Wall clock time and date at job start Tue Mar 31 2020 23:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09000 * 109.82176 * 305.87485 * 3 2 1 5 5 C 1.54384 * 109.82768 * 184.99810 * 3 2 1 6 6 C 1.55301 * 102.25227 * 219.12704 * 5 3 2 7 7 C 1.54950 * 100.94263 * 34.13262 * 6 5 3 8 8 H 1.08995 * 110.30826 * 82.57216 * 7 6 5 9 9 C 1.50697 * 110.30886 * 204.63932 * 7 6 5 10 10 O 1.21282 * 119.99638 * 114.99808 * 9 7 6 11 11 N 1.34776 * 120.00601 * 294.99998 * 9 7 6 12 12 C 1.46500 * 120.00313 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47037 * 174.31414 * 12 11 9 14 14 N 1.46906 * 115.55329 * 323.74522 * 13 12 11 15 15 C 1.46898 * 110.99893 * 294.72541 * 14 13 12 16 16 C 1.50699 * 109.47349 * 179.59164 * 15 14 13 17 17 O 1.21295 * 119.99708 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00326 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00528 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99385 * 359.97438 * 19 18 16 21 21 C 1.38942 * 120.00526 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00023 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00050 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47121 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46952 * 120.00467 * 23 21 19 26 26 H 1.48501 * 109.47463 * 240.00089 * 23 21 19 27 27 C 1.53001 * 117.50009 * 109.41384 * 13 12 11 28 28 C 1.52994 * 117.50017 * 178.07313 * 13 12 11 29 29 O 1.43227 * 109.83530 * 66.86320 * 3 2 1 30 30 H 1.09000 * 109.47266 * 300.00466 * 1 2 3 31 31 H 1.09004 * 109.46865 * 60.00754 * 1 2 3 32 32 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47266 * 239.99534 * 2 1 3 34 34 H 1.09006 * 109.46996 * 119.99768 * 2 1 3 35 35 H 1.09001 * 110.85101 * 100.93523 * 5 3 2 36 36 H 1.08997 * 111.02339 * 337.39361 * 5 3 2 37 37 H 1.09009 * 111.12752 * 276.21363 * 6 5 3 38 38 H 1.09000 * 111.16232 * 152.06948 * 6 5 3 39 39 H 0.97004 * 119.99563 * 359.97438 * 11 9 7 40 40 H 1.09006 * 109.46945 * 54.31656 * 12 11 9 41 41 H 1.09001 * 109.46920 * 294.31619 * 12 11 9 42 42 H 1.00903 * 110.99515 * 58.67502 * 14 13 12 43 43 H 1.09000 * 109.47488 * 59.58884 * 15 14 13 44 44 H 1.09000 * 109.46965 * 299.59412 * 15 14 13 45 45 H 0.96999 * 119.99971 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00356 * 180.02562 * 22 21 19 47 47 H 1.09000 * 117.49943 * 215.00603 * 27 13 12 48 48 H 1.09002 * 117.49707 * 0.02562 * 27 13 12 49 49 H 1.09006 * 117.50019 * 359.97438 * 28 13 12 50 50 H 1.09008 * 117.50234 * 144.99556 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9913 -0.8309 5 6 3.5786 1.4540 -0.1265 6 6 3.9798 2.6054 0.8353 7 6 2.8993 2.4590 1.9362 8 1 3.1872 1.6856 2.6483 9 6 2.6945 3.7724 2.6461 10 8 1.6306 4.3484 2.5606 11 7 3.6935 4.3070 3.3759 12 6 3.4942 5.5836 4.0664 13 6 4.7192 5.8934 4.9291 14 7 5.3542 4.7330 5.5680 15 6 4.4546 4.1160 6.5519 16 6 5.1349 2.9259 7.1778 17 8 6.2586 2.6213 6.8374 18 7 4.4945 2.1994 8.1151 19 6 5.1136 1.1170 8.6849 20 1 6.1145 0.8463 8.3823 21 6 4.4536 0.3683 9.6515 22 7 3.2357 0.6974 10.0192 23 14 5.2970 -1.1069 10.4273 24 1 6.6536 -1.2646 9.8443 25 1 5.4099 -0.8982 11.8933 26 1 4.4982 -2.3302 10.1616 27 6 5.6295 7.0377 4.4785 28 6 4.7243 7.2149 5.7000 29 8 1.7029 2.0771 1.2389 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.8821 1.6790 -1.1489 36 1 4.0051 0.5067 0.2033 37 1 3.9076 3.5739 0.3404 38 1 4.9788 2.4483 1.2420 39 1 4.5443 3.8461 3.4445 40 1 2.6100 5.5194 4.7006 41 1 3.3574 6.3768 3.3314 42 1 5.6529 4.0593 4.8788 43 1 3.5401 3.7920 6.0551 44 1 4.2093 4.8431 7.3261 45 1 3.5958 2.4427 8.3870 46 1 2.7751 0.1749 10.6943 47 1 6.6995 6.9293 4.6561 48 1 5.3554 7.5699 3.5676 49 1 3.8551 7.8639 5.5923 50 1 5.1988 7.2233 6.6814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723520344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:38 Heat of formation + Delta-G solvation = -96.073645 kcal Electronic energy + Delta-G solvation = -30111.999451 eV Core-core repulsion = 25946.756694 eV Total energy + Delta-G solvation = -4165.242757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.61365 -39.37167 -38.38626 -37.68041 -34.34254 -34.06878 -33.77932 -32.76775 -32.38605 -31.22664 -29.40661 -27.02916 -26.48699 -24.29725 -24.13031 -22.48625 -22.20206 -21.34429 -20.36253 -19.64785 -19.23118 -18.04576 -17.89435 -17.24699 -16.46095 -16.05629 -15.80010 -15.41941 -15.10611 -14.89378 -14.53063 -14.41795 -14.18504 -14.09375 -13.98900 -13.67060 -13.44512 -13.39214 -13.18947 -12.97534 -12.47116 -12.25836 -12.25362 -12.12607 -11.74123 -11.63057 -11.51566 -11.48041 -11.26602 -11.13076 -11.09428 -10.97139 -10.67024 -10.36924 -10.26367 -10.16702 -10.01438 -9.55537 -9.51779 -9.18396 -8.58744 -8.22779 -8.00134 -6.44526 -3.85863 2.47214 2.70322 3.14083 3.25044 3.31657 3.57312 3.72343 3.85018 3.94926 4.08231 4.20576 4.36452 4.40687 4.49034 4.74186 4.77136 4.85761 4.89141 4.91691 4.99639 5.11710 5.18131 5.20055 5.24148 5.37024 5.43929 5.45110 5.50035 5.53341 5.59025 5.60528 5.62212 5.70820 5.76649 5.83519 5.90618 5.93954 6.00325 6.13527 6.14944 6.20494 6.23203 6.71610 7.08369 7.28463 7.48368 7.52324 8.02383 8.08732 8.56779 9.14181 9.50330 10.00769 10.73011 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007513 B = 0.003306 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3725.834585 B = 8466.149499 C =11176.881950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.077 3.923 4 H 0.081 0.919 5 C -0.150 4.150 6 C -0.146 4.146 7 C 0.063 3.937 8 H 0.100 0.900 9 C 0.517 3.483 10 O -0.521 6.521 11 N -0.725 5.725 12 C 0.132 3.868 13 C 0.013 3.987 14 N -0.623 5.623 15 C 0.051 3.949 16 C 0.439 3.561 17 O -0.586 6.586 18 N -0.561 5.561 19 C -0.301 4.301 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.899 5.899 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.154 4.154 28 C -0.150 4.150 29 O -0.344 6.344 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.399 0.601 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.346 0.654 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 6.231 -19.471 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.019 3.981 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.184 4.184 7 C 0.002 3.998 8 H 0.118 0.882 9 C 0.302 3.698 10 O -0.396 6.396 11 N -0.380 5.380 12 C 0.006 3.994 13 C -0.080 4.080 14 N -0.256 5.256 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.471 6.471 18 N -0.197 5.197 19 C -0.430 4.430 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.540 5.540 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.191 4.191 28 C -0.188 4.188 29 O -0.263 6.263 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.235 0.765 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.167 0.833 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.122 0.878 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.039 6.729 -19.074 20.252 hybrid contribution -0.300 -1.359 0.147 1.400 sum -1.339 5.369 -18.926 19.719 Atomic orbital electron populations 1.21714 0.95163 1.01464 1.02429 1.21919 0.97203 0.95465 1.02543 1.22879 0.94235 0.93763 0.87203 0.90070 1.23191 0.95291 0.99385 1.00854 1.23249 0.99108 1.00203 0.95818 1.22823 0.86675 0.94681 0.95661 0.88203 1.20416 0.83904 0.86475 0.79031 1.90719 1.25582 1.62112 1.61150 1.45882 1.16536 1.24088 1.51541 1.21352 0.97800 0.85265 0.94954 1.21690 0.96084 0.89164 1.01015 1.60026 1.38271 1.09732 1.17530 1.21673 0.94007 0.96582 0.95890 1.19761 0.87700 0.85804 0.84280 1.90520 1.19492 1.71832 1.65227 1.41865 1.16904 1.26215 1.34694 1.19742 1.01141 1.03996 1.18143 0.87839 1.25274 0.95788 0.99511 0.97304 1.69620 1.11801 1.40687 1.31900 0.85806 0.79359 0.80491 0.78722 1.19200 1.20702 1.20734 1.23168 0.98388 0.99293 0.98274 1.23058 1.01934 0.96342 0.97507 1.88569 1.27105 1.77869 1.32719 0.91773 0.92965 0.92859 0.91001 0.91205 0.89623 0.89750 0.89837 0.88763 0.76504 0.90638 0.90998 0.83258 0.93573 0.89373 0.77433 0.91843 0.87798 0.88708 0.88539 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.83 37.16 0.37 -1.02 16 2 C -0.13 -1.16 5.51 -26.73 -0.15 -1.30 16 3 C 0.08 0.73 3.51 -26.01 -0.09 0.64 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -1.09 6.54 -24.79 -0.16 -1.25 16 6 C -0.15 -1.20 6.55 -24.48 -0.16 -1.36 16 7 C 0.06 0.73 3.86 -26.86 -0.10 0.63 16 8 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 9 C 0.52 7.18 7.19 -10.99 -0.08 7.10 16 10 O -0.52 -9.35 16.54 -13.80 -0.23 -9.58 16 11 N -0.72 -8.52 5.31 -60.29 -0.32 -8.84 16 12 C 0.13 1.55 5.08 -4.04 -0.02 1.53 16 13 C 0.01 0.16 2.06 -131.60 -0.27 -0.12 16 14 N -0.62 -9.26 6.06 -101.22 -0.61 -9.88 16 15 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 16 C 0.44 10.07 7.82 -10.99 -0.09 9.98 16 17 O -0.59 -15.27 15.77 5.54 0.09 -15.19 16 18 N -0.56 -14.04 5.29 -10.97 -0.06 -14.10 16 19 C -0.30 -8.28 9.68 -14.94 -0.14 -8.43 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 23 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.15 -1.50 10.11 -26.70 -0.27 -1.77 16 28 C -0.15 -1.56 10.17 -26.70 -0.27 -1.84 16 29 O -0.34 -4.61 9.90 -54.58 -0.54 -5.15 16 30 H 0.06 0.72 7.90 -51.93 -0.41 0.31 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 37 H 0.08 0.69 8.05 -51.92 -0.42 0.28 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 4.19 6.72 -40.82 -0.27 3.91 16 40 H 0.08 1.01 8.11 -51.93 -0.42 0.58 16 41 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 42 H 0.35 5.11 6.66 -39.29 -0.26 4.85 16 43 H 0.05 0.76 7.50 -51.93 -0.39 0.38 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 47 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.11 1.21 8.14 -51.92 -0.42 0.78 16 LS Contribution 412.05 15.07 6.21 6.21 Total: -1.00 -33.67 412.05 -9.65 -43.32 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -8.32 Total: 16.90 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.57 Total: 4.17 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.27 Total: -56.52 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.68 Total: -29.92 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.67 -9.65 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723520344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.752 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds