Wall clock time and date at job start Tue Mar 31 2020 23:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46779 * 2 1 4 4 C 1.50707 * 109.47000 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99677 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00036 * 180.02562 * 4 3 2 7 7 C 1.47084 * 125.63003 * 359.97435 * 6 4 3 8 8 C 1.54462 * 107.29260 * 179.02435 * 7 6 4 9 9 C 1.54391 * 102.87579 * 338.48337 * 8 7 6 10 10 C 1.47568 * 125.63051 * 179.97438 * 6 4 3 11 11 C 1.52175 * 110.44653 * 152.54826 * 9 8 7 12 12 N 1.47186 * 109.33907 * 68.89074 * 11 9 8 13 13 C 1.46899 * 111.00181 * 180.81506 * 12 11 9 14 14 C 1.50693 * 109.47502 * 170.14520 * 13 12 11 15 15 O 1.21299 * 119.99769 * 353.72446 * 14 13 12 16 16 N 1.34777 * 120.00589 * 173.72122 * 14 13 12 17 17 C 1.37087 * 120.00342 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00067 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00212 * 179.97438 * 17 16 14 20 20 N 1.31419 * 119.99855 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46878 * 180.02562 * 21 19 17 23 23 H 1.48496 * 109.46920 * 300.00110 * 21 19 17 24 24 H 1.48492 * 109.46983 * 60.00839 * 21 19 17 25 25 C 1.47014 * 110.63512 * 57.12347 * 12 11 9 26 26 C 1.53102 * 109.43029 * 300.72269 * 25 12 11 27 27 O 1.41964 * 110.63174 * 276.45838 * 9 8 7 28 28 H 1.09004 * 109.47164 * 59.99692 * 1 2 3 29 29 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47073 * 299.99282 * 1 2 3 31 31 H 1.09004 * 109.46839 * 240.00789 * 2 1 3 32 32 H 1.08995 * 109.47667 * 120.00552 * 2 1 3 33 33 H 1.09004 * 109.46791 * 60.00759 * 3 2 1 34 34 H 1.08991 * 109.47758 * 299.99976 * 3 2 1 35 35 H 1.08995 * 109.87891 * 59.60223 * 7 6 4 36 36 H 1.08996 * 109.88052 * 298.44760 * 7 6 4 37 37 H 1.09001 * 110.73437 * 220.13426 * 8 7 6 38 38 H 1.08996 * 110.72961 * 96.82840 * 8 7 6 39 39 H 1.09001 * 110.37978 * 84.48431 * 10 6 4 40 40 H 1.09003 * 110.37438 * 322.14270 * 10 6 4 41 41 H 1.09004 * 109.49566 * 308.93267 * 11 9 8 42 42 H 1.08995 * 109.49438 * 188.84923 * 11 9 8 43 43 H 1.08996 * 109.46709 * 50.14308 * 13 12 11 44 44 H 1.09007 * 109.47106 * 290.14600 * 13 12 11 45 45 H 0.96998 * 119.99246 * 0.02562 * 16 14 13 46 46 H 0.97000 * 119.99986 * 359.97438 * 20 19 17 47 47 H 1.08992 * 109.48234 * 60.71239 * 25 12 11 48 48 H 1.08999 * 109.47743 * 180.74091 * 25 12 11 49 49 H 1.09004 * 109.52179 * 177.43818 * 26 25 12 50 50 H 1.08997 * 109.52610 * 297.62754 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0013 7 6 3.6139 3.9495 0.0009 8 6 4.7676 4.9763 0.0270 9 6 5.9463 4.1550 0.5925 10 6 5.6894 2.7546 0.0025 11 6 7.2710 4.7131 0.0932 12 7 7.5057 6.0315 0.7039 13 6 8.7688 6.6135 0.2309 14 6 8.8600 8.0490 0.6802 15 8 7.9148 8.5732 1.2309 16 7 9.9915 8.7504 0.4702 17 6 10.0741 10.0565 0.8785 18 1 9.2326 10.5233 1.3688 19 6 11.2409 10.7794 0.6625 20 7 12.2651 10.2113 0.0664 21 14 11.3537 12.5589 1.2195 22 1 12.6922 13.1017 0.8742 23 1 10.3047 13.3585 0.5374 24 1 11.1540 12.6312 2.6892 25 6 7.4875 5.9336 2.1707 26 6 6.1300 5.3931 2.6282 27 8 5.8979 4.1218 2.0109 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 2.9878 4.0730 0.8845 36 1 3.0169 4.0857 -0.9008 37 1 4.5270 5.8104 0.6862 38 1 4.9917 5.3304 -0.9792 39 1 6.0776 2.6942 -1.0143 40 1 6.1457 1.9889 0.6299 41 1 7.2368 4.8156 -0.9915 42 1 8.0786 4.0352 0.3695 43 1 8.8034 6.5706 -0.8577 44 1 9.6057 6.0498 0.6435 45 1 10.7471 8.3313 0.0295 46 1 12.2066 9.2872 -0.2225 47 1 8.2772 5.2584 2.4998 48 1 7.6498 6.9210 2.6029 49 1 6.1307 5.2770 3.7120 50 1 5.3436 6.0889 2.3360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717571964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:28 Heat of formation + Delta-G solvation = -106.853242 kcal Electronic energy + Delta-G solvation = -30248.222849 eV Core-core repulsion = 26082.512654 eV Total energy + Delta-G solvation = -4165.710195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.95856 -39.56482 -38.41389 -36.75965 -35.39756 -34.67799 -34.19990 -32.19099 -31.18365 -30.18171 -29.15976 -28.62076 -26.71171 -24.99513 -23.89550 -23.45218 -22.44550 -21.71330 -19.81478 -19.64663 -19.09627 -17.95390 -17.49890 -17.05671 -16.38920 -16.19268 -16.08001 -15.43760 -15.41090 -15.03192 -14.76928 -14.72801 -14.27130 -13.88446 -13.77543 -13.68268 -13.57178 -13.42741 -13.07704 -12.94042 -12.87492 -12.52100 -12.26046 -12.06044 -11.91354 -11.69162 -11.52426 -11.47802 -11.27338 -11.26017 -11.18927 -11.06475 -10.92574 -10.46040 -10.24124 -10.06386 -9.90817 -9.69695 -9.55808 -8.88984 -8.57698 -8.13038 -8.05408 -6.79897 -3.93541 2.42744 2.68927 3.27048 3.31656 3.46601 3.51669 3.67324 3.78123 4.18823 4.25579 4.29487 4.54262 4.55221 4.60558 4.65729 4.80240 4.90633 4.96290 5.04875 5.11494 5.14289 5.18022 5.23037 5.26446 5.29826 5.34922 5.38526 5.40248 5.44612 5.52831 5.58357 5.61473 5.69305 5.71443 5.72900 5.81606 5.89772 5.94291 5.94608 6.01499 6.06931 6.14805 6.97412 7.03336 7.16151 7.26597 7.75218 7.94038 8.02994 8.54825 8.74677 9.42211 9.82203 10.63308 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036003 B = 0.001945 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.516953 B =14391.381557 C =14567.539421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.528 3.472 5 O -0.544 6.544 6 N -0.616 5.616 7 C 0.103 3.897 8 C -0.145 4.145 9 C 0.112 3.888 10 C 0.122 3.878 11 C 0.035 3.965 12 N -0.507 5.507 13 C 0.046 3.954 14 C 0.445 3.555 15 O -0.571 6.571 16 N -0.575 5.575 17 C -0.383 4.383 18 H 0.099 0.901 19 C -0.009 4.009 20 N -0.900 5.900 21 Si 1.091 2.909 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.016 3.984 26 C 0.066 3.934 27 O -0.367 6.367 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.375 0.625 46 H 0.261 0.739 47 H 0.034 0.966 48 H 0.109 0.891 49 H 0.098 0.902 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 -15.920 -1.339 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.175 4.175 4 C 0.318 3.682 5 O -0.421 6.421 6 N -0.350 5.350 7 C -0.020 4.020 8 C -0.183 4.183 9 C 0.071 3.929 10 C -0.001 4.001 11 C -0.094 4.094 12 N -0.232 5.232 13 C -0.086 4.086 14 C 0.231 3.769 15 O -0.455 6.455 16 N -0.213 5.213 17 C -0.512 4.512 18 H 0.117 0.883 19 C -0.211 4.211 20 N -0.539 5.539 21 Si 0.917 3.083 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.112 4.112 26 C -0.011 4.011 27 O -0.286 6.286 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.208 0.792 46 H 0.072 0.928 47 H 0.052 0.948 48 H 0.127 0.873 49 H 0.116 0.884 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.469 -14.700 -0.946 22.851 hybrid contribution 0.265 -1.727 -0.249 1.764 sum -17.204 -16.427 -1.194 23.817 Atomic orbital electron populations 1.21792 0.95419 1.01972 1.01812 1.21292 0.95281 0.94646 1.03561 1.21699 0.91327 1.00133 1.04353 1.20442 0.90144 0.81972 0.75675 1.90704 1.70559 1.30564 1.50274 1.48517 1.07041 1.06031 1.73417 1.22115 0.96643 0.81528 1.01683 1.23062 0.93905 0.97878 1.03455 1.21808 0.94207 0.94407 0.82507 1.22017 0.81313 0.95895 1.00840 1.22504 0.96019 0.90497 1.00336 1.61882 1.34075 1.20410 1.06805 1.21884 0.90270 0.95401 1.01011 1.19597 0.84215 0.87377 0.85736 1.90503 1.37450 1.70966 1.46573 1.41948 1.13293 1.12570 1.53474 1.20518 1.03728 0.87523 1.39411 0.88291 1.26516 0.91171 1.07107 0.96347 1.70909 1.31289 1.14339 1.37330 0.83132 0.76396 0.72449 0.76320 1.20401 1.20989 1.21017 1.22892 0.96867 1.03244 0.88188 1.22762 0.96324 0.84588 0.97388 1.87848 1.92104 1.31430 1.17221 0.92679 0.92387 0.92643 0.91269 0.91231 0.88917 0.88983 0.91167 0.91175 0.88592 0.89257 0.89792 0.89395 0.89311 0.93835 0.89131 0.93452 0.79188 0.92765 0.94779 0.87274 0.88378 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.11 -0.86 5.22 -26.73 -0.14 -1.00 16 3 C -0.14 -1.03 4.89 -27.88 -0.14 -1.17 16 4 C 0.53 6.04 7.85 -10.98 -0.09 5.95 16 5 O -0.54 -8.23 16.25 5.56 0.09 -8.14 16 6 N -0.62 -6.51 3.33 -170.77 -0.57 -7.07 16 7 C 0.10 0.87 6.50 -2.96 -0.02 0.85 16 8 C -0.15 -1.45 5.82 -25.24 -0.15 -1.59 16 9 C 0.11 1.28 0.84 -89.73 -0.07 1.20 16 10 C 0.12 1.35 6.08 -2.87 -0.02 1.33 16 11 C 0.04 0.43 4.29 -4.09 -0.02 0.41 16 12 N -0.51 -7.77 4.29 -236.20 -1.01 -8.78 16 13 C 0.05 0.76 5.45 -4.98 -0.03 0.74 16 14 C 0.45 10.01 7.35 -10.99 -0.08 9.93 16 15 O -0.57 -14.69 14.26 5.54 0.08 -14.61 16 16 N -0.57 -13.98 5.28 -10.97 -0.06 -14.04 16 17 C -0.38 -10.47 9.68 -14.94 -0.14 -10.61 16 18 H 0.10 2.86 7.16 -52.48 -0.38 2.49 16 19 C -0.01 -0.23 5.50 -17.47 -0.10 -0.33 16 20 N -0.90 -24.76 13.68 55.50 0.76 -24.00 16 21 Si 1.09 23.77 29.92 -169.99 -5.09 18.69 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 C 0.02 0.24 5.28 -3.71 -0.02 0.23 16 26 C 0.07 0.85 6.79 37.21 0.25 1.10 16 27 O -0.37 -4.83 10.34 -35.23 -0.36 -5.20 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.07 0.63 8.10 -51.93 -0.42 0.20 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 1.05 6.30 -51.93 -0.33 0.73 16 38 H 0.09 0.85 7.90 -51.93 -0.41 0.44 16 39 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 40 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 41 H 0.09 0.94 7.98 -51.93 -0.41 0.52 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 44 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.38 8.46 6.73 -40.82 -0.27 8.19 16 46 H 0.26 6.90 6.78 -40.82 -0.28 6.62 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.11 2.01 6.09 -51.93 -0.32 1.69 16 49 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.07 0.84 6.48 -51.93 -0.34 0.51 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -33.77 395.38 -8.86 -42.63 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.27 Total: 8.05 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.39 Total: 6.53 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.88 Total: -53.90 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.19 Total: -27.95 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.09 Total: 18.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.77 -8.86 -42.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717571964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.225 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds