Wall clock time and date at job start Wed Apr 1 2020 00:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47329 * 2 1 4 4 N 1.46493 * 109.47138 * 180.02562 * 3 2 1 5 5 C 1.46822 * 124.33207 * 269.97996 * 4 3 2 6 6 C 1.54478 * 105.44512 * 197.00235 * 5 4 3 7 7 H 1.09006 * 110.97179 * 92.76894 * 6 5 4 8 8 C 1.50702 * 110.97026 * 216.49252 * 6 5 4 9 9 O 1.21278 * 119.99843 * 356.91119 * 8 6 5 10 10 N 1.34775 * 120.00092 * 176.91164 * 8 6 5 11 11 C 1.47148 * 120.98308 * 359.97438 * 10 8 6 12 12 C 1.53297 * 108.38821 * 230.56929 * 11 10 8 13 13 O 1.42967 * 109.22049 * 307.69288 * 12 11 10 14 14 C 1.42969 * 114.16023 * 62.58191 * 13 12 11 15 15 H 1.08991 * 109.51644 * 57.39705 * 14 13 12 16 16 C 1.53005 * 109.50711 * 177.49868 * 14 13 12 17 17 N 1.46505 * 109.46904 * 299.89551 * 16 14 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31617 * 119.99873 * 180.27450 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 0.27770 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99559 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00079 * 22 20 18 25 25 H 1.48507 * 109.46904 * 329.99901 * 22 20 18 26 26 C 1.47165 * 120.94431 * 180.02562 * 10 8 6 27 27 C 1.54627 * 101.80023 * 334.63249 * 6 5 4 28 28 C 1.34417 * 124.35477 * 90.02619 * 4 3 2 29 29 O 1.21282 * 124.93845 * 359.62013 * 28 4 3 30 30 H 1.09000 * 109.47397 * 59.99907 * 1 2 3 31 31 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46987 * 299.99848 * 1 2 3 33 33 H 1.08996 * 109.47248 * 239.99883 * 2 1 3 34 34 H 1.09008 * 109.47363 * 119.99819 * 2 1 3 35 35 H 1.08996 * 109.47051 * 59.99762 * 3 2 1 36 36 H 1.09008 * 109.46750 * 300.00194 * 3 2 1 37 37 H 1.08998 * 110.24068 * 78.02174 * 5 4 3 38 38 H 1.08999 * 110.28510 * 316.00683 * 5 4 3 39 39 H 1.09000 * 109.68217 * 110.83900 * 11 10 8 40 40 H 1.09001 * 109.68522 * 350.29060 * 11 10 8 41 41 H 1.08998 * 109.51460 * 187.77621 * 12 11 10 42 42 H 1.08992 * 109.51616 * 67.61980 * 12 11 10 43 43 H 1.09003 * 109.46946 * 179.90310 * 16 14 13 44 44 H 1.08993 * 109.47679 * 59.89852 * 16 14 13 45 45 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 46 46 H 0.97000 * 120.00553 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.73027 * 9.73752 * 26 10 8 48 48 H 1.09008 * 109.64728 * 249.17858 * 26 10 8 49 49 H 1.08993 * 110.48943 * 143.46121 * 27 6 5 50 50 H 1.09002 * 110.48175 * 266.10169 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3335 1.4427 1.2115 6 6 5.7412 1.8779 0.7474 7 1 5.8677 2.9563 0.8440 8 6 6.8122 1.1417 1.5103 9 8 6.5055 0.3735 2.3973 10 7 8.1108 1.3369 1.2069 11 6 8.5072 2.2634 0.1347 12 6 9.4789 1.5340 -0.8000 13 8 10.5394 0.9669 -0.0268 14 6 10.1134 -0.0205 0.9153 15 1 9.5873 -0.8193 0.3926 16 6 11.3328 -0.5982 1.6366 17 7 12.2317 -1.2158 0.6582 18 6 13.3967 -1.8030 1.0741 19 1 13.6528 -1.8113 2.1232 20 6 14.2455 -2.3932 0.1477 21 7 15.3627 -2.9624 0.5479 22 14 13.8023 -2.3795 -1.6669 23 1 14.3603 -1.1595 -2.3036 24 1 14.3693 -3.5845 -2.3240 25 1 12.3247 -2.3837 -1.8155 26 6 9.1735 0.6285 1.9381 27 6 5.7295 1.4532 -0.7393 28 6 4.2630 1.4431 -1.1106 29 8 3.8337 1.4372 -2.2449 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6766 1.9564 -0.8901 37 1 4.3711 0.4424 1.6428 38 1 3.9396 2.1530 1.9384 39 1 8.9978 3.1359 0.5662 40 1 7.6255 2.5766 -0.4245 41 1 9.8912 2.2408 -1.5200 42 1 8.9498 0.7414 -1.3288 43 1 11.0072 -1.3498 2.3558 44 1 11.8584 0.2010 2.1590 45 1 12.0014 -1.2087 -0.2840 46 1 15.9561 -3.3745 -0.0993 47 1 8.7336 -0.1411 2.5724 48 1 9.7308 1.3364 2.5516 49 1 6.2721 2.1771 -1.3472 50 1 6.1592 0.4581 -0.8551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717181096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:26 Heat of formation + Delta-G solvation = -115.149852 kcal Electronic energy + Delta-G solvation = -30325.352666 eV Core-core repulsion = 26159.282703 eV Total energy + Delta-G solvation = -4166.069963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.19044 -40.94855 -39.54375 -37.53177 -36.84333 -35.99928 -35.65881 -34.02318 -32.81886 -31.96770 -29.55845 -28.78437 -27.92883 -26.87219 -24.77618 -24.43165 -23.30884 -22.75616 -22.28204 -20.66716 -20.04444 -19.77370 -18.69534 -17.92971 -17.67976 -17.36973 -17.03580 -16.70710 -16.37623 -16.21984 -16.12177 -15.84268 -15.54654 -15.28315 -14.89679 -14.79412 -14.78237 -14.62445 -14.39970 -14.15109 -13.99160 -13.80020 -13.69167 -13.11542 -12.97355 -12.85366 -12.78395 -12.62911 -12.60445 -12.48131 -12.30750 -12.23203 -12.03607 -11.83783 -11.70003 -11.60100 -11.26634 -11.15799 -10.98914 -10.76089 -9.80988 -9.64946 -9.30895 -8.02904 -5.36074 1.37354 1.38269 1.41311 1.44666 1.48184 1.63561 1.98279 2.48418 2.72622 3.00969 3.21627 3.28780 3.42025 3.49491 3.77511 3.86493 3.89325 3.95928 3.98541 4.00637 4.06060 4.12101 4.26986 4.30102 4.32427 4.44588 4.48003 4.52039 4.58313 4.61200 4.67618 4.73340 4.77259 4.82000 4.89129 4.91423 4.94709 5.07934 5.11893 5.13770 5.24582 5.29368 5.51678 5.73971 5.99612 6.18738 6.22291 6.24705 6.95605 7.02935 7.07105 7.82815 8.02404 9.18324 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018481 B = 0.002296 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.743356 B =12190.630886 C =12459.041621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.122 3.878 4 N -0.615 5.615 5 C 0.118 3.882 6 C -0.110 4.110 7 H 0.158 0.842 8 C 0.529 3.471 9 O -0.569 6.569 10 N -0.608 5.608 11 C 0.068 3.932 12 C 0.032 3.968 13 O -0.388 6.388 14 C 0.083 3.917 15 H 0.056 0.944 16 C 0.161 3.839 17 N -0.753 5.753 18 C -0.235 4.235 19 H 0.060 0.940 20 C -0.065 4.065 21 N -0.982 5.982 22 Si 0.958 3.042 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.257 1.257 26 C 0.095 3.905 27 C -0.143 4.143 28 C 0.513 3.487 29 O -0.573 6.573 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.367 0.633 46 H 0.258 0.742 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.140 0.860 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.796 17.233 -0.525 35.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.001 3.999 4 N -0.347 5.347 5 C -0.005 4.005 6 C -0.131 4.131 7 H 0.175 0.825 8 C 0.317 3.683 9 O -0.448 6.448 10 N -0.341 5.341 11 C -0.054 4.054 12 C -0.045 4.045 13 O -0.307 6.307 14 C 0.024 3.976 15 H 0.074 0.926 16 C 0.035 3.965 17 N -0.399 5.399 18 C -0.366 4.366 19 H 0.078 0.922 20 C -0.256 4.256 21 N -0.633 5.633 22 Si 0.785 3.215 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.181 1.181 26 C -0.029 4.029 27 C -0.183 4.183 28 C 0.301 3.699 29 O -0.453 6.453 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.200 0.800 46 H 0.067 0.933 47 H 0.113 0.887 48 H 0.107 0.893 49 H 0.158 0.842 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -30.946 16.833 -0.478 35.231 hybrid contribution 0.307 -0.799 -0.925 1.260 sum -30.640 16.034 -1.404 34.610 Atomic orbital electron populations 1.21668 0.93530 1.02445 1.02709 1.21883 0.97565 0.96966 1.01504 1.21626 0.76803 0.97220 1.04248 1.48491 1.07060 1.72078 1.07089 1.22069 0.87783 1.03871 0.86789 1.22241 0.92940 1.03941 0.93967 0.82476 1.20558 0.83068 0.81508 0.83120 1.90727 1.81948 1.38513 1.33620 1.48159 1.05161 1.44188 1.36610 1.22887 1.01221 0.92477 0.88815 1.23302 0.89280 0.98284 0.93615 1.88103 1.33824 1.56101 1.52684 1.22516 0.94545 0.90123 0.90376 0.92634 1.20775 0.89019 0.95159 0.91595 1.42545 1.22423 1.69199 1.05734 1.19053 0.96226 1.27387 0.93886 0.92238 1.25504 0.96774 1.00698 1.02630 1.69879 1.14001 1.44419 1.34975 0.85362 0.78526 0.77022 0.80541 1.20347 1.22178 1.18146 1.22086 0.88415 0.98062 0.94301 1.22530 0.94210 1.06047 0.95531 1.21148 0.90022 0.74565 0.84135 1.90726 1.79338 1.52480 1.22788 0.92476 0.92363 0.90935 0.94166 0.91612 0.87292 0.90717 0.90743 0.86855 0.88494 0.85266 0.85293 0.92633 0.93539 0.94623 0.79963 0.93308 0.88717 0.89284 0.84205 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.14 -1.80 6.26 30.59 0.19 -1.61 16 3 C 0.12 1.39 5.93 86.38 0.51 1.90 16 4 N -0.61 -8.36 2.93 -817.86 -2.40 -10.76 16 5 C 0.12 1.25 6.69 86.82 0.58 1.83 16 6 C -0.11 -1.01 2.56 -10.48 -0.03 -1.04 16 7 H 0.16 0.38 8.02 -2.38 -0.02 0.36 16 8 C 0.53 9.03 7.01 87.66 0.61 9.64 16 9 O -0.57 -14.33 15.00 -3.02 -0.05 -14.38 16 10 N -0.61 -10.30 3.02 -817.26 -2.47 -12.77 16 11 C 0.07 0.73 6.26 86.36 0.54 1.27 16 12 C 0.03 0.53 6.99 72.08 0.50 1.04 16 13 O -0.39 -10.89 10.14 -148.98 -1.51 -12.40 16 14 C 0.08 2.39 2.86 30.70 0.09 2.48 16 15 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 16 C 0.16 6.06 5.96 86.38 0.51 6.57 16 17 N -0.75 -36.08 5.30 -343.44 -1.82 -37.90 16 18 C -0.23 -13.65 10.47 84.04 0.88 -12.77 16 19 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 20 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 21 N -0.98 -63.72 13.97 21.65 0.30 -63.42 16 22 Si 0.96 46.66 27.74 68.60 1.90 48.57 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.26 -11.42 6.51 99.48 0.65 -10.77 16 26 C 0.09 2.15 5.93 86.36 0.51 2.67 16 27 C -0.14 -1.59 5.30 30.59 0.16 -1.43 16 28 C 0.51 9.20 8.02 87.90 0.71 9.91 16 29 O -0.57 -15.38 17.59 -3.03 -0.05 -15.43 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 1.01 7.93 -2.38 -0.02 0.99 16 37 H 0.07 1.13 7.01 -2.39 -0.02 1.12 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.13 0.52 4.03 -2.39 -0.01 0.51 16 41 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.37 17.11 5.41 -92.71 -0.50 16.61 16 46 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 47 H 0.09 2.36 7.08 -2.39 -0.02 2.34 16 48 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.14 0.81 6.50 -2.39 -0.02 0.79 16 50 H 0.10 1.39 7.89 -2.39 -0.02 1.37 16 Total: -1.00 -83.19 396.29 1.25 -81.94 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.38 Total: 20.14 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 6.96 Total: 16.42 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -6.38 Total: -124.85 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.61 Total: -42.21 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.90 Total: 48.57 kcal Total: -83.19 1.25 -81.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717181096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.211 kcal (2) G-P(sol) polarization free energy of solvation -83.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds