Wall clock time and date at job start Wed Apr 1 2020 00:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47089 * 2 1 4 4 N 1.46494 * 109.47030 * 179.97438 * 3 2 1 5 5 C 1.46768 * 124.35072 * 89.99750 * 4 3 2 6 6 C 1.54480 * 105.55098 * 163.02465 * 5 4 3 7 7 H 1.08997 * 110.96887 * 267.25550 * 6 5 4 8 8 C 1.50694 * 110.97029 * 143.52835 * 6 5 4 9 9 O 1.21277 * 120.00262 * 0.02562 * 8 6 5 10 10 N 1.34786 * 120.00006 * 179.97438 * 8 6 5 11 11 C 1.47144 * 120.98065 * 0.02562 * 10 8 6 12 12 C 1.53294 * 108.38597 * 129.44157 * 11 10 8 13 13 O 1.42968 * 109.22027 * 52.30028 * 12 11 10 14 14 C 1.42958 * 114.16554 * 297.42202 * 13 12 11 15 15 H 1.09003 * 109.51417 * 302.60000 * 14 13 12 16 16 C 1.53000 * 109.51344 * 182.50722 * 14 13 12 17 17 N 1.46500 * 109.47259 * 64.99269 * 16 14 13 18 18 C 1.36944 * 120.00128 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99974 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99692 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00586 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99578 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47493 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47343 * 120.00349 * 22 20 18 25 25 H 1.48499 * 109.47336 * 239.99897 * 22 20 18 26 26 C 1.47149 * 120.97894 * 179.71842 * 10 8 6 27 27 C 1.54633 * 101.76342 * 25.37218 * 6 5 4 28 28 C 1.34570 * 124.43540 * 269.92356 * 4 3 2 29 29 O 1.21271 * 124.91608 * 0.45396 * 28 4 3 30 30 H 1.08996 * 109.48069 * 300.00383 * 1 2 3 31 31 H 1.09007 * 109.46773 * 60.00571 * 1 2 3 32 32 H 1.09005 * 109.47027 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47426 * 239.99273 * 2 1 3 34 34 H 1.09007 * 109.46773 * 119.99429 * 2 1 3 35 35 H 1.08991 * 109.47036 * 59.99702 * 3 2 1 36 36 H 1.08998 * 109.46748 * 299.99293 * 3 2 1 37 37 H 1.09002 * 110.24468 * 43.97969 * 5 4 3 38 38 H 1.09002 * 110.24463 * 282.06727 * 5 4 3 39 39 H 1.09000 * 109.68173 * 249.16865 * 11 10 8 40 40 H 1.09001 * 109.68470 * 9.68196 * 11 10 8 41 41 H 1.08999 * 109.51237 * 172.22303 * 12 11 10 42 42 H 1.08998 * 109.51453 * 292.37857 * 12 11 10 43 43 H 1.08991 * 109.47820 * 184.99799 * 16 14 13 44 44 H 1.09000 * 109.46722 * 305.00122 * 16 14 13 45 45 H 0.97001 * 119.99667 * 0.02562 * 17 16 14 46 46 H 0.96997 * 120.00207 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.68517 * 350.28048 * 26 10 8 48 48 H 1.09006 * 109.68018 * 110.83763 * 26 10 8 49 49 H 1.09002 * 110.48603 * 93.88148 * 27 6 5 50 50 H 1.08998 * 110.48250 * 216.39069 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3336 1.4423 -1.2108 6 6 5.7422 1.8769 -0.7490 7 1 5.8691 2.9551 -0.8460 8 6 6.8116 1.1399 -1.5133 9 8 6.5019 0.3303 -2.3616 10 7 8.1122 1.3811 -1.2549 11 6 8.5123 2.3591 -0.2309 12 6 9.5294 1.6929 0.7028 13 8 10.5832 1.1242 -0.0783 14 6 10.1588 0.0898 -0.9690 15 1 9.6697 -0.7017 -0.4012 16 6 11.3732 -0.4833 -1.7023 17 7 12.2596 -1.1412 -0.7391 18 6 13.4184 -1.7321 -1.1675 19 1 13.6790 -1.7127 -2.2154 20 6 14.2578 -2.3559 -0.2549 21 7 13.9400 -2.3800 1.0221 22 14 15.8388 -3.1612 -0.8392 23 1 15.9645 -2.9960 -2.3097 24 1 16.9983 -2.5198 -0.1687 25 1 15.8110 -4.6075 -0.5037 26 6 9.1740 0.6694 -1.9839 27 6 5.7315 1.4525 0.7379 28 6 4.2654 1.4442 1.1108 29 8 3.8373 1.4380 2.2454 30 1 -0.3635 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9391 2.1523 -1.9377 38 1 4.3700 0.4421 -1.6426 39 1 8.9665 3.2267 -0.7094 40 1 7.6380 2.6709 0.3405 41 1 9.9417 2.4380 1.3831 42 1 9.0371 0.9077 1.2766 43 1 11.0406 -1.2089 -2.4444 44 1 11.9118 0.3237 -2.1991 45 1 12.0253 -1.1590 0.2020 46 1 14.5265 -2.8163 1.6597 47 1 8.7377 -0.1378 -2.5725 48 1 9.6962 1.3637 -2.6423 49 1 6.1602 0.4570 0.8536 50 1 6.2774 2.1748 1.3447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717181093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:15 Heat of formation + Delta-G solvation = -119.494765 kcal Electronic energy + Delta-G solvation = -30188.920057 eV Core-core repulsion = 26022.661684 eV Total energy + Delta-G solvation = -4166.258373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.17106 -40.94113 -39.51980 -37.52943 -36.70048 -35.96073 -35.65450 -33.95236 -32.67959 -31.70376 -29.47010 -28.75393 -27.81755 -26.84527 -25.02957 -24.42512 -23.40147 -22.74752 -22.19102 -20.64881 -20.03691 -19.25913 -18.69519 -17.93092 -17.66889 -17.33395 -17.03316 -16.65700 -16.45370 -16.19861 -15.97291 -15.82997 -15.55141 -15.09498 -15.02804 -14.87523 -14.73326 -14.61754 -14.27827 -14.09987 -13.96291 -13.77925 -13.32611 -13.10226 -12.90799 -12.81138 -12.78253 -12.61526 -12.59712 -12.48441 -12.25403 -12.19341 -12.01321 -11.86182 -11.69369 -11.57936 -11.25583 -11.12733 -10.96884 -10.76329 -9.79682 -9.63825 -9.00751 -7.94376 -5.23767 1.37514 1.44510 1.47945 1.49220 1.59351 1.64451 1.98892 2.56386 2.77087 3.01687 3.23027 3.39876 3.48302 3.58553 3.77798 3.88421 3.94718 3.97043 4.00919 4.05209 4.07814 4.17678 4.30918 4.33881 4.40770 4.45088 4.50245 4.53452 4.58634 4.62090 4.68052 4.73463 4.77973 4.82650 4.89897 4.91844 4.97321 5.10894 5.12618 5.14523 5.24991 5.30187 5.49110 5.52862 5.99330 6.23242 6.25209 6.29028 6.95655 7.03002 7.33374 8.07705 8.31581 9.29521 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.002092 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.183142 B =13377.957394 C =13454.996170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.123 3.877 4 N -0.615 5.615 5 C 0.117 3.883 6 C -0.109 4.109 7 H 0.158 0.842 8 C 0.529 3.471 9 O -0.570 6.570 10 N -0.608 5.608 11 C 0.071 3.929 12 C 0.034 3.966 13 O -0.388 6.388 14 C 0.087 3.913 15 H 0.045 0.955 16 C 0.159 3.841 17 N -0.741 5.741 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.096 3.904 27 C -0.143 4.143 28 C 0.514 3.486 29 O -0.573 6.573 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.050 0.950 43 H 0.043 0.957 44 H 0.032 0.968 45 H 0.374 0.626 46 H 0.251 0.749 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.013 15.594 -5.128 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.002 3.998 4 N -0.347 5.347 5 C -0.005 4.005 6 C -0.131 4.131 7 H 0.176 0.824 8 C 0.317 3.683 9 O -0.449 6.449 10 N -0.341 5.341 11 C -0.051 4.051 12 C -0.043 4.043 13 O -0.307 6.307 14 C 0.028 3.972 15 H 0.063 0.937 16 C 0.032 3.968 17 N -0.384 5.384 18 C -0.377 4.377 19 H 0.097 0.903 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.221 1.221 26 C -0.027 4.027 27 C -0.183 4.183 28 C 0.302 3.698 29 O -0.453 6.453 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.206 0.794 46 H 0.060 0.940 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.117 0.883 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.190 15.198 -5.152 30.715 hybrid contribution 0.852 -1.088 0.454 1.454 sum -25.338 14.111 -4.698 29.380 Atomic orbital electron populations 1.21665 0.93463 1.02446 1.02729 1.21890 0.97614 0.96991 1.01485 1.21627 0.76703 0.97207 1.04287 1.48504 1.07056 1.72161 1.07022 1.22064 0.87724 1.03924 0.86836 1.22237 0.92991 1.03951 0.93877 0.82409 1.20566 0.83062 0.81934 0.82703 1.90718 1.81907 1.36658 1.35571 1.48165 1.05066 1.41622 1.39247 1.22833 1.00695 0.91515 0.90019 1.23257 0.89228 0.98452 0.93410 1.88113 1.34469 1.52782 1.55308 1.22367 0.94577 0.89249 0.91033 0.93691 1.20779 0.89472 0.94607 0.91928 1.42439 1.23049 1.66240 1.06636 1.19710 0.97813 1.26547 0.93581 0.90282 1.25624 1.02773 1.03062 0.95613 1.69844 1.39729 1.50511 1.02005 0.85025 0.79153 0.77312 0.77955 1.18807 1.22016 1.22084 1.21987 0.88128 0.98319 0.94304 1.22480 0.94298 1.05941 0.95593 1.21153 0.89923 0.74539 0.84165 1.90720 1.79360 1.52410 1.22764 0.92471 0.90880 0.92369 0.91613 0.94244 0.90705 0.87188 0.86715 0.90746 0.88306 0.85336 0.85529 0.93165 0.93900 0.95010 0.79407 0.94045 0.88843 0.89127 0.88267 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.14 -1.94 6.26 30.59 0.19 -1.75 16 3 C 0.12 1.51 5.94 86.38 0.51 2.02 16 4 N -0.61 -9.14 2.94 -817.78 -2.40 -11.54 16 5 C 0.12 1.39 6.71 86.83 0.58 1.97 16 6 C -0.11 -1.19 2.53 -10.48 -0.03 -1.22 16 7 H 0.16 0.58 7.87 -2.39 -0.02 0.57 16 8 C 0.53 10.01 6.99 87.65 0.61 10.62 16 9 O -0.57 -15.30 14.97 -3.02 -0.05 -15.35 16 10 N -0.61 -11.65 3.03 -818.25 -2.48 -14.13 16 11 C 0.07 0.94 6.30 86.35 0.54 1.48 16 12 C 0.03 0.68 6.99 72.08 0.50 1.19 16 13 O -0.39 -12.49 10.33 -148.98 -1.54 -14.03 16 14 C 0.09 2.81 2.80 30.54 0.09 2.89 16 15 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 16 C 0.16 6.39 5.93 86.38 0.51 6.90 16 17 N -0.74 -38.84 5.55 -343.46 -1.91 -40.74 16 18 C -0.24 -13.94 9.99 84.03 0.84 -13.10 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 20 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 21 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 22 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 26 C 0.10 2.40 5.90 86.20 0.51 2.91 16 27 C -0.14 -1.91 5.46 30.59 0.17 -1.74 16 28 C 0.51 10.08 8.03 87.87 0.71 10.79 16 29 O -0.57 -16.29 17.60 -3.00 -0.05 -16.34 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.07 1.07 7.93 -2.39 -0.02 1.06 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 1.23 6.96 -2.39 -0.02 1.21 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 0.78 4.21 -2.39 -0.01 0.77 16 41 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.37 21.18 7.67 -92.71 -0.71 20.46 16 46 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 47 H 0.09 2.53 7.08 -2.38 -0.02 2.51 16 48 H 0.09 2.08 8.13 -2.38 -0.02 2.06 16 49 H 0.10 1.64 7.89 -2.39 -0.02 1.62 16 50 H 0.14 1.14 6.65 -2.39 -0.02 1.12 16 Total: -1.00 -81.18 399.95 1.04 -80.15 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.23 Total: 25.54 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 6.92 Total: 18.09 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -6.50 Total: -126.85 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -1.64 Total: -45.72 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -81.18 1.04 -80.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717181093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.347 kcal (2) G-P(sol) polarization free energy of solvation -81.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds