Wall clock time and date at job start Tue Mar 31 2020 23:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46901 * 2 1 4 4 H 1.08991 * 109.82431 * 54.43671 * 3 2 1 5 5 C 1.54381 * 109.82755 * 175.41657 * 3 2 1 6 6 C 1.55306 * 102.25562 * 140.87270 * 5 3 2 7 7 C 1.54952 * 100.93685 * 325.86319 * 6 5 3 8 8 H 1.09003 * 110.39272 * 277.48754 * 7 6 5 9 9 C 1.50700 * 110.30504 * 155.35955 * 7 6 5 10 10 O 1.21285 * 120.00149 * 247.83189 * 9 7 6 11 11 N 1.34772 * 119.99930 * 67.83549 * 9 7 6 12 12 C 1.46499 * 120.00091 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47512 * 174.86694 * 12 11 9 14 14 N 1.46903 * 115.54620 * 325.03272 * 13 12 11 15 15 C 1.46898 * 110.99861 * 279.55899 * 14 13 12 16 16 C 1.50704 * 109.46669 * 174.70480 * 15 14 13 17 17 O 1.21292 * 120.00507 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99787 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00014 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00277 * 359.97438 * 19 18 16 21 21 C 1.38958 * 120.00011 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99726 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99749 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47161 * 59.99999 * 23 21 19 25 25 H 1.48503 * 109.46787 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47601 * 299.99440 * 23 21 19 27 27 C 1.52998 * 117.51981 * 110.73324 * 13 12 11 28 28 C 1.52997 * 60.00187 * 107.48304 * 27 13 12 29 29 O 1.43239 * 109.83010 * 293.54662 * 3 2 1 30 30 H 1.09002 * 109.47157 * 60.00093 * 1 2 3 31 31 H 1.09007 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47102 * 299.99813 * 1 2 3 33 33 H 1.09003 * 109.46774 * 240.00117 * 2 1 3 34 34 H 1.08997 * 109.47057 * 120.00394 * 2 1 3 35 35 H 1.08999 * 110.84631 * 259.06112 * 5 3 2 36 36 H 1.09004 * 110.85382 * 22.47130 * 5 3 2 37 37 H 1.08998 * 111.12555 * 207.94582 * 6 5 3 38 38 H 1.09000 * 111.12409 * 83.78028 * 6 5 3 39 39 H 0.97007 * 120.00257 * 359.97438 * 11 9 7 40 40 H 1.09003 * 109.47393 * 54.86673 * 12 11 9 41 41 H 1.08997 * 109.47163 * 294.86724 * 12 11 9 42 42 H 1.00903 * 110.99449 * 155.60365 * 14 13 12 43 43 H 1.09002 * 109.47298 * 294.70355 * 15 14 13 44 44 H 1.08995 * 109.47217 * 54.70672 * 15 14 13 45 45 H 0.97004 * 120.00244 * 359.97438 * 18 16 15 46 46 H 0.97003 * 119.99525 * 180.02562 * 22 21 19 47 47 H 1.08997 * 117.50127 * 214.97344 * 27 13 12 48 48 H 1.09003 * 117.49645 * 359.97438 * 27 13 12 49 49 H 1.09002 * 117.49899 * 252.51271 * 28 27 13 50 50 H 1.08995 * 117.52050 * 107.47605 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 0.8341 5 6 3.5794 1.4538 0.1161 6 6 3.9741 2.6075 -0.8457 7 6 2.8861 2.4636 -1.9396 8 1 3.1673 1.6914 -2.6558 9 6 2.6765 3.7787 -2.6450 10 8 1.6318 4.3797 -2.5096 11 7 3.6499 4.2870 -3.4263 12 6 3.4460 5.5652 -4.1124 13 6 4.7378 5.9746 -4.8228 14 7 5.9827 5.6124 -4.1322 15 6 6.2910 6.5730 -3.0644 16 6 7.4984 6.1000 -2.2965 17 8 8.0483 5.0648 -2.6084 18 7 7.9678 6.8278 -1.2638 19 6 9.0664 6.3978 -0.5656 20 1 9.5556 5.4757 -0.8427 21 6 9.5501 7.1479 0.4995 22 7 8.9546 8.2697 0.8370 23 14 11.0466 6.5616 1.4513 24 1 12.2075 6.4544 0.5314 25 1 11.3587 7.5329 2.5303 26 1 10.7638 5.2317 2.0484 27 6 4.7437 5.9436 -6.3525 28 6 4.7242 7.2838 -5.6146 29 8 1.6944 2.0801 -1.2353 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8898 1.6764 1.1369 36 1 4.0005 0.5053 -0.2174 37 1 4.9702 2.4507 -1.2594 38 1 3.9052 3.5748 -0.3480 39 1 4.4857 3.8065 -3.5343 40 1 3.1740 6.3293 -3.3841 41 1 2.6459 5.4606 -4.8451 42 1 6.7493 5.5380 -4.7841 43 1 6.4986 7.5492 -3.5026 44 1 5.4389 6.6516 -2.3893 45 1 7.5287 7.6562 -1.0151 46 1 9.2925 8.7934 1.5803 47 1 5.6713 5.6545 -6.8464 48 1 3.8272 5.6311 -6.8530 49 1 3.7949 7.8532 -5.6297 50 1 5.6389 7.8765 -5.6226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723520345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:41 Heat of formation + Delta-G solvation = -122.130002 kcal Electronic energy + Delta-G solvation = -30155.905463 eV Core-core repulsion = 25989.532818 eV Total energy + Delta-G solvation = -4166.372645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.44007 -40.46636 -39.76845 -39.01659 -35.98335 -35.27273 -34.49551 -33.89270 -33.17634 -33.13209 -30.20790 -28.29220 -27.72061 -25.89019 -25.03286 -23.38528 -22.86339 -22.05849 -21.26912 -21.02167 -20.62921 -19.87749 -18.68069 -18.12176 -17.60627 -17.05468 -16.91490 -16.76921 -16.39178 -16.30044 -15.85298 -15.64413 -15.37013 -15.15343 -14.90157 -14.76858 -14.55049 -14.13653 -14.03901 -13.91181 -13.89204 -13.55032 -13.48588 -13.04016 -12.92987 -12.83895 -12.79913 -12.42063 -12.41899 -12.37324 -12.13258 -11.93107 -11.84888 -11.79910 -11.61462 -11.47797 -11.11536 -11.02279 -10.41690 -10.29488 -10.02196 -10.00444 -9.39532 -8.45608 -5.94225 1.40164 1.42373 1.52914 1.53423 1.88828 2.06208 2.28125 2.60719 2.91812 2.98738 3.21993 3.41370 3.44137 3.63053 3.72849 3.75083 3.86498 3.94222 3.98794 4.08949 4.20739 4.29276 4.31090 4.41642 4.45691 4.51829 4.52764 4.63412 4.66444 4.75001 4.77107 4.80237 4.84801 4.92476 4.97350 4.99938 5.07865 5.11207 5.20629 5.31633 5.40794 5.42071 5.42904 5.84079 5.95337 6.05997 6.33610 6.58532 6.60049 7.13298 7.21811 7.57280 8.11321 8.71594 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007943 B = 0.003311 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.154535 B = 8454.203867 C =11304.976465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.069 3.931 4 H 0.074 0.926 5 C -0.141 4.141 6 C -0.143 4.143 7 C 0.068 3.932 8 H 0.119 0.881 9 C 0.507 3.493 10 O -0.579 6.579 11 N -0.698 5.698 12 C 0.172 3.828 13 C 0.021 3.979 14 N -0.632 5.632 15 C 0.071 3.929 16 C 0.443 3.557 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.330 4.330 20 H 0.083 0.917 21 C -0.014 4.014 22 N -0.923 5.923 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.270 1.270 27 C -0.149 4.149 28 C -0.197 4.197 29 O -0.374 6.374 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.418 0.582 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.354 0.646 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.394 0.606 46 H 0.276 0.724 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.111 0.889 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.986 -10.147 -7.840 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.012 3.988 4 H 0.091 0.909 5 C -0.179 4.179 6 C -0.181 4.181 7 C 0.007 3.993 8 H 0.137 0.863 9 C 0.294 3.706 10 O -0.459 6.459 11 N -0.352 5.352 12 C 0.048 3.952 13 C -0.071 4.071 14 N -0.264 5.264 15 C -0.061 4.061 16 C 0.230 3.770 17 O -0.501 6.501 18 N -0.212 5.212 19 C -0.459 4.459 20 H 0.101 0.899 21 C -0.214 4.214 22 N -0.564 5.564 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.199 1.199 26 H -0.195 1.195 27 C -0.186 4.186 28 C -0.236 4.236 29 O -0.293 6.293 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.256 0.744 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.174 0.826 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.227 0.773 46 H 0.086 0.914 47 H 0.124 0.876 48 H 0.136 0.864 49 H 0.129 0.871 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.811 -10.694 -7.436 18.269 hybrid contribution 1.329 1.245 0.307 1.846 sum -11.482 -9.450 -7.129 16.491 Atomic orbital electron populations 1.21708 0.95653 1.01915 1.01424 1.21896 0.96677 0.94315 1.03545 1.23054 0.95244 0.94390 0.86082 0.90850 1.23194 0.94090 0.99328 1.01261 1.23182 0.99110 0.99974 0.95825 1.22877 0.86583 0.93855 0.95988 0.86337 1.20908 0.83330 0.87473 0.78924 1.90667 1.28601 1.62580 1.64015 1.45707 1.18784 1.23221 1.47445 1.20721 0.94279 0.84884 0.95355 1.21792 0.90627 1.02204 0.92516 1.59608 1.04546 1.48073 1.14171 1.21418 0.95604 0.94557 0.94564 1.20703 0.87586 0.85628 0.83079 1.90489 1.62671 1.26571 1.70322 1.41946 1.27583 1.23165 1.28493 1.19630 1.06528 1.07983 1.11802 0.89943 1.26038 1.01799 0.95564 0.97974 1.69678 1.42280 1.14655 1.29766 0.85013 0.77726 0.78096 0.77693 1.19592 1.19886 1.19520 1.23420 1.05057 0.99260 0.90869 1.23586 1.04528 0.91323 1.04198 1.88503 1.28548 1.78257 1.34041 0.93982 0.91445 0.92889 0.91056 0.88922 0.88809 0.87934 0.87963 0.92062 0.74378 0.92678 0.90088 0.82559 0.91681 0.89298 0.77289 0.91417 0.87606 0.86406 0.87101 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.82 71.98 0.71 -1.88 16 2 C -0.13 -2.06 5.50 30.60 0.17 -1.89 16 3 C 0.07 1.47 3.52 31.06 0.11 1.58 16 4 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 5 C -0.14 -2.62 6.54 31.86 0.21 -2.41 16 6 C -0.14 -3.37 6.56 32.05 0.21 -3.16 16 7 C 0.07 1.69 3.86 30.52 0.12 1.81 16 8 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 9 C 0.51 15.23 7.17 87.66 0.63 15.85 16 10 O -0.58 -22.22 16.55 15.43 0.26 -21.96 16 11 N -0.70 -17.82 5.40 -463.06 -2.50 -20.32 16 12 C 0.17 4.07 5.73 86.38 0.50 4.57 16 13 C 0.02 0.44 2.12 3.53 0.01 0.45 16 14 N -0.63 -16.99 5.16 -474.14 -2.45 -19.44 16 15 C 0.07 2.27 5.95 85.56 0.51 2.78 16 16 C 0.44 19.73 7.83 87.66 0.69 20.42 16 17 O -0.61 -31.26 15.89 -3.07 -0.05 -31.31 16 18 N -0.57 -28.51 5.29 -306.98 -1.62 -30.13 16 19 C -0.33 -18.12 9.68 84.04 0.81 -17.31 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 22 N -0.92 -49.41 13.05 21.67 0.28 -49.12 16 23 Si 0.99 41.97 29.55 68.60 2.03 43.99 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 C -0.15 -2.30 9.87 30.59 0.30 -2.00 16 28 C -0.20 -3.38 9.67 30.59 0.30 -3.08 16 29 O -0.37 -10.53 9.89 -130.50 -1.29 -11.82 16 30 H 0.04 0.89 7.88 -2.39 -0.02 0.87 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 1.49 7.85 -2.38 -0.02 1.47 16 37 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 1.72 8.05 -2.39 -0.02 1.70 16 39 H 0.42 10.19 7.75 -92.70 -0.72 9.47 16 40 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 41 H 0.08 1.75 7.90 -2.39 -0.02 1.73 16 42 H 0.35 9.65 8.39 -89.69 -0.75 8.90 16 43 H 0.07 1.88 7.64 -2.39 -0.02 1.86 16 44 H 0.09 2.85 8.00 -2.39 -0.02 2.83 16 45 H 0.39 18.95 7.90 -92.71 -0.73 18.22 16 46 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 47 H 0.11 1.55 8.07 -2.39 -0.02 1.53 16 48 H 0.12 1.49 8.05 -2.39 -0.02 1.47 16 49 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.10 1.74 7.88 -2.39 -0.02 1.72 16 Total: -1.00 -70.64 413.68 -0.85 -71.49 By element: Atomic # 1 Polarization: 54.41 SS G_CDS: -1.24 Total: 53.17 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 5.73 Total: 15.45 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -6.29 Total: -119.01 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -1.08 Total: -65.09 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -70.64 -0.85 -71.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723520345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.639 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds