Wall clock time and date at job start Tue Mar 31 2020 23:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46779 * 2 1 4 4 C 1.50707 * 109.47000 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99677 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00036 * 180.02562 * 4 3 2 7 7 C 1.47084 * 125.63003 * 359.97435 * 6 4 3 8 8 C 1.54462 * 107.29260 * 179.02435 * 7 6 4 9 9 C 1.54391 * 102.87579 * 338.48337 * 8 7 6 10 10 C 1.47568 * 125.63051 * 179.97438 * 6 4 3 11 11 C 1.52175 * 110.44653 * 152.54826 * 9 8 7 12 12 N 1.47186 * 109.33907 * 68.89074 * 11 9 8 13 13 C 1.46899 * 111.00181 * 180.81506 * 12 11 9 14 14 C 1.50693 * 109.47502 * 170.14520 * 13 12 11 15 15 O 1.21299 * 119.99769 * 353.72446 * 14 13 12 16 16 N 1.34777 * 120.00589 * 173.72122 * 14 13 12 17 17 C 1.37087 * 120.00342 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00067 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00212 * 179.97438 * 17 16 14 20 20 N 1.31419 * 119.99855 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46878 * 180.02562 * 21 19 17 23 23 H 1.48496 * 109.46920 * 300.00110 * 21 19 17 24 24 H 1.48492 * 109.46983 * 60.00839 * 21 19 17 25 25 C 1.47014 * 110.63512 * 57.12347 * 12 11 9 26 26 C 1.53102 * 109.43029 * 300.72269 * 25 12 11 27 27 O 1.41964 * 110.63174 * 276.45838 * 9 8 7 28 28 H 1.09004 * 109.47164 * 59.99692 * 1 2 3 29 29 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47073 * 299.99282 * 1 2 3 31 31 H 1.09004 * 109.46839 * 240.00789 * 2 1 3 32 32 H 1.08995 * 109.47667 * 120.00552 * 2 1 3 33 33 H 1.09004 * 109.46791 * 60.00759 * 3 2 1 34 34 H 1.08991 * 109.47758 * 299.99976 * 3 2 1 35 35 H 1.08995 * 109.87891 * 59.60223 * 7 6 4 36 36 H 1.08996 * 109.88052 * 298.44760 * 7 6 4 37 37 H 1.09001 * 110.73437 * 220.13426 * 8 7 6 38 38 H 1.08996 * 110.72961 * 96.82840 * 8 7 6 39 39 H 1.09001 * 110.37978 * 84.48431 * 10 6 4 40 40 H 1.09003 * 110.37438 * 322.14270 * 10 6 4 41 41 H 1.09004 * 109.49566 * 308.93267 * 11 9 8 42 42 H 1.08995 * 109.49438 * 188.84923 * 11 9 8 43 43 H 1.08996 * 109.46709 * 50.14308 * 13 12 11 44 44 H 1.09007 * 109.47106 * 290.14600 * 13 12 11 45 45 H 0.96998 * 119.99246 * 0.02562 * 16 14 13 46 46 H 0.97000 * 119.99986 * 359.97438 * 20 19 17 47 47 H 1.08992 * 109.48234 * 60.71239 * 25 12 11 48 48 H 1.08999 * 109.47743 * 180.74091 * 25 12 11 49 49 H 1.09004 * 109.52179 * 177.43818 * 26 25 12 50 50 H 1.08997 * 109.52610 * 297.62754 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0013 7 6 3.6139 3.9495 0.0009 8 6 4.7676 4.9763 0.0270 9 6 5.9463 4.1550 0.5925 10 6 5.6894 2.7546 0.0025 11 6 7.2710 4.7131 0.0932 12 7 7.5057 6.0315 0.7039 13 6 8.7688 6.6135 0.2309 14 6 8.8600 8.0490 0.6802 15 8 7.9148 8.5732 1.2309 16 7 9.9915 8.7504 0.4702 17 6 10.0741 10.0565 0.8785 18 1 9.2326 10.5233 1.3688 19 6 11.2409 10.7794 0.6625 20 7 12.2651 10.2113 0.0664 21 14 11.3537 12.5589 1.2195 22 1 12.6922 13.1017 0.8742 23 1 10.3047 13.3585 0.5374 24 1 11.1540 12.6312 2.6892 25 6 7.4875 5.9336 2.1707 26 6 6.1300 5.3931 2.6282 27 8 5.8979 4.1218 2.0109 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 2.9878 4.0730 0.8845 36 1 3.0169 4.0857 -0.9008 37 1 4.5270 5.8104 0.6862 38 1 4.9917 5.3304 -0.9792 39 1 6.0776 2.6942 -1.0143 40 1 6.1457 1.9889 0.6299 41 1 7.2368 4.8156 -0.9915 42 1 8.0786 4.0352 0.3695 43 1 8.8034 6.5706 -0.8577 44 1 9.6057 6.0498 0.6435 45 1 10.7471 8.3313 0.0295 46 1 12.2066 9.2872 -0.2225 47 1 8.2772 5.2584 2.4998 48 1 7.6498 6.9210 2.6029 49 1 6.1307 5.2770 3.7120 50 1 5.3436 6.0889 2.3360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717571964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:27 Heat of formation + Delta-G solvation = -131.551363 kcal Electronic energy + Delta-G solvation = -30249.293840 eV Core-core repulsion = 26082.512654 eV Total energy + Delta-G solvation = -4166.781186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.90484 -40.66585 -39.99848 -37.80168 -36.70241 -36.03593 -35.30849 -33.14897 -33.12445 -31.07455 -30.31617 -29.44418 -27.76981 -26.49425 -25.32752 -24.27822 -23.48656 -22.43081 -21.37635 -20.71903 -20.00302 -19.91127 -18.39929 -18.29824 -17.50125 -17.40975 -17.02944 -16.62255 -16.56702 -16.25293 -15.94173 -15.75034 -15.54788 -15.37093 -15.24296 -14.74821 -14.53940 -14.31980 -14.08944 -13.82720 -13.80589 -13.68422 -13.33622 -13.15293 -12.90749 -12.87187 -12.68166 -12.61858 -12.36698 -12.25031 -12.16352 -12.00086 -11.92186 -11.87521 -11.62975 -11.54655 -11.41584 -10.97019 -10.76502 -10.28893 -10.08705 -9.71342 -9.39215 -8.91175 -6.05283 1.53078 1.55208 1.58984 1.82665 1.89920 2.01388 2.35137 2.51391 2.57405 3.16163 3.18433 3.39893 3.50188 3.67673 3.79047 3.90035 3.98660 4.00614 4.08349 4.12311 4.19819 4.25604 4.33281 4.35337 4.38803 4.47742 4.51821 4.53635 4.57720 4.65101 4.69557 4.72103 4.78717 4.81727 4.88193 4.89941 5.03570 5.12785 5.22708 5.22978 5.27181 5.46260 5.57397 5.77282 5.91621 5.97413 6.15235 6.46437 6.58532 6.76093 7.10277 7.45640 7.93985 8.56370 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036003 B = 0.001945 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.516953 B =14391.381557 C =14567.539421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.128 4.128 4 C 0.520 3.480 5 O -0.591 6.591 6 N -0.617 5.617 7 C 0.106 3.894 8 C -0.142 4.142 9 C 0.109 3.891 10 C 0.123 3.877 11 C 0.037 3.963 12 N -0.518 5.518 13 C 0.057 3.943 14 C 0.447 3.553 15 O -0.605 6.605 16 N -0.588 5.588 17 C -0.407 4.407 18 H 0.075 0.925 19 C -0.043 4.043 20 N -0.918 5.918 21 Si 1.133 2.867 22 H -0.275 1.275 23 H -0.272 1.272 24 H -0.273 1.273 25 C 0.019 3.981 26 C 0.074 3.926 27 O -0.377 6.377 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.047 0.953 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.383 0.617 46 H 0.259 0.741 47 H 0.035 0.965 48 H 0.074 0.926 49 H 0.113 0.887 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.266 -16.085 -2.208 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.167 4.167 4 C 0.311 3.689 5 O -0.472 6.472 6 N -0.350 5.350 7 C -0.016 4.016 8 C -0.180 4.180 9 C 0.068 3.932 10 C 0.000 4.000 11 C -0.091 4.091 12 N -0.243 5.243 13 C -0.074 4.074 14 C 0.235 3.765 15 O -0.490 6.490 16 N -0.228 5.228 17 C -0.536 4.536 18 H 0.093 0.907 19 C -0.241 4.241 20 N -0.558 5.558 21 Si 0.953 3.047 22 H -0.200 1.200 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.110 4.110 26 C -0.002 4.002 27 O -0.296 6.296 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.128 0.872 42 H 0.065 0.935 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.217 0.783 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.092 0.908 49 H 0.131 0.869 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.062 -14.877 -1.825 24.249 hybrid contribution 0.712 -1.753 0.032 1.892 sum -18.351 -16.630 -1.793 24.830 Atomic orbital electron populations 1.21753 0.93498 1.02426 1.02761 1.21267 0.96847 0.94673 1.01981 1.21748 0.88351 1.00292 1.06300 1.21165 0.91634 0.81381 0.74676 1.90682 1.71729 1.32219 1.52532 1.48633 1.06901 1.06774 1.72684 1.22239 0.96159 0.79675 1.03556 1.23034 0.93762 0.97708 1.03469 1.21899 0.94557 0.94982 0.81730 1.21988 0.81989 0.94813 1.01228 1.22605 0.96486 0.88657 1.01350 1.61848 1.33157 1.22498 1.06785 1.21773 0.91793 0.91376 1.02489 1.20648 0.82837 0.89351 0.83703 1.90483 1.38529 1.72455 1.47547 1.42005 1.14354 1.12064 1.54348 1.20500 1.03457 0.89214 1.40457 0.90707 1.27779 0.90485 1.10188 0.95643 1.70978 1.31806 1.14568 1.38423 0.82635 0.76766 0.68663 0.76667 1.19962 1.19769 1.19875 1.22786 0.98464 1.01289 0.88423 1.22697 0.94742 0.84514 0.98240 1.87846 1.92045 1.31347 1.18374 0.91507 0.92288 0.91831 0.92677 0.93146 0.87183 0.86438 0.90257 0.88377 0.89626 0.88389 0.88191 0.91495 0.87152 0.93526 0.86476 0.91812 0.78292 0.93031 0.94709 0.90810 0.86899 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.11 -1.59 5.22 30.60 0.16 -1.43 16 3 C -0.13 -1.64 4.89 29.85 0.15 -1.50 16 4 C 0.52 11.22 7.85 87.66 0.69 11.91 16 5 O -0.59 -17.99 16.25 -3.03 -0.05 -18.03 16 6 N -0.62 -11.78 3.33 -812.57 -2.71 -14.49 16 7 C 0.11 1.44 6.50 86.76 0.56 2.01 16 8 C -0.14 -2.47 5.82 31.56 0.18 -2.29 16 9 C 0.11 2.29 0.84 -10.22 -0.01 2.28 16 10 C 0.12 2.52 6.08 86.55 0.53 3.05 16 11 C 0.04 0.81 4.29 85.98 0.37 1.18 16 12 N -0.52 -15.17 4.29 -901.19 -3.86 -19.03 16 13 C 0.06 1.82 5.45 85.56 0.47 2.28 16 14 C 0.45 20.15 7.35 87.65 0.64 20.80 16 15 O -0.61 -31.67 14.26 -3.09 -0.04 -31.71 16 16 N -0.59 -28.92 5.28 -306.99 -1.62 -30.54 16 17 C -0.41 -22.67 9.68 84.04 0.81 -21.85 16 18 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 19 C -0.04 -2.28 5.50 84.92 0.47 -1.82 16 20 N -0.92 -50.57 13.68 21.66 0.30 -50.27 16 21 Si 1.13 47.67 29.92 68.60 2.05 49.72 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 C 0.02 0.57 5.28 86.32 0.46 1.02 16 26 C 0.07 1.86 6.79 72.02 0.49 2.35 16 27 O -0.38 -9.44 10.34 -148.97 -1.54 -10.98 16 28 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.09 1.72 6.30 -2.39 -0.02 1.70 16 38 H 0.10 1.55 7.90 -2.39 -0.02 1.53 16 39 H 0.10 1.72 8.00 -2.39 -0.02 1.70 16 40 H 0.07 1.66 8.06 -2.39 -0.02 1.65 16 41 H 0.11 1.96 7.98 -2.38 -0.02 1.94 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.12 3.17 8.06 -2.39 -0.02 3.15 16 44 H 0.06 1.87 8.12 -2.38 -0.02 1.85 16 45 H 0.38 17.38 6.73 -92.71 -0.62 16.76 16 46 H 0.26 13.76 6.78 -92.71 -0.63 13.14 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.07 2.79 6.09 -2.39 -0.01 2.77 16 49 H 0.11 2.43 8.14 -2.39 -0.02 2.42 16 50 H 0.06 1.62 6.48 -2.39 -0.02 1.60 16 Total: -1.00 -74.98 395.38 -0.35 -75.33 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.45 Total: 32.68 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 6.68 Total: 17.34 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -7.90 Total: -114.34 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -1.63 Total: -60.73 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.05 Total: 49.72 kcal Total: -74.98 -0.35 -75.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717571964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.222 kcal (2) G-P(sol) polarization free energy of solvation -74.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds