Wall clock time and date at job start Tue Mar 31 2020 23:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46901 * 2 1 4 4 H 1.08991 * 109.82431 * 54.43671 * 3 2 1 5 5 C 1.54381 * 109.82755 * 175.41657 * 3 2 1 6 6 C 1.55306 * 102.25562 * 140.87270 * 5 3 2 7 7 C 1.54952 * 100.93685 * 325.86319 * 6 5 3 8 8 H 1.09003 * 110.39272 * 277.48754 * 7 6 5 9 9 C 1.50700 * 110.30504 * 155.35955 * 7 6 5 10 10 O 1.21285 * 120.00149 * 247.83189 * 9 7 6 11 11 N 1.34772 * 119.99930 * 67.83549 * 9 7 6 12 12 C 1.46499 * 120.00091 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47512 * 174.86694 * 12 11 9 14 14 N 1.46903 * 115.54620 * 325.03272 * 13 12 11 15 15 C 1.46898 * 110.99861 * 279.55899 * 14 13 12 16 16 C 1.50704 * 109.46669 * 174.70480 * 15 14 13 17 17 O 1.21292 * 120.00507 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99787 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00014 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00277 * 359.97438 * 19 18 16 21 21 C 1.38958 * 120.00011 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99726 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99749 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47161 * 59.99999 * 23 21 19 25 25 H 1.48503 * 109.46787 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47601 * 299.99440 * 23 21 19 27 27 C 1.52998 * 117.51981 * 110.73324 * 13 12 11 28 28 C 1.52997 * 60.00187 * 107.48304 * 27 13 12 29 29 O 1.43239 * 109.83010 * 293.54662 * 3 2 1 30 30 H 1.09002 * 109.47157 * 60.00093 * 1 2 3 31 31 H 1.09007 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47102 * 299.99813 * 1 2 3 33 33 H 1.09003 * 109.46774 * 240.00117 * 2 1 3 34 34 H 1.08997 * 109.47057 * 120.00394 * 2 1 3 35 35 H 1.08999 * 110.84631 * 259.06112 * 5 3 2 36 36 H 1.09004 * 110.85382 * 22.47130 * 5 3 2 37 37 H 1.08998 * 111.12555 * 207.94582 * 6 5 3 38 38 H 1.09000 * 111.12409 * 83.78028 * 6 5 3 39 39 H 0.97007 * 120.00257 * 359.97438 * 11 9 7 40 40 H 1.09003 * 109.47393 * 54.86673 * 12 11 9 41 41 H 1.08997 * 109.47163 * 294.86724 * 12 11 9 42 42 H 1.00903 * 110.99449 * 155.60365 * 14 13 12 43 43 H 1.09002 * 109.47298 * 294.70355 * 15 14 13 44 44 H 1.08995 * 109.47217 * 54.70672 * 15 14 13 45 45 H 0.97004 * 120.00244 * 359.97438 * 18 16 15 46 46 H 0.97003 * 119.99525 * 180.02562 * 22 21 19 47 47 H 1.08997 * 117.50127 * 214.97344 * 27 13 12 48 48 H 1.09003 * 117.49645 * 359.97438 * 27 13 12 49 49 H 1.09002 * 117.49899 * 252.51271 * 28 27 13 50 50 H 1.08995 * 117.52050 * 107.47605 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 0.8341 5 6 3.5794 1.4538 0.1161 6 6 3.9741 2.6075 -0.8457 7 6 2.8861 2.4636 -1.9396 8 1 3.1673 1.6914 -2.6558 9 6 2.6765 3.7787 -2.6450 10 8 1.6318 4.3797 -2.5096 11 7 3.6499 4.2870 -3.4263 12 6 3.4460 5.5652 -4.1124 13 6 4.7378 5.9746 -4.8228 14 7 5.9827 5.6124 -4.1322 15 6 6.2910 6.5730 -3.0644 16 6 7.4984 6.1000 -2.2965 17 8 8.0483 5.0648 -2.6084 18 7 7.9678 6.8278 -1.2638 19 6 9.0664 6.3978 -0.5656 20 1 9.5556 5.4757 -0.8427 21 6 9.5501 7.1479 0.4995 22 7 8.9546 8.2697 0.8370 23 14 11.0466 6.5616 1.4513 24 1 12.2075 6.4544 0.5314 25 1 11.3587 7.5329 2.5303 26 1 10.7638 5.2317 2.0484 27 6 4.7437 5.9436 -6.3525 28 6 4.7242 7.2838 -5.6146 29 8 1.6944 2.0801 -1.2353 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8898 1.6764 1.1369 36 1 4.0005 0.5053 -0.2174 37 1 4.9702 2.4507 -1.2594 38 1 3.9052 3.5748 -0.3480 39 1 4.4857 3.8065 -3.5343 40 1 3.1740 6.3293 -3.3841 41 1 2.6459 5.4606 -4.8451 42 1 6.7493 5.5380 -4.7841 43 1 6.4986 7.5492 -3.5026 44 1 5.4389 6.6516 -2.3893 45 1 7.5287 7.6562 -1.0151 46 1 9.2925 8.7934 1.5803 47 1 5.6713 5.6545 -6.8464 48 1 3.8272 5.6311 -6.8530 49 1 3.7949 7.8532 -5.6297 50 1 5.6389 7.8765 -5.6226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723520345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:42 Heat of formation + Delta-G solvation = -99.429676 kcal Electronic energy + Delta-G solvation = -30154.921103 eV Core-core repulsion = 25989.532818 eV Total energy + Delta-G solvation = -4165.388285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.39445 -39.30601 -38.36115 -37.72033 -34.16709 -34.03511 -33.69582 -32.61892 -32.18886 -31.23537 -29.29025 -26.93566 -26.52099 -24.19512 -24.11077 -22.57662 -21.97869 -21.18687 -20.16977 -19.68508 -19.25260 -17.93106 -17.66145 -17.00535 -16.31332 -15.97872 -15.77692 -15.40998 -15.23359 -14.67970 -14.50656 -14.27116 -14.22337 -13.99162 -13.91641 -13.60651 -13.38650 -13.28844 -13.01471 -12.82383 -12.48379 -12.21973 -12.05023 -11.93970 -11.75624 -11.61220 -11.59221 -11.50011 -11.11827 -11.10630 -11.00981 -10.87774 -10.80676 -10.48805 -10.28260 -10.18325 -9.97422 -9.55072 -9.35934 -8.92101 -8.55431 -8.20633 -8.01919 -6.46472 -3.87747 2.68765 2.90089 3.15716 3.22374 3.25859 3.52049 3.84432 3.92106 3.96045 4.19711 4.34029 4.49862 4.53083 4.62935 4.71509 4.82275 4.90525 4.94996 4.98544 5.08247 5.16050 5.19849 5.24550 5.31106 5.46933 5.52115 5.60383 5.61728 5.66171 5.66676 5.71261 5.73990 5.77647 5.80104 5.81031 5.91867 5.93447 5.94517 6.10381 6.15600 6.18965 6.49695 6.86110 7.04622 7.45416 7.49915 7.68359 8.00124 8.34304 8.55207 9.12300 9.48595 9.99328 10.70999 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007943 B = 0.003311 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.154535 B = 8454.203867 C =11304.976465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.144 4.144 7 C 0.066 3.934 8 H 0.094 0.906 9 C 0.512 3.488 10 O -0.534 6.534 11 N -0.708 5.708 12 C 0.173 3.827 13 C 0.036 3.964 14 N -0.628 5.628 15 C 0.053 3.947 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.900 5.900 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.169 4.169 28 C -0.204 4.204 29 O -0.348 6.348 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.415 0.585 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.354 0.646 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.273 0.727 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.291 -9.243 -7.176 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.019 3.981 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.182 4.182 7 C 0.005 3.995 8 H 0.111 0.889 9 C 0.297 3.703 10 O -0.410 6.410 11 N -0.363 5.363 12 C 0.048 3.952 13 C -0.057 4.057 14 N -0.260 5.260 15 C -0.079 4.079 16 C 0.226 3.774 17 O -0.469 6.469 18 N -0.198 5.198 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.541 5.541 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.207 4.207 28 C -0.244 4.244 29 O -0.266 6.266 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.252 0.748 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.174 0.826 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.123 -9.795 -6.745 17.710 hybrid contribution 1.471 0.960 0.176 1.765 sum -11.652 -8.835 -6.570 16.031 Atomic orbital electron populations 1.21712 0.95320 1.01211 1.02460 1.21907 0.96990 0.95692 1.02371 1.22879 0.94483 0.93404 0.87354 0.90071 1.23182 0.94870 0.99321 1.01335 1.23233 0.99141 1.00262 0.95546 1.22769 0.86722 0.94433 0.95567 0.88870 1.20426 0.83819 0.86911 0.79132 1.90698 1.26812 1.61166 1.62304 1.45710 1.19217 1.23138 1.48226 1.20660 0.93307 0.85710 0.95499 1.21904 0.92582 0.99958 0.91302 1.59709 1.03585 1.48465 1.14211 1.21661 0.98554 0.93458 0.94242 1.19748 0.86969 0.86670 0.84021 1.90518 1.61362 1.25280 1.69707 1.41856 1.27602 1.22683 1.27651 1.19634 1.05067 1.07985 1.10361 0.87965 1.25270 0.99373 0.95604 0.97609 1.69605 1.41172 1.14001 1.29347 0.85927 0.81081 0.78368 0.78903 1.19910 1.20955 1.19857 1.23321 1.03877 1.00467 0.92988 1.23540 1.03963 0.91491 1.05382 1.88525 1.27523 1.77752 1.32848 0.91906 0.93048 0.92873 0.91484 0.90998 0.89521 0.90029 0.88338 0.89632 0.74764 0.91074 0.91196 0.82550 0.93528 0.89612 0.77474 0.91751 0.88319 0.88057 0.88270 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.82 37.16 0.36 -0.99 16 2 C -0.13 -1.18 5.50 -26.73 -0.15 -1.33 16 3 C 0.08 0.83 3.52 -26.01 -0.09 0.74 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.15 -1.48 6.54 -24.78 -0.16 -1.64 16 6 C -0.14 -1.71 6.56 -24.48 -0.16 -1.87 16 7 C 0.07 0.83 3.86 -26.85 -0.10 0.73 16 8 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 9 C 0.51 7.59 7.17 -10.99 -0.08 7.51 16 10 O -0.53 -9.95 16.55 -13.77 -0.23 -10.17 16 11 N -0.71 -9.16 5.40 -60.29 -0.33 -9.48 16 12 C 0.17 2.12 5.73 -4.04 -0.02 2.09 16 13 C 0.04 0.40 2.12 -131.60 -0.28 0.12 16 14 N -0.63 -8.80 5.16 -101.22 -0.52 -9.33 16 15 C 0.05 0.87 5.95 -4.98 -0.03 0.84 16 16 C 0.44 9.76 7.83 -10.98 -0.09 9.67 16 17 O -0.58 -14.72 15.89 5.55 0.09 -14.64 16 18 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 19 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 20 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 21 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 22 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 23 Si 0.93 20.58 29.55 -169.99 -5.02 15.55 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 C -0.17 -1.55 9.87 -26.73 -0.26 -1.82 16 28 C -0.20 -2.00 9.67 -26.73 -0.26 -2.26 16 29 O -0.35 -4.87 9.89 -54.55 -0.54 -5.41 16 30 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.69 7.85 -51.93 -0.41 0.29 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 39 H 0.42 5.20 7.75 -40.82 -0.32 4.88 16 40 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 41 H 0.07 0.80 7.90 -51.93 -0.41 0.39 16 42 H 0.35 5.07 8.39 -39.29 -0.33 4.74 16 43 H 0.05 0.71 7.64 -51.93 -0.40 0.31 16 44 H 0.09 1.39 8.00 -51.93 -0.42 0.97 16 45 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 47 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 48 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 49 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 LS Contribution 413.68 15.07 6.23 6.23 Total: -1.00 -32.16 413.68 -9.62 -41.78 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -8.41 Total: 18.51 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.56 Total: 4.05 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.18 Total: -55.92 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.68 Total: -30.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.16 -9.62 -41.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723520345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.645 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds