26 0.75 16 13 O -0.36 -5.82 10.33 -35.23 -0.36 -6.18 16 14 C 0.07 1.18 2.80 -26.82 -0.07 1.10 16 15 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 16 C 0.16 3.26 5.93 -4.04 -0.02 3.23 16 17 N -0.73 -18.68 5.55 -59.91 -0.33 -19.01 16 18 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 22 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C 0.09 1.11 5.90 -3.77 -0.02 1.08 16 27 C -0.15 -1.15 5.46 -26.74 -0.15 -1.29 16 28 C 0.52 5.39 8.03 -10.79 -0.09 5.31 16 29 O -0.53 -7.45 17.60 5.56 0.10 -7.35 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.83 6.96 -51.93 -0.36 0.47 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.51 4.21 -51.93 -0.22 0.29 16 41 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.39 10.60 7.67 -40.82 -0.31 10.28 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.10 1.41 7.08 -51.93 -0.37 1.04 16 48 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 49 H 0.11 0.97 7.89 -51.93 -0.41 0.56 16 50 H 0.11 0.67 6.65 -51.93 -0.35 0.33 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -36.03 399.95 -8.63 -44.65 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.30 Total: 4.39 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -0.51 Total: 7.72 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.64 Total: -59.47 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.18 Total: -20.87 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.03 -8.63 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717181093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.858 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds