Wall clock time and date at job start Tue Mar 31 2020 23:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46872 * 2 1 4 4 C 1.50699 * 109.46792 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00300 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99521 * 180.02562 * 4 3 2 7 7 C 1.47484 * 125.66645 * 359.97354 * 6 4 3 8 8 C 1.55020 * 104.91145 * 155.98619 * 7 6 4 9 9 C 1.54539 * 101.48763 * 36.40223 * 8 7 6 10 10 C 1.47182 * 125.65941 * 180.02562 * 6 4 3 11 11 C 1.52335 * 110.10437 * 206.75719 * 9 8 7 12 12 N 1.47149 * 109.30732 * 292.50191 * 11 9 8 13 13 C 1.46894 * 111.00452 * 178.89171 * 12 11 9 14 14 C 1.50697 * 109.47348 * 293.65129 * 13 12 11 15 15 O 1.21296 * 120.00025 * 353.71462 * 14 13 12 16 16 N 1.34778 * 120.00165 * 173.72116 * 14 13 12 17 17 C 1.37097 * 119.99960 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99716 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99837 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00035 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99617 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47549 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47105 * 120.00172 * 21 19 17 24 24 H 1.48499 * 109.46996 * 239.99896 * 21 19 17 25 25 C 1.47023 * 110.67747 * 302.61851 * 12 11 9 26 26 C 1.53106 * 109.37802 * 59.15631 * 25 12 11 27 27 O 1.42139 * 110.26298 * 83.81423 * 9 8 7 28 28 H 1.09001 * 109.46973 * 60.00345 * 1 2 3 29 29 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47445 * 300.00184 * 1 2 3 31 31 H 1.08998 * 109.47377 * 240.00578 * 2 1 3 32 32 H 1.09001 * 109.46973 * 119.99655 * 2 1 3 33 33 H 1.08998 * 109.46648 * 60.00131 * 3 2 1 34 34 H 1.08995 * 109.47154 * 300.00298 * 3 2 1 35 35 H 1.09004 * 110.34522 * 37.13411 * 7 6 4 36 36 H 1.08998 * 110.44783 * 274.90100 * 7 6 4 37 37 H 1.08994 * 111.02117 * 278.35385 * 8 7 6 38 38 H 1.08996 * 111.05222 * 154.46620 * 8 7 6 39 39 H 1.08992 * 109.91603 * 62.10614 * 10 6 4 40 40 H 1.08999 * 109.91132 * 300.83005 * 10 6 4 41 41 H 1.08993 * 109.50140 * 172.55210 * 11 9 8 42 42 H 1.09006 * 109.52655 * 52.46399 * 11 9 8 43 43 H 1.09001 * 109.47336 * 173.64388 * 13 12 11 44 44 H 1.09002 * 109.46839 * 53.65302 * 13 12 11 45 45 H 0.97000 * 119.99897 * 359.97438 * 16 14 13 46 46 H 0.97003 * 119.99637 * 180.02562 * 20 19 17 47 47 H 1.09007 * 109.49074 * 179.12457 * 25 12 11 48 48 H 1.08998 * 109.48630 * 299.18504 * 25 12 11 49 49 H 1.08997 * 109.51850 * 182.66220 * 26 25 12 50 50 H 1.09002 * 109.55998 * 62.51669 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6098 0.0013 7 6 3.6130 3.9536 0.0009 8 6 4.6948 4.8809 0.6114 9 6 5.9899 4.2607 0.0402 10 6 5.6854 2.7551 0.0014 11 6 7.1623 4.5480 0.9695 12 7 7.4514 5.9907 0.9563 13 6 8.5616 6.3136 1.8623 14 6 8.1410 6.0519 3.2855 15 8 6.9932 5.7471 3.5324 16 7 9.0401 6.1566 4.2841 17 6 8.6572 5.9190 5.5789 18 1 7.6351 5.6484 5.7987 19 6 9.5843 6.0265 6.6083 20 7 10.8282 6.3553 6.3407 21 14 9.0628 5.7021 8.3725 22 1 7.6205 5.3501 8.4056 23 1 9.8592 4.5770 8.9252 24 1 9.2944 6.9205 9.1891 25 6 7.7361 6.4506 -0.4108 26 6 6.5285 6.1608 -1.3062 27 8 6.2393 4.7592 -1.2674 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 2.7139 3.9631 0.6171 36 1 3.3774 4.2647 -1.0169 37 1 4.6842 4.8301 1.7001 38 1 4.5690 5.9079 0.2687 39 1 6.1022 2.3151 -0.9045 40 1 6.1066 2.2686 0.8812 41 1 8.0396 3.9981 0.6292 42 1 6.9085 4.2371 1.9830 43 1 8.8288 7.3643 1.7497 44 1 9.4227 5.6917 1.6177 45 1 9.9581 6.4001 4.0866 46 1 11.4754 6.4299 7.0594 47 1 7.9320 7.5229 -0.4005 48 1 8.6095 5.9249 -0.7968 49 1 6.7548 6.4576 -2.3303 50 1 5.6651 6.7208 -0.9470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717571965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:30 Heat of formation + Delta-G solvation = -131.192702 kcal Electronic energy + Delta-G solvation = -30644.745838 eV Core-core repulsion = 26477.980205 eV Total energy + Delta-G solvation = -4166.765634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.89788 -40.61249 -39.87201 -37.78277 -36.53597 -35.74635 -35.32179 -33.29994 -33.04131 -31.04699 -30.33276 -29.42635 -27.74036 -26.75250 -25.39005 -24.24207 -23.33838 -22.38458 -21.03394 -20.62203 -20.07975 -19.86983 -18.31129 -17.99197 -17.73788 -17.16540 -16.96891 -16.60858 -16.47339 -16.18132 -15.88905 -15.80833 -15.63720 -15.31636 -15.12755 -14.70663 -14.36567 -14.26784 -14.07771 -13.95652 -13.62642 -13.57033 -13.44778 -13.17873 -12.88886 -12.85525 -12.78681 -12.67533 -12.41570 -12.39730 -12.23033 -12.13286 -12.10938 -11.95691 -11.63516 -11.50360 -11.38981 -10.98910 -10.68926 -10.22789 -9.99862 -9.77806 -9.32164 -8.47283 -5.95259 1.35203 1.40703 1.54318 1.56124 1.85541 2.05258 2.26327 2.55495 2.64411 3.19374 3.24441 3.46286 3.48893 3.70417 3.81020 3.97679 4.00321 4.06053 4.09073 4.22576 4.26036 4.28227 4.39095 4.42110 4.47238 4.50803 4.54868 4.59547 4.60607 4.68311 4.71191 4.75841 4.77417 4.84384 4.88498 4.97050 5.06225 5.14740 5.20729 5.22522 5.27048 5.40805 5.46289 5.75188 5.96168 6.07114 6.19004 6.44795 6.60094 7.06807 7.13030 7.56746 8.11976 8.70402 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.002804 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.851162 B = 9981.570537 C =11895.286202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.126 4.126 4 C 0.518 3.482 5 O -0.592 6.592 6 N -0.618 5.618 7 C 0.105 3.895 8 C -0.138 4.138 9 C 0.124 3.876 10 C 0.123 3.877 11 C 0.042 3.958 12 N -0.519 5.519 13 C 0.057 3.943 14 C 0.442 3.558 15 O -0.608 6.608 16 N -0.576 5.576 17 C -0.327 4.327 18 H 0.079 0.921 19 C -0.015 4.015 20 N -0.922 5.922 21 Si 0.990 3.010 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.270 1.270 25 C 0.013 3.987 26 C 0.062 3.938 27 O -0.376 6.376 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.061 0.939 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.109 0.891 48 H 0.044 0.956 49 H 0.131 0.869 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 -0.820 -18.006 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.166 4.166 4 C 0.309 3.691 5 O -0.473 6.473 6 N -0.352 5.352 7 C -0.017 4.017 8 C -0.176 4.176 9 C 0.084 3.916 10 C 0.000 4.000 11 C -0.087 4.087 12 N -0.244 5.244 13 C -0.075 4.075 14 C 0.229 3.771 15 O -0.494 6.494 16 N -0.214 5.214 17 C -0.457 4.457 18 H 0.097 0.903 19 C -0.214 4.214 20 N -0.563 5.563 21 Si 0.814 3.186 22 H -0.197 1.197 23 H -0.199 1.199 24 H -0.195 1.195 25 C -0.115 4.115 26 C -0.014 4.014 27 O -0.295 6.295 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.136 0.864 44 H 0.079 0.921 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.127 0.873 48 H 0.062 0.938 49 H 0.148 0.852 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.870 -1.473 -17.726 23.184 hybrid contribution 1.839 -0.377 1.134 2.193 sum -13.031 -1.850 -16.592 21.178 Atomic orbital electron populations 1.21746 0.93238 1.02490 1.02853 1.21280 0.97045 0.94565 1.01961 1.21766 0.87794 1.00491 1.06501 1.21319 0.91862 0.81250 0.74673 1.90677 1.71822 1.32315 1.52485 1.48708 1.06505 1.07257 1.72731 1.22596 0.96939 0.79517 1.02614 1.23101 0.93142 1.00458 1.00875 1.21539 0.94304 0.92428 0.83370 1.21567 0.82352 0.94224 1.01904 1.22483 0.97020 0.88867 1.00285 1.61832 1.39817 1.14777 1.08013 1.21783 0.92517 1.03628 0.89523 1.20713 0.85921 0.82758 0.87707 1.90471 1.20564 1.53420 1.84951 1.41960 1.11724 1.61702 1.06016 1.19658 0.96981 1.45584 0.83456 0.90273 1.26012 0.94913 0.96652 1.03834 1.69677 1.03207 1.48339 1.35061 0.84906 0.78221 0.78228 0.77220 1.19742 1.19915 1.19542 1.22999 0.98528 1.02751 0.87199 1.22972 0.96397 0.80811 1.01204 1.87852 1.90461 1.25380 1.25791 0.91310 0.92224 0.91805 0.92656 0.93268 0.86916 0.86168 0.87967 0.88830 0.91399 0.87757 0.90915 0.91890 0.95067 0.90957 0.86398 0.92068 0.77144 0.91400 0.87302 0.93802 0.85177 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.11 -1.96 5.22 30.60 0.16 -1.80 16 3 C -0.13 -2.07 4.71 29.85 0.14 -1.93 16 4 C 0.52 13.74 7.85 87.66 0.69 14.43 16 5 O -0.59 -21.09 16.31 -3.02 -0.05 -21.14 16 6 N -0.62 -15.55 3.33 -812.33 -2.71 -18.26 16 7 C 0.10 1.93 6.69 86.88 0.58 2.51 16 8 C -0.14 -3.31 5.86 31.81 0.19 -3.12 16 9 C 0.12 3.31 0.83 -10.27 -0.01 3.30 16 10 C 0.12 3.54 6.24 86.47 0.54 4.08 16 11 C 0.04 1.36 3.82 86.04 0.33 1.69 16 12 N -0.52 -15.53 4.24 -900.93 -3.82 -19.35 16 13 C 0.06 1.87 5.45 85.56 0.47 2.33 16 14 C 0.44 20.31 7.37 87.66 0.65 20.96 16 15 O -0.61 -32.02 14.24 -3.08 -0.04 -32.07 16 16 N -0.58 -29.08 5.29 -306.98 -1.62 -30.71 16 17 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 18 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 20 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 21 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 C 0.01 0.26 5.63 86.32 0.49 0.75 16 26 C 0.06 1.10 6.77 72.02 0.49 1.59 16 27 O -0.38 -8.87 10.28 -148.98 -1.53 -10.40 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 33 H 0.11 1.46 7.85 -2.39 -0.02 1.44 16 34 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.40 7.48 -2.38 -0.02 1.39 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 2.08 7.94 -2.39 -0.02 2.06 16 38 H 0.10 2.23 6.20 -2.39 -0.01 2.21 16 39 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 40 H 0.06 2.05 7.80 -2.39 -0.02 2.03 16 41 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 2.92 6.02 -2.38 -0.01 2.91 16 43 H 0.12 3.30 8.03 -2.39 -0.02 3.28 16 44 H 0.06 1.88 8.12 -2.39 -0.02 1.86 16 45 H 0.39 19.04 7.90 -92.71 -0.73 18.31 16 46 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 47 H 0.11 1.81 8.08 -2.38 -0.02 1.79 16 48 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.07 1.18 6.38 -2.39 -0.02 1.17 16 Total: -1.00 -73.77 395.79 -0.56 -74.33 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.21 Total: 36.04 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 6.69 Total: 25.93 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -7.87 Total: -117.68 kcal Atomic # 8 Polarization: -61.99 SS G_CDS: -1.62 Total: -63.61 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -73.77 -0.56 -74.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717571965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.864 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds