Wall clock time and date at job start Tue Mar 31 2020 23:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46872 * 2 1 4 4 C 1.50699 * 109.46792 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00300 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99521 * 180.02562 * 4 3 2 7 7 C 1.47484 * 125.66645 * 359.97354 * 6 4 3 8 8 C 1.55020 * 104.91145 * 155.98619 * 7 6 4 9 9 C 1.54539 * 101.48763 * 36.40223 * 8 7 6 10 10 C 1.47182 * 125.65941 * 180.02562 * 6 4 3 11 11 C 1.52335 * 110.10437 * 206.75719 * 9 8 7 12 12 N 1.47149 * 109.30732 * 292.50191 * 11 9 8 13 13 C 1.46894 * 111.00452 * 178.89171 * 12 11 9 14 14 C 1.50697 * 109.47348 * 293.65129 * 13 12 11 15 15 O 1.21296 * 120.00025 * 353.71462 * 14 13 12 16 16 N 1.34778 * 120.00165 * 173.72116 * 14 13 12 17 17 C 1.37097 * 119.99960 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99716 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99837 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99617 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47549 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47105 * 120.00172 * 21 19 17 24 24 H 1.48499 * 109.46996 * 239.99896 * 21 19 17 25 25 C 1.47023 * 110.67747 * 302.61851 * 12 11 9 26 26 C 1.53106 * 109.37802 * 59.15631 * 25 12 11 27 27 O 1.42139 * 110.26298 * 83.81423 * 9 8 7 28 28 H 1.09001 * 109.46973 * 60.00345 * 1 2 3 29 29 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47445 * 300.00184 * 1 2 3 31 31 H 1.08998 * 109.47377 * 240.00578 * 2 1 3 32 32 H 1.09001 * 109.46973 * 119.99655 * 2 1 3 33 33 H 1.08998 * 109.46648 * 60.00131 * 3 2 1 34 34 H 1.08995 * 109.47154 * 300.00298 * 3 2 1 35 35 H 1.09004 * 110.34522 * 37.13411 * 7 6 4 36 36 H 1.08998 * 110.44783 * 274.90100 * 7 6 4 37 37 H 1.08994 * 111.02117 * 278.35385 * 8 7 6 38 38 H 1.08996 * 111.05222 * 154.46620 * 8 7 6 39 39 H 1.08992 * 109.91603 * 62.10614 * 10 6 4 40 40 H 1.08999 * 109.91132 * 300.83005 * 10 6 4 41 41 H 1.08993 * 109.50140 * 172.55210 * 11 9 8 42 42 H 1.09006 * 109.52655 * 52.46399 * 11 9 8 43 43 H 1.09001 * 109.47336 * 173.64388 * 13 12 11 44 44 H 1.09002 * 109.46839 * 53.65302 * 13 12 11 45 45 H 0.97000 * 119.99897 * 359.97438 * 16 14 13 46 46 H 0.97003 * 119.99637 * 180.02562 * 20 19 17 47 47 H 1.09007 * 109.49074 * 179.12457 * 25 12 11 48 48 H 1.08998 * 109.48630 * 299.18504 * 25 12 11 49 49 H 1.08997 * 109.51850 * 182.66220 * 26 25 12 50 50 H 1.09002 * 109.55998 * 62.51669 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0013 7 6 3.6130 3.9536 0.0009 8 6 4.6948 4.8809 0.6114 9 6 5.9899 4.2607 0.0402 10 6 5.6854 2.7551 0.0014 11 6 7.1623 4.5480 0.9695 12 7 7.4514 5.9907 0.9563 13 6 8.5616 6.3136 1.8623 14 6 8.1410 6.0519 3.2855 15 8 6.9932 5.7471 3.5324 16 7 9.0401 6.1566 4.2841 17 6 8.6572 5.9190 5.5789 18 1 7.6351 5.6484 5.7987 19 6 9.5843 6.0265 6.6083 20 7 10.8282 6.3553 6.3407 21 14 9.0628 5.7021 8.3725 22 1 7.6205 5.3501 8.4056 23 1 9.8592 4.5770 8.9252 24 1 9.2944 6.9205 9.1891 25 6 7.7361 6.4506 -0.4108 26 6 6.5285 6.1608 -1.3062 27 8 6.2393 4.7592 -1.2674 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 2.7139 3.9631 0.6171 36 1 3.3774 4.2647 -1.0169 37 1 4.6842 4.8301 1.7001 38 1 4.5690 5.9079 0.2687 39 1 6.1022 2.3151 -0.9045 40 1 6.1066 2.2686 0.8812 41 1 8.0396 3.9981 0.6292 42 1 6.9085 4.2371 1.9830 43 1 8.8288 7.3643 1.7497 44 1 9.4227 5.6917 1.6177 45 1 9.9581 6.4001 4.0866 46 1 11.4754 6.4299 7.0594 47 1 7.9320 7.5229 -0.4005 48 1 8.6095 5.9249 -0.7968 49 1 6.7548 6.4576 -2.3303 50 1 5.6651 6.7208 -0.9470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717571965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:31 Heat of formation + Delta-G solvation = -107.363959 kcal Electronic energy + Delta-G solvation = -30643.712546 eV Core-core repulsion = 26477.980205 eV Total energy + Delta-G solvation = -4165.732342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.82758 -39.45187 -38.21973 -36.66581 -35.26039 -34.55581 -33.85522 -32.04595 -31.27872 -30.03020 -29.16058 -28.48027 -26.53965 -25.25904 -23.97564 -23.26852 -22.31902 -21.53673 -19.60670 -19.25029 -19.08714 -17.91464 -17.30965 -16.83664 -16.33083 -16.05950 -15.85194 -15.42853 -15.11705 -14.96532 -14.70623 -14.54857 -14.14511 -13.85879 -13.83240 -13.51630 -13.35215 -13.26766 -13.00490 -12.83682 -12.61992 -12.15567 -12.12194 -11.93995 -11.84071 -11.75128 -11.54889 -11.41887 -11.36469 -11.21324 -11.08914 -10.94855 -10.90089 -10.39932 -10.37322 -10.25946 -9.91707 -9.61264 -9.52419 -8.73065 -8.51138 -8.05043 -7.97036 -6.45705 -3.86569 2.58196 2.83752 3.13586 3.24714 3.31343 3.56965 3.78224 3.85106 4.16805 4.33386 4.48321 4.65565 4.69793 4.74899 4.80743 4.92855 4.99445 5.12013 5.16282 5.19037 5.21268 5.24921 5.26783 5.36426 5.38630 5.43071 5.49311 5.55089 5.56323 5.68974 5.73155 5.75060 5.79670 5.82229 5.92855 5.93838 6.04652 6.07591 6.13673 6.17501 6.19815 6.24222 7.05778 7.11515 7.21459 7.43267 7.51624 8.01978 8.09467 8.56838 9.13984 9.49840 10.00798 10.71985 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.002804 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.851162 B = 9981.570537 C =11895.286202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.527 3.473 5 O -0.544 6.544 6 N -0.616 5.616 7 C 0.100 3.900 8 C -0.142 4.142 9 C 0.113 3.887 10 C 0.125 3.875 11 C 0.038 3.962 12 N -0.509 5.509 13 C 0.046 3.954 14 C 0.442 3.558 15 O -0.577 6.577 16 N -0.563 5.563 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.014 3.986 26 C 0.065 3.935 27 O -0.371 6.371 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.086 0.914 48 H 0.040 0.960 49 H 0.097 0.903 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 -2.371 -16.417 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.175 4.175 4 C 0.316 3.684 5 O -0.421 6.421 6 N -0.351 5.351 7 C -0.023 4.023 8 C -0.180 4.180 9 C 0.073 3.927 10 C 0.002 3.998 11 C -0.091 4.091 12 N -0.233 5.233 13 C -0.086 4.086 14 C 0.228 3.772 15 O -0.462 6.462 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.114 4.114 26 C -0.012 4.012 27 O -0.290 6.290 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.131 0.869 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.115 0.885 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.486 -3.063 -16.109 21.231 hybrid contribution 1.388 0.087 0.708 1.561 sum -12.098 -2.975 -15.401 19.810 Atomic orbital electron populations 1.21790 0.95476 1.01922 1.01782 1.21295 0.95222 0.94697 1.03594 1.21696 0.91366 1.00108 1.04327 1.20440 0.90120 0.81971 0.75850 1.90704 1.70549 1.30607 1.50253 1.48556 1.07026 1.06161 1.73352 1.22437 0.97178 0.81675 1.00979 1.23206 0.92800 0.99232 1.02766 1.21807 0.94864 0.92801 0.83245 1.21688 0.81104 0.93795 1.03231 1.22663 0.96114 0.88367 1.01935 1.61855 1.40211 1.15275 1.05981 1.21896 0.91753 1.01832 0.93083 1.19689 0.86730 0.85007 0.85811 1.90488 1.19079 1.52727 1.83863 1.41889 1.11231 1.60657 1.06208 1.19732 0.97614 1.43791 0.81623 0.87839 1.25269 0.94969 0.97254 1.00465 1.69618 1.02643 1.48133 1.33824 0.85809 0.78960 0.77914 0.81720 1.19200 1.20751 1.20733 1.22825 0.97616 1.01481 0.89497 1.22701 0.96735 0.82124 0.99619 1.87851 1.90454 1.23811 1.26903 0.92741 0.92425 0.92611 0.91299 0.91155 0.88848 0.89036 0.90471 0.91189 0.88270 0.88995 0.90331 0.89649 0.94612 0.86929 0.89047 0.93397 0.77510 0.91891 0.89578 0.94165 0.88487 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.68 16 2 C -0.11 -1.01 5.22 -26.73 -0.14 -1.15 16 3 C -0.14 -1.24 4.71 -27.88 -0.13 -1.37 16 4 C 0.53 7.02 7.85 -10.98 -0.09 6.93 16 5 O -0.54 -9.27 16.31 5.56 0.09 -9.18 16 6 N -0.62 -7.87 3.33 -170.69 -0.57 -8.44 16 7 C 0.10 1.03 6.69 -2.44 -0.02 1.01 16 8 C -0.14 -1.77 5.86 -24.86 -0.15 -1.91 16 9 C 0.11 1.52 0.83 -89.81 -0.07 1.45 16 10 C 0.12 1.73 6.24 -3.33 -0.02 1.71 16 11 C 0.04 0.59 3.82 -4.03 -0.02 0.57 16 12 N -0.51 -7.84 4.24 -236.11 -1.00 -8.84 16 13 C 0.05 0.77 5.45 -4.98 -0.03 0.74 16 14 C 0.44 9.93 7.37 -10.99 -0.08 9.85 16 15 O -0.58 -14.60 14.24 5.54 0.08 -14.52 16 16 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 17 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 21 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.01 0.17 5.63 -3.70 -0.02 0.15 16 26 C 0.06 0.68 6.77 37.21 0.25 0.94 16 27 O -0.37 -4.77 10.28 -35.23 -0.36 -5.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.09 0.73 7.85 -51.93 -0.41 0.32 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.65 7.48 -51.93 -0.39 0.26 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.47 7.94 -51.93 -0.41 1.06 16 38 H 0.09 1.08 6.20 -51.93 -0.32 0.76 16 39 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 40 H 0.09 1.26 7.80 -51.93 -0.40 0.85 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.11 2.12 6.02 -51.93 -0.31 1.81 16 43 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 48 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.06 0.65 6.38 -51.93 -0.33 0.31 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -32.33 395.79 -8.85 -41.18 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -8.31 Total: 10.08 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -0.38 Total: 10.48 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.90 Total: -54.63 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.19 Total: -28.84 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.33 -8.85 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717571965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.185 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds