Wall clock time and date at job start Wed Apr 1 2020 00:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47355 * 2 1 4 4 N 1.46496 * 109.47446 * 180.02562 * 3 2 1 5 5 C 1.46823 * 124.32989 * 270.01602 * 4 3 2 6 6 C 1.54479 * 105.44633 * 163.00153 * 5 4 3 7 7 H 1.09006 * 110.96825 * 267.23491 * 6 5 4 8 8 C 1.50694 * 110.97301 * 143.50520 * 6 5 4 9 9 O 1.21278 * 120.00371 * 3.08769 * 8 6 5 10 10 N 1.34784 * 119.99898 * 183.08652 * 8 6 5 11 11 C 1.47154 * 120.98243 * 0.02562 * 10 8 6 12 12 C 1.53290 * 108.38143 * 230.50937 * 11 10 8 13 13 O 1.42961 * 109.22658 * 307.69928 * 12 11 10 14 14 C 1.42957 * 114.16605 * 62.57980 * 13 12 11 15 15 H 1.09002 * 109.51218 * 57.34557 * 14 13 12 16 16 C 1.53000 * 109.51036 * 177.44923 * 14 13 12 17 17 N 1.46510 * 109.46944 * 299.89627 * 16 14 13 18 18 C 1.36939 * 119.99900 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99715 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99784 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00086 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00090 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47221 * 59.99660 * 22 20 18 24 24 H 1.48492 * 109.47188 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46586 * 300.00017 * 22 20 18 26 26 C 1.47151 * 120.98296 * 179.97438 * 10 8 6 27 27 C 1.54631 * 101.79927 * 25.36513 * 6 5 4 28 28 C 1.34414 * 124.35556 * 89.97429 * 4 3 2 29 29 O 1.21281 * 124.93763 * 0.37564 * 28 4 3 30 30 H 1.09002 * 109.47075 * 60.00074 * 1 2 3 31 31 H 1.08992 * 109.46970 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46739 * 300.00458 * 1 2 3 33 33 H 1.08999 * 109.47458 * 240.00077 * 2 1 3 34 34 H 1.08995 * 109.47434 * 119.99841 * 2 1 3 35 35 H 1.09003 * 109.47463 * 59.99507 * 3 2 1 36 36 H 1.09002 * 109.46969 * 299.99991 * 3 2 1 37 37 H 1.08999 * 110.28631 * 43.99039 * 5 4 3 38 38 H 1.09003 * 110.23551 * 281.97179 * 5 4 3 39 39 H 1.08996 * 109.68104 * 110.78398 * 11 10 8 40 40 H 1.09000 * 109.71269 * 350.25368 * 11 10 8 41 41 H 1.09000 * 109.51037 * 187.77023 * 12 11 10 42 42 H 1.09008 * 109.50994 * 67.62372 * 12 11 10 43 43 H 1.08991 * 109.47794 * 59.89564 * 16 14 13 44 44 H 1.08999 * 109.47035 * 179.90530 * 16 14 13 45 45 H 0.96994 * 119.99895 * 0.02562 * 17 16 14 46 46 H 0.97000 * 119.99686 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.67681 * 9.76712 * 26 10 8 48 48 H 1.08997 * 109.68366 * 249.21397 * 26 10 8 49 49 H 1.08999 * 110.48479 * 93.89997 * 27 6 5 50 50 H 1.08992 * 110.48936 * 216.55000 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3336 1.4420 1.2115 6 6 5.7413 1.0069 0.7474 7 1 5.8678 -0.0715 0.8437 8 6 6.8122 1.7430 1.5105 9 8 6.5056 2.5111 2.3976 10 7 8.1109 1.5478 1.2070 11 6 8.5072 0.6215 0.1346 12 6 9.5749 -0.3296 0.6873 13 8 10.6239 0.4364 1.2846 14 6 10.2093 1.2245 2.4029 15 1 9.7647 0.5777 3.1593 16 6 11.4205 1.9469 2.9960 17 7 12.4099 0.9604 3.4369 18 6 13.5852 1.3756 4.0040 19 1 13.7825 2.4303 4.1265 20 6 14.5227 0.4409 4.4212 21 7 14.2823 -0.8445 4.2714 22 14 16.1257 1.0072 5.1954 23 1 15.8330 1.7935 6.4207 24 1 16.9490 -0.1763 5.5509 25 1 16.8695 1.8549 4.2292 26 6 9.1742 2.2556 1.9377 27 6 5.7296 1.4321 -0.7392 28 6 4.2631 1.4422 -1.1106 29 8 3.8338 1.4484 -2.2449 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9396 0.7316 1.9383 38 1 4.3712 2.4423 1.6429 39 1 8.9160 1.1845 -0.7044 40 1 7.6406 0.0486 -0.1954 41 1 9.9812 -0.9323 -0.1249 42 1 9.1279 -0.9820 1.4375 43 1 11.8646 2.5934 2.2392 44 1 11.1034 2.5489 3.8476 45 1 12.2327 0.0132 3.3265 46 1 14.9377 -1.4976 4.5626 47 1 8.7488 2.7649 2.8025 48 1 9.6500 2.9829 1.2800 49 1 6.1592 2.4271 -0.8548 50 1 6.2721 0.7083 -1.3473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717181094.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:18 Heat of formation + Delta-G solvation = -119.741100 kcal Electronic energy + Delta-G solvation = -30010.808250 eV Core-core repulsion = 25844.539196 eV Total energy + Delta-G solvation = -4166.269055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.15526 -40.93469 -39.50366 -37.51573 -36.67735 -35.94355 -35.62420 -33.92160 -32.66170 -31.69213 -29.40718 -28.77421 -27.81115 -26.81706 -24.99857 -24.48730 -23.35857 -22.73498 -22.07470 -20.63780 -20.08713 -19.21515 -18.63488 -17.97532 -17.69857 -17.28997 -17.06150 -16.64267 -16.43614 -16.12641 -15.94538 -15.76993 -15.55157 -15.09170 -15.00767 -14.83840 -14.72903 -14.65263 -14.27053 -14.08469 -13.91302 -13.67048 -13.31730 -13.10505 -12.95672 -12.80945 -12.73597 -12.60999 -12.55974 -12.46481 -12.25496 -12.20901 -12.04987 -11.85469 -11.67232 -11.56945 -11.21865 -11.12587 -10.92776 -10.74259 -9.79042 -9.63079 -8.98674 -7.92521 -5.21660 1.39666 1.46444 1.48906 1.52446 1.58332 1.65000 1.99241 2.57905 2.79329 3.01921 3.23429 3.41170 3.47475 3.60986 3.79003 3.90785 3.96346 3.99805 4.01692 4.03022 4.09658 4.21697 4.32729 4.35705 4.43935 4.47206 4.50488 4.54781 4.58765 4.64426 4.69247 4.75853 4.80255 4.83225 4.91289 4.91766 4.98072 5.12198 5.14597 5.17751 5.24930 5.31800 5.49811 5.52941 6.01395 6.23705 6.26696 6.31504 6.95884 7.04675 7.35405 8.10113 8.34529 9.30818 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.001929 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.567355 B =14514.557985 C =14656.912633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.120 3.880 4 N -0.615 5.615 5 C 0.119 3.881 6 C -0.112 4.112 7 H 0.150 0.850 8 C 0.530 3.470 9 O -0.569 6.569 10 N -0.608 5.608 11 C 0.072 3.928 12 C 0.035 3.965 13 O -0.389 6.389 14 C 0.088 3.912 15 H 0.050 0.950 16 C 0.158 3.842 17 N -0.739 5.739 18 C -0.249 4.249 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.976 3.024 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.096 3.904 27 C -0.138 4.138 28 C 0.513 3.487 29 O -0.573 6.573 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.054 0.946 43 H 0.029 0.971 44 H 0.043 0.957 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.110 0.890 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.847 1.466 -10.595 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.347 5.347 5 C -0.004 4.004 6 C -0.133 4.133 7 H 0.167 0.833 8 C 0.318 3.682 9 O -0.448 6.448 10 N -0.341 5.341 11 C -0.050 4.050 12 C -0.042 4.042 13 O -0.308 6.308 14 C 0.029 3.971 15 H 0.068 0.932 16 C 0.031 3.969 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.805 3.195 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.204 1.204 26 C -0.028 4.028 27 C -0.178 4.178 28 C 0.302 3.698 29 O -0.453 6.453 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.208 0.792 46 H 0.060 0.940 47 H 0.113 0.887 48 H 0.104 0.896 49 H 0.128 0.872 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.027 2.020 -10.711 29.142 hybrid contribution 0.856 -0.191 0.574 1.049 sum -26.171 1.830 -10.137 28.125 Atomic orbital electron populations 1.21683 0.93943 1.02543 1.02408 1.21844 0.97170 0.96155 1.02177 1.21615 0.76917 0.97929 1.03697 1.48485 1.07000 1.72170 1.07081 1.22034 0.87679 1.03893 0.86804 1.22209 0.92995 1.03530 0.94590 0.83289 1.20530 0.83043 0.81620 0.82964 1.90718 1.81953 1.38767 1.33409 1.48163 1.05179 1.44356 1.36373 1.22831 1.00334 0.92264 0.89586 1.23252 0.88905 0.93249 0.98772 1.88119 1.35487 1.61005 1.46175 1.22461 0.94275 0.92373 0.87998 0.93153 1.20791 0.88244 0.91836 0.96014 1.42384 1.17676 1.05072 1.73079 1.19632 0.94875 0.92696 1.30825 0.90470 1.25596 1.02390 0.95415 1.03411 1.69831 1.36968 1.00534 1.54568 0.85177 0.79341 0.76533 0.78473 1.20295 1.22129 1.20402 1.22094 0.87745 0.94504 0.98440 1.22474 0.94079 1.06407 0.94882 1.21170 0.90071 0.74506 0.84078 1.90721 1.79359 1.52547 1.22718 0.92824 0.91923 0.91390 0.93371 0.90753 0.88203 0.91232 0.87594 0.90198 0.88733 0.85216 0.85734 0.92728 0.95317 0.93970 0.79247 0.94034 0.88666 0.89553 0.87231 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.50 16 2 C -0.13 -1.43 6.26 30.59 0.19 -1.24 16 3 C 0.12 1.45 5.93 86.38 0.51 1.96 16 4 N -0.61 -8.76 2.93 -817.84 -2.40 -11.16 16 5 C 0.12 1.41 6.69 86.82 0.58 2.00 16 6 C -0.11 -1.23 2.54 -10.48 -0.03 -1.25 16 7 H 0.15 0.83 7.66 -2.38 -0.02 0.82 16 8 C 0.53 9.93 7.01 87.65 0.61 10.54 16 9 O -0.57 -15.10 15.00 -3.02 -0.05 -15.15 16 10 N -0.61 -11.58 3.02 -817.29 -2.47 -14.05 16 11 C 0.07 0.95 5.86 86.35 0.51 1.46 16 12 C 0.04 0.70 6.98 72.08 0.50 1.20 16 13 O -0.39 -12.48 10.13 -148.98 -1.51 -13.99 16 14 C 0.09 2.79 2.86 30.70 0.09 2.88 16 15 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 16 C 0.16 6.31 5.96 86.38 0.51 6.83 16 17 N -0.74 -38.40 5.50 -343.45 -1.89 -40.29 16 18 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 22 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 C 0.10 2.38 5.93 86.37 0.51 2.89 16 27 C -0.14 -1.56 5.33 30.59 0.16 -1.40 16 28 C 0.51 9.28 8.02 87.90 0.71 9.98 16 29 O -0.57 -15.28 17.59 -3.03 -0.05 -15.33 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 1.05 7.92 -2.39 -0.02 1.03 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.24 7.01 -2.39 -0.02 1.22 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.13 0.75 4.75 -2.39 -0.01 0.74 16 41 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.38 20.97 7.55 -92.71 -0.70 20.27 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.10 2.53 7.08 -2.38 -0.02 2.51 16 48 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.11 1.33 7.89 -2.39 -0.02 1.31 16 50 H 0.14 0.89 6.91 -2.39 -0.02 0.88 16 Total: -1.00 -79.31 399.78 1.07 -78.24 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.24 Total: 24.77 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 6.88 Total: 18.17 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -6.47 Total: -125.10 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.61 Total: -44.46 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -79.31 1.07 -78.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717181094.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.500 kcal (2) G-P(sol) polarization free energy of solvation -79.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds