Wall clock time and date at job start Wed Apr 1 2020 00:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47329 * 2 1 4 4 N 1.46493 * 109.47138 * 180.02562 * 3 2 1 5 5 C 1.46822 * 124.33207 * 269.97996 * 4 3 2 6 6 C 1.54478 * 105.44512 * 197.00235 * 5 4 3 7 7 H 1.09006 * 110.97179 * 92.76894 * 6 5 4 8 8 C 1.50702 * 110.97026 * 216.49252 * 6 5 4 9 9 O 1.21278 * 119.99843 * 356.91119 * 8 6 5 10 10 N 1.34775 * 120.00092 * 176.91164 * 8 6 5 11 11 C 1.47148 * 120.98308 * 359.97438 * 10 8 6 12 12 C 1.53297 * 108.38821 * 230.56929 * 11 10 8 13 13 O 1.42967 * 109.22049 * 307.69288 * 12 11 10 14 14 C 1.42969 * 114.16023 * 62.58191 * 13 12 11 15 15 H 1.08991 * 109.51644 * 57.39705 * 14 13 12 16 16 C 1.53005 * 109.50711 * 177.49868 * 14 13 12 17 17 N 1.46505 * 109.46904 * 299.89551 * 16 14 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31617 * 119.99873 * 180.27450 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 0.27770 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99559 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00079 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99901 * 22 20 18 26 26 C 1.47165 * 120.94431 * 180.02562 * 10 8 6 27 27 C 1.54627 * 101.80023 * 334.63249 * 6 5 4 28 28 C 1.34417 * 124.35477 * 90.02619 * 4 3 2 29 29 O 1.21282 * 124.93845 * 359.62013 * 28 4 3 30 30 H 1.09000 * 109.47397 * 59.99907 * 1 2 3 31 31 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46987 * 299.99848 * 1 2 3 33 33 H 1.08996 * 109.47248 * 239.99883 * 2 1 3 34 34 H 1.09008 * 109.47363 * 119.99819 * 2 1 3 35 35 H 1.08996 * 109.47051 * 59.99762 * 3 2 1 36 36 H 1.09008 * 109.46750 * 300.00194 * 3 2 1 37 37 H 1.08998 * 110.24068 * 78.02174 * 5 4 3 38 38 H 1.08999 * 110.28510 * 316.00683 * 5 4 3 39 39 H 1.09000 * 109.68217 * 110.83900 * 11 10 8 40 40 H 1.09001 * 109.68522 * 350.29060 * 11 10 8 41 41 H 1.08998 * 109.51460 * 187.77621 * 12 11 10 42 42 H 1.08992 * 109.51616 * 67.61980 * 12 11 10 43 43 H 1.09003 * 109.46946 * 179.90310 * 16 14 13 44 44 H 1.08993 * 109.47679 * 59.89852 * 16 14 13 45 45 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 46 46 H 0.97000 * 120.00553 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.73027 * 9.73752 * 26 10 8 48 48 H 1.09008 * 109.64728 * 249.17858 * 26 10 8 49 49 H 1.08993 * 110.48943 * 143.46121 * 27 6 5 50 50 H 1.09002 * 110.48175 * 266.10169 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3335 1.4427 1.2115 6 6 5.7412 1.8779 0.7474 7 1 5.8677 2.9563 0.8440 8 6 6.8122 1.1417 1.5103 9 8 6.5055 0.3735 2.3973 10 7 8.1108 1.3369 1.2069 11 6 8.5072 2.2634 0.1347 12 6 9.4789 1.5340 -0.8000 13 8 10.5394 0.9669 -0.0268 14 6 10.1134 -0.0205 0.9153 15 1 9.5873 -0.8193 0.3926 16 6 11.3328 -0.5982 1.6366 17 7 12.2317 -1.2158 0.6582 18 6 13.3967 -1.8030 1.0741 19 1 13.6528 -1.8113 2.1232 20 6 14.2455 -2.3932 0.1477 21 7 15.3627 -2.9624 0.5479 22 14 13.8023 -2.3795 -1.6669 23 1 14.3603 -1.1595 -2.3036 24 1 14.3693 -3.5845 -2.3240 25 1 12.3247 -2.3837 -1.8155 26 6 9.1735 0.6285 1.9381 27 6 5.7295 1.4532 -0.7393 28 6 4.2630 1.4431 -1.1106 29 8 3.8337 1.4372 -2.2449 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6766 1.9564 -0.8901 37 1 4.3711 0.4424 1.6428 38 1 3.9396 2.1530 1.9384 39 1 8.9978 3.1359 0.5662 40 1 7.6255 2.5766 -0.4245 41 1 9.8912 2.2408 -1.5200 42 1 8.9498 0.7414 -1.3288 43 1 11.0072 -1.3498 2.3558 44 1 11.8584 0.2010 2.1590 45 1 12.0014 -1.2087 -0.2840 46 1 15.9561 -3.3745 -0.0993 47 1 8.7336 -0.1411 2.5724 48 1 9.7308 1.3364 2.5516 49 1 6.2721 2.1771 -1.3472 50 1 6.1592 0.4581 -0.8551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717181096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:27 Heat of formation + Delta-G solvation = -88.197363 kcal Electronic energy + Delta-G solvation = -30324.183919 eV Core-core repulsion = 26159.282703 eV Total energy + Delta-G solvation = -4164.901216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48546 -40.12819 -38.58303 -36.77806 -35.53561 -35.12309 -34.61881 -32.52817 -31.82446 -30.57026 -28.66707 -28.06764 -27.06759 -25.81194 -23.73245 -23.42262 -22.23978 -21.90556 -21.05740 -19.99870 -19.30357 -18.13156 -17.57289 -17.24060 -16.71274 -16.62532 -16.14305 -15.68619 -15.54293 -15.27039 -14.93686 -14.80242 -14.40588 -14.31056 -14.15450 -14.01540 -13.89954 -13.44818 -13.23603 -13.10959 -12.81639 -12.63262 -12.56015 -12.29502 -12.23962 -12.04933 -11.98073 -11.80224 -11.75630 -11.28421 -11.17424 -11.13118 -10.85128 -10.62219 -10.41666 -10.20882 -10.07434 -9.96636 -9.57746 -9.17157 -8.89923 -8.78092 -7.22135 -5.75069 -3.10420 2.10979 2.18161 2.34090 2.61530 3.40387 3.44616 3.47673 3.63624 3.72083 3.77634 4.05431 4.32201 4.42884 4.48837 4.49683 4.52855 4.62013 4.64568 4.78933 4.84567 4.90854 4.92478 4.96740 5.01458 5.09948 5.12208 5.19547 5.27597 5.31784 5.41058 5.46686 5.51250 5.53988 5.57922 5.64023 5.66099 5.73591 5.77799 5.88529 6.05940 6.08650 6.41834 6.55189 6.62396 6.96725 7.23455 7.69910 7.73628 7.99870 8.43492 9.22797 9.95079 10.15163 11.43120 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018481 B = 0.002296 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.743356 B =12190.630886 C =12459.041621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.619 5.619 5 C 0.118 3.882 6 C -0.124 4.124 7 H 0.120 0.880 8 C 0.528 3.472 9 O -0.531 6.531 10 N -0.608 5.608 11 C 0.063 3.937 12 C 0.043 3.957 13 O -0.359 6.359 14 C 0.069 3.931 15 H 0.063 0.937 16 C 0.168 3.832 17 N -0.750 5.750 18 C -0.244 4.244 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.888 3.112 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.086 3.914 27 C -0.149 4.149 28 C 0.521 3.479 29 O -0.527 6.527 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.038 0.962 45 H 0.365 0.635 46 H 0.259 0.741 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.114 0.886 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.550 14.709 0.224 32.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.353 5.353 5 C -0.005 4.005 6 C -0.145 4.145 7 H 0.138 0.862 8 C 0.315 3.685 9 O -0.407 6.407 10 N -0.342 5.342 11 C -0.060 4.060 12 C -0.035 4.035 13 O -0.277 6.277 14 C 0.010 3.990 15 H 0.081 0.919 16 C 0.040 3.960 17 N -0.395 5.395 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.582 5.582 22 Si 0.718 3.282 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.205 1.205 26 C -0.037 4.037 27 C -0.189 4.189 28 C 0.308 3.692 29 O -0.403 6.403 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.198 0.802 46 H 0.069 0.931 47 H 0.123 0.877 48 H 0.100 0.900 49 H 0.132 0.868 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -28.646 14.265 0.243 32.002 hybrid contribution -0.358 -0.022 -1.268 1.317 sum -29.004 14.243 -1.024 32.329 Atomic orbital electron populations 1.21689 0.94830 1.02232 1.01950 1.21931 0.96413 0.96952 1.02939 1.21482 0.77352 0.97369 1.03292 1.48357 1.06456 1.73402 1.07126 1.21999 0.87543 1.04022 0.86957 1.22234 0.94581 1.02433 0.95291 0.86230 1.20040 0.82773 0.82115 0.83549 1.90732 1.81412 1.36863 1.31742 1.48103 1.05579 1.44191 1.36328 1.22728 1.00332 0.93193 0.89717 1.22952 0.89624 0.97706 0.93215 1.88164 1.31204 1.56138 1.52200 1.22881 0.96447 0.89804 0.89859 0.91885 1.20608 0.88136 0.95323 0.91928 1.42541 1.23065 1.69242 1.04700 1.19043 0.94917 1.28248 0.95173 0.89161 1.24663 0.96658 1.00292 0.97536 1.69702 1.12476 1.42642 1.33359 0.86498 0.77642 0.77220 0.86842 1.20995 1.21848 1.20468 1.22382 0.88216 0.97973 0.95096 1.22523 0.95866 1.05642 0.94873 1.20700 0.88753 0.75258 0.84476 1.90751 1.78381 1.50145 1.20991 0.92461 0.92256 0.92508 0.91494 0.91488 0.90141 0.89862 0.88894 0.89520 0.89888 0.88630 0.87518 0.92751 0.93799 0.94449 0.80211 0.93069 0.87720 0.89954 0.86792 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.14 -0.96 6.26 -26.73 -0.17 -1.13 16 3 C 0.13 0.82 5.93 -4.04 -0.02 0.80 16 4 N -0.62 -4.82 2.93 -172.37 -0.51 -5.33 16 5 C 0.12 0.79 6.69 -3.09 -0.02 0.77 16 6 C -0.12 -0.80 2.56 -90.14 -0.23 -1.03 16 7 H 0.12 0.50 8.02 -51.93 -0.42 0.08 16 8 C 0.53 5.21 7.01 -10.99 -0.08 5.14 16 9 O -0.53 -7.05 15.00 5.56 0.08 -6.97 16 10 N -0.61 -6.03 3.02 -172.25 -0.52 -6.55 16 11 C 0.06 0.47 6.26 -3.53 -0.02 0.45 16 12 C 0.04 0.43 6.99 37.31 0.26 0.69 16 13 O -0.36 -5.42 10.14 -35.23 -0.36 -5.77 16 14 C 0.07 1.03 2.86 -26.56 -0.08 0.95 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 16 C 0.17 3.17 5.96 -4.04 -0.02 3.15 16 17 N -0.75 -18.05 5.30 -59.90 -0.32 -18.36 16 18 C -0.24 -6.98 10.47 -15.06 -0.16 -7.13 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 22 Si 0.89 22.55 27.74 -169.99 -4.72 17.83 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 25 H -0.28 -6.69 6.51 56.52 0.37 -6.32 16 26 C 0.09 1.04 5.93 -3.51 -0.02 1.02 16 27 C -0.15 -1.05 5.30 -26.74 -0.14 -1.19 16 28 C 0.52 5.09 8.02 -10.86 -0.09 5.01 16 29 O -0.53 -7.18 17.59 5.56 0.10 -7.08 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.60 7.93 -51.92 -0.41 0.19 16 37 H 0.09 0.78 7.01 -51.93 -0.36 0.41 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.45 4.03 -51.93 -0.21 0.24 16 41 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.36 8.74 5.41 -40.82 -0.22 8.52 16 46 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 47 H 0.10 1.33 7.08 -51.93 -0.37 0.97 16 48 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 49 H 0.11 0.59 6.50 -51.93 -0.34 0.25 16 50 H 0.11 0.87 7.89 -51.93 -0.41 0.47 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -36.77 396.29 -8.25 -45.02 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.25 Total: 2.90 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -0.52 Total: 7.11 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.57 Total: -59.01 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.18 Total: -19.82 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.72 Total: 17.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.77 -8.25 -45.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717181096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.180 kcal (2) G-P(sol) polarization free energy of solvation -36.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds