Wall clock time and date at job start Tue Mar 31 2020 23:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09000 * 109.82176 * 305.87485 * 3 2 1 5 5 C 1.54384 * 109.82768 * 184.99810 * 3 2 1 6 6 C 1.55301 * 102.25227 * 219.12704 * 5 3 2 7 7 C 1.54950 * 100.94263 * 34.13262 * 6 5 3 8 8 H 1.08995 * 110.30826 * 82.57216 * 7 6 5 9 9 C 1.50697 * 110.30886 * 204.63932 * 7 6 5 10 10 O 1.21282 * 119.99638 * 114.99808 * 9 7 6 11 11 N 1.34776 * 120.00601 * 294.99998 * 9 7 6 12 12 C 1.46500 * 120.00313 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47037 * 174.31414 * 12 11 9 14 14 N 1.46906 * 115.55329 * 323.74522 * 13 12 11 15 15 C 1.46898 * 110.99893 * 294.72541 * 14 13 12 16 16 C 1.50699 * 109.47349 * 179.59164 * 15 14 13 17 17 O 1.21295 * 119.99708 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00326 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00528 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99385 * 359.97438 * 19 18 16 21 21 C 1.38942 * 120.00526 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00023 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00050 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47121 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46952 * 120.00467 * 23 21 19 26 26 H 1.48501 * 109.47463 * 240.00089 * 23 21 19 27 27 C 1.53001 * 117.50009 * 109.41384 * 13 12 11 28 28 C 1.52994 * 117.50017 * 178.07313 * 13 12 11 29 29 O 1.43227 * 109.83530 * 66.86320 * 3 2 1 30 30 H 1.09000 * 109.47266 * 300.00466 * 1 2 3 31 31 H 1.09004 * 109.46865 * 60.00754 * 1 2 3 32 32 H 1.08997 * 109.46971 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47266 * 239.99534 * 2 1 3 34 34 H 1.09006 * 109.46996 * 119.99768 * 2 1 3 35 35 H 1.09001 * 110.85101 * 100.93523 * 5 3 2 36 36 H 1.08997 * 111.02339 * 337.39361 * 5 3 2 37 37 H 1.09009 * 111.12752 * 276.21363 * 6 5 3 38 38 H 1.09000 * 111.16232 * 152.06948 * 6 5 3 39 39 H 0.97004 * 119.99563 * 359.97438 * 11 9 7 40 40 H 1.09006 * 109.46945 * 54.31656 * 12 11 9 41 41 H 1.09001 * 109.46920 * 294.31619 * 12 11 9 42 42 H 1.00903 * 110.99515 * 58.67502 * 14 13 12 43 43 H 1.09000 * 109.47488 * 59.58884 * 15 14 13 44 44 H 1.09000 * 109.46965 * 299.59412 * 15 14 13 45 45 H 0.96999 * 119.99971 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00356 * 180.02562 * 22 21 19 47 47 H 1.09000 * 117.49943 * 215.00603 * 27 13 12 48 48 H 1.09002 * 117.49707 * 0.02562 * 27 13 12 49 49 H 1.09006 * 117.50019 * 359.97438 * 28 13 12 50 50 H 1.09008 * 117.50234 * 144.99556 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9913 -0.8309 5 6 3.5786 1.4540 -0.1265 6 6 3.9798 2.6054 0.8353 7 6 2.8993 2.4590 1.9362 8 1 3.1872 1.6856 2.6483 9 6 2.6945 3.7724 2.6461 10 8 1.6306 4.3484 2.5606 11 7 3.6935 4.3070 3.3759 12 6 3.4942 5.5836 4.0664 13 6 4.7192 5.8934 4.9291 14 7 5.3542 4.7330 5.5680 15 6 4.4546 4.1160 6.5519 16 6 5.1349 2.9259 7.1778 17 8 6.2586 2.6213 6.8374 18 7 4.4945 2.1994 8.1151 19 6 5.1136 1.1170 8.6849 20 1 6.1145 0.8463 8.3823 21 6 4.4536 0.3683 9.6515 22 7 3.2357 0.6974 10.0192 23 14 5.2970 -1.1069 10.4273 24 1 6.6536 -1.2646 9.8443 25 1 5.4099 -0.8982 11.8933 26 1 4.4982 -2.3302 10.1616 27 6 5.6295 7.0377 4.4785 28 6 4.7243 7.2149 5.7000 29 8 1.7029 2.0771 1.2389 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.8821 1.6790 -1.1489 36 1 4.0051 0.5067 0.2033 37 1 3.9076 3.5739 0.3404 38 1 4.9788 2.4483 1.2420 39 1 4.5443 3.8461 3.4445 40 1 2.6100 5.5194 4.7006 41 1 3.3574 6.3768 3.3314 42 1 5.6529 4.0593 4.8788 43 1 3.5401 3.7920 6.0551 44 1 4.2093 4.8431 7.3261 45 1 3.5958 2.4427 8.3870 46 1 2.7751 0.1749 10.6943 47 1 6.6995 6.9293 4.6561 48 1 5.3554 7.5699 3.5676 49 1 3.8551 7.8639 5.5923 50 1 5.1988 7.2233 6.6814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723520344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:36 Heat of formation + Delta-G solvation = -120.510048 kcal Electronic energy + Delta-G solvation = -30113.059093 eV Core-core repulsion = 25946.756694 eV Total energy + Delta-G solvation = -4166.302399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.56851 -40.49751 -39.83113 -38.94894 -36.02782 -35.38437 -34.53377 -34.10037 -33.23416 -33.14816 -30.24727 -28.39524 -27.67857 -25.93228 -25.10210 -23.33309 -22.88875 -22.14923 -21.35276 -21.08124 -20.57389 -19.90837 -18.98557 -18.22412 -17.70867 -17.07177 -17.03744 -16.71525 -16.50430 -16.09082 -16.01975 -15.75762 -15.24810 -15.17091 -15.07967 -14.89783 -14.53139 -14.19268 -14.05285 -13.98201 -13.92645 -13.63747 -13.48318 -13.14607 -13.01430 -12.83598 -12.81171 -12.45290 -12.41404 -12.27135 -12.11452 -11.93360 -11.84224 -11.65473 -11.56950 -11.51643 -11.13979 -10.93373 -10.48299 -10.37705 -10.20009 -10.03720 -9.54773 -8.47856 -5.97108 1.35941 1.41077 1.41643 1.55832 1.75636 2.01640 2.26902 2.65208 2.87950 2.89176 3.19465 3.35302 3.41033 3.55417 3.58147 3.72796 3.95715 4.00455 4.05699 4.11735 4.18514 4.23610 4.28919 4.38120 4.42487 4.48953 4.51198 4.61621 4.65370 4.69263 4.77196 4.81056 4.84489 4.91228 4.93089 5.03916 5.08946 5.09919 5.21323 5.30474 5.36748 5.38353 5.40009 5.81530 5.92171 6.03613 6.24462 6.37679 6.56555 7.04528 7.10379 7.53257 8.06909 8.69714 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007513 B = 0.003306 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3725.834585 B = 8466.149499 C =11176.881950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.066 3.934 4 H 0.083 0.917 5 C -0.141 4.141 6 C -0.138 4.138 7 C 0.057 3.943 8 H 0.100 0.900 9 C 0.514 3.486 10 O -0.569 6.569 11 N -0.714 5.714 12 C 0.137 3.863 13 C 0.002 3.998 14 N -0.629 5.629 15 C 0.069 3.931 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.083 0.917 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.133 4.133 28 C -0.149 4.149 29 O -0.379 6.379 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.407 0.593 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.346 0.654 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.394 0.606 46 H 0.277 0.723 47 H 0.100 0.900 48 H 0.119 0.881 49 H 0.115 0.885 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 6.411 -20.685 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.009 3.991 4 H 0.101 0.899 5 C -0.178 4.178 6 C -0.176 4.176 7 C -0.004 4.004 8 H 0.118 0.882 9 C 0.300 3.700 10 O -0.447 6.447 11 N -0.368 5.368 12 C 0.011 3.989 13 C -0.091 4.091 14 N -0.262 5.262 15 C -0.063 4.063 16 C 0.227 3.773 17 O -0.504 6.504 18 N -0.209 5.209 19 C -0.461 4.461 20 H 0.101 0.899 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.170 4.170 28 C -0.187 4.187 29 O -0.298 6.298 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.244 0.756 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.167 0.833 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.227 0.773 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.137 0.863 49 H 0.133 0.867 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.045 6.925 -20.289 21.438 hybrid contribution -0.630 -1.350 0.495 1.570 sum -0.585 5.575 -19.794 20.572 Atomic orbital electron populations 1.21715 0.95946 1.01763 1.01406 1.21931 0.96538 0.95161 1.03250 1.23116 0.96169 0.93889 0.85885 0.89887 1.23203 0.93272 0.99397 1.01944 1.23272 0.98784 1.00751 0.94754 1.22935 0.87572 0.93225 0.96642 0.88219 1.20897 0.83369 0.86974 0.78720 1.90688 1.27410 1.63621 1.63018 1.45828 1.16394 1.24046 1.50562 1.21324 0.97116 0.85526 0.94940 1.21693 0.96870 0.88407 1.02108 1.60007 1.38174 1.10338 1.17681 1.21433 0.93840 0.94378 0.96630 1.20699 0.87242 0.86311 0.82999 1.90490 1.21076 1.72903 1.65928 1.41950 1.17060 1.26373 1.35548 1.19722 1.00907 1.05772 1.19729 0.89934 1.26069 0.96334 1.01765 0.97181 1.69689 1.12668 1.41678 1.32220 0.84862 0.78195 0.77273 0.77973 1.19419 1.19741 1.19723 1.23243 0.97837 0.97081 0.98863 1.23154 1.02805 0.95356 0.97338 1.88543 1.28575 1.78399 1.34300 0.94563 0.92190 0.91892 0.88429 0.92184 0.87277 0.88838 0.89795 0.86731 0.75609 0.92415 0.89725 0.83330 0.92834 0.88243 0.77259 0.91346 0.88159 0.86314 0.86666 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.83 71.98 0.71 -2.07 16 2 C -0.13 -2.15 5.51 30.59 0.17 -1.98 16 3 C 0.07 1.21 3.51 31.06 0.11 1.32 16 4 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 5 C -0.14 -1.73 6.54 31.85 0.21 -1.52 16 6 C -0.14 -2.03 6.55 32.05 0.21 -1.82 16 7 C 0.06 1.33 3.86 30.51 0.12 1.45 16 8 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 9 C 0.51 14.38 7.19 87.66 0.63 15.01 16 10 O -0.57 -21.00 16.54 15.47 0.26 -20.74 16 11 N -0.71 -16.30 5.31 -463.06 -2.46 -18.76 16 12 C 0.14 3.06 5.08 86.38 0.44 3.50 16 13 C 0.00 0.03 2.06 3.52 0.01 0.04 16 14 N -0.63 -18.09 6.06 -474.16 -2.87 -20.96 16 15 C 0.07 2.37 6.02 85.56 0.52 2.88 16 16 C 0.44 20.41 7.82 87.66 0.69 21.10 16 17 O -0.62 -32.62 15.77 -3.08 -0.05 -32.67 16 18 N -0.57 -29.26 5.29 -306.99 -1.62 -30.88 16 19 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 20 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.14 13.05 21.66 0.28 -49.85 16 23 Si 0.99 42.66 29.55 68.60 2.03 44.68 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 C -0.13 -2.22 10.11 30.62 0.31 -1.91 16 28 C -0.15 -2.77 10.17 30.61 0.31 -2.45 16 29 O -0.38 -10.36 9.90 -130.48 -1.29 -11.65 16 30 H 0.04 0.85 7.90 -2.39 -0.02 0.83 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 1.00 7.86 -2.39 -0.02 0.98 16 37 H 0.08 1.24 8.05 -2.38 -0.02 1.22 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.41 8.12 6.72 -92.71 -0.62 7.50 16 40 H 0.06 1.52 8.11 -2.38 -0.02 1.50 16 41 H 0.08 1.71 7.91 -2.39 -0.02 1.69 16 42 H 0.35 9.91 6.66 -89.69 -0.60 9.31 16 43 H 0.05 1.76 7.50 -2.39 -0.02 1.74 16 44 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.39 19.56 7.90 -92.71 -0.73 18.83 16 46 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 47 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.12 1.47 8.06 -2.39 -0.02 1.45 16 49 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 50 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -74.54 412.05 -1.02 -75.56 By element: Atomic # 1 Polarization: 50.83 SS G_CDS: -0.99 Total: 49.84 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 5.70 Total: 15.43 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -6.67 Total: -120.46 kcal Atomic # 8 Polarization: -63.98 SS G_CDS: -1.08 Total: -65.06 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -74.54 -1.02 -75.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723520344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.949 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds