Wall clock time and date at job start Tue Mar 31 2020 23:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50700 * 120.00163 * 2 1 4 4 C 1.33000 * 119.99992 * 179.97438 * 2 1 3 5 5 C 1.47102 * 120.00136 * 185.80877 * 4 2 1 6 6 O 1.21619 * 119.99954 * 5.66640 * 5 4 2 7 7 N 1.34779 * 120.00183 * 185.66184 * 5 4 2 8 8 C 1.46497 * 120.00015 * 174.97037 * 7 5 4 9 9 C 1.52994 * 109.50326 * 63.94915 * 8 7 5 10 10 O 1.42898 * 109.47122 * 57.23424 * 9 8 7 11 11 C 1.53116 * 109.50157 * 184.07116 * 8 7 5 12 12 C 1.53121 * 109.16387 * 62.28854 * 11 8 7 13 13 C 1.53030 * 109.28003 * 57.65023 * 12 11 8 14 14 N 1.46848 * 109.52451 * 300.82591 * 13 12 11 15 15 C 1.46908 * 110.99903 * 185.83745 * 14 13 12 16 16 C 1.50701 * 109.46937 * 65.78848 * 15 14 13 17 17 O 1.21296 * 120.00039 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99965 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99977 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00053 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99970 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99802 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99946 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47211 * 90.00241 * 23 21 19 25 25 H 1.48509 * 109.47024 * 210.00035 * 23 21 19 26 26 H 1.48499 * 109.47344 * 330.00191 * 23 21 19 27 27 C 1.46839 * 111.19979 * 61.74323 * 14 13 12 28 28 H 1.09008 * 109.46560 * 90.00356 * 1 2 3 29 29 H 1.09000 * 109.46942 * 209.99744 * 1 2 3 30 30 H 1.08994 * 109.46870 * 330.00236 * 1 2 3 31 31 H 1.08995 * 109.46994 * 354.77085 * 3 2 1 32 32 H 1.08993 * 109.47140 * 114.77327 * 3 2 1 33 33 H 1.09005 * 109.46948 * 234.77332 * 3 2 1 34 34 H 1.07995 * 119.99834 * 5.81673 * 4 2 1 35 35 H 0.97001 * 119.99623 * 354.97637 * 7 5 4 36 36 H 1.09004 * 109.47114 * 177.23214 * 9 8 7 37 37 H 1.09002 * 109.47629 * 297.23161 * 9 8 7 38 38 H 0.96699 * 113.99950 * 180.02562 * 10 9 8 39 39 H 1.09005 * 109.51791 * 182.19109 * 11 8 7 40 40 H 1.08994 * 109.52170 * 302.37628 * 11 8 7 41 41 H 1.09001 * 109.49793 * 297.71032 * 12 11 8 42 42 H 1.09003 * 109.50125 * 177.59717 * 12 11 8 43 43 H 1.08999 * 109.46170 * 180.80570 * 13 12 11 44 44 H 1.08999 * 109.45165 * 60.83307 * 13 12 11 45 45 H 1.08994 * 109.46717 * 185.78455 * 15 14 13 46 46 H 1.09000 * 109.47082 * 305.79351 * 15 14 13 47 47 H 0.97004 * 120.00088 * 0.02562 * 18 16 15 48 48 H 0.97003 * 119.99812 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.46347 * 178.24608 * 27 14 13 50 50 H 1.08995 * 109.45900 * 58.26802 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 3.6374 -1.1551 0.1294 6 8 4.2317 -0.1148 0.3388 7 7 4.3213 -2.3108 0.0157 8 6 5.7862 -2.2999 0.0338 9 6 6.2765 -1.8019 1.3948 10 8 5.7416 -2.6328 2.4270 11 6 6.3110 -3.7171 -0.2124 12 6 5.8654 -4.1840 -1.6009 13 6 6.3807 -3.2006 -2.6541 14 7 5.8502 -1.8601 -2.3751 15 6 6.2112 -0.9182 -3.4432 16 6 5.5247 -1.3224 -4.7225 17 8 4.8051 -2.2986 -4.7424 18 7 5.7095 -0.5985 -5.8442 19 6 5.0854 -0.9664 -7.0081 20 1 4.4454 -1.8361 -7.0260 21 6 5.2764 -0.2204 -8.1647 22 7 6.0556 0.8376 -8.1429 23 14 4.4266 -0.7222 -9.7507 24 1 3.1030 -0.0543 -9.8358 25 1 5.2616 -0.3158 -10.9096 26 1 4.2397 -2.1952 -9.7676 27 6 6.3038 -1.3711 -1.0670 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.5560 2.1314 -0.0937 32 1 2.8151 1.4044 0.9330 33 1 2.9556 1.3233 -0.8395 34 1 1.6362 -2.0847 -0.0939 35 1 3.8436 -3.1498 -0.0783 36 1 7.3654 -1.8405 1.4251 37 1 5.9450 -0.7747 1.5469 38 1 6.0112 -2.3747 3.3190 39 1 7.3998 -3.7164 -0.1603 40 1 5.9096 -4.3907 0.5447 41 1 4.7767 -4.2218 -1.6400 42 1 6.2718 -5.1758 -1.7991 43 1 6.0530 -3.5225 -3.6426 44 1 7.4699 -3.1738 -2.6235 45 1 5.8955 0.0868 -3.1633 46 1 7.2911 -0.9323 -3.5903 47 1 6.2847 0.1825 -5.8282 48 1 6.1892 1.3582 -8.9505 49 1 5.9202 -0.3642 -0.9026 50 1 7.3934 -1.3529 -1.0441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724633232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:35 Heat of formation + Delta-G solvation = -126.293249 kcal Electronic energy + Delta-G solvation = -31418.462795 eV Core-core repulsion = 27251.909618 eV Total energy + Delta-G solvation = -4166.553177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.66117 -40.29534 -39.21102 -37.53742 -36.30401 -35.95942 -35.24015 -33.57150 -33.16407 -31.82924 -29.11072 -28.67699 -28.44284 -26.77961 -26.51991 -24.15064 -23.23704 -22.22460 -20.96390 -20.16212 -19.86754 -19.57467 -18.33608 -17.82460 -17.67733 -16.86086 -16.63344 -16.46367 -16.29033 -15.97213 -15.72869 -15.41778 -15.33844 -15.12972 -14.98996 -14.60341 -14.46756 -14.21995 -14.17297 -13.66146 -13.50719 -13.43734 -13.37404 -13.19450 -13.12341 -12.99719 -12.81162 -12.61490 -12.60395 -12.41941 -12.35537 -12.12457 -11.82990 -11.65903 -11.41454 -11.34057 -11.00136 -10.27751 -10.22102 -10.04158 -9.99342 -9.61684 -9.16085 -8.46236 -5.94980 0.53760 1.37398 1.40671 1.53669 2.04772 2.26086 2.34802 2.53863 2.70165 3.20057 3.34143 3.41145 3.67690 3.84261 3.94560 3.98882 4.02715 4.25148 4.29418 4.33885 4.37216 4.45004 4.46908 4.50162 4.55648 4.60250 4.64058 4.70994 4.72802 4.78661 4.82791 4.89439 4.94691 5.00965 5.05559 5.08240 5.20778 5.26200 5.38887 5.41024 5.60142 5.67738 5.75525 5.89099 6.09977 6.25825 6.60502 6.81385 6.89827 7.12847 7.49228 7.55968 8.11599 8.71433 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.003394 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.302712 B = 8248.904187 C = 9802.086925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.039 4.039 3 C -0.109 4.109 4 C -0.250 4.250 5 C 0.550 3.450 6 O -0.574 6.574 7 N -0.689 5.689 8 C 0.190 3.810 9 C 0.075 3.925 10 O -0.575 6.575 11 C -0.108 4.108 12 C -0.106 4.106 13 C 0.051 3.949 14 N -0.517 5.517 15 C 0.060 3.940 16 C 0.445 3.555 17 O -0.607 6.607 18 N -0.575 5.575 19 C -0.330 4.330 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.047 3.953 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.138 0.862 35 H 0.403 0.597 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.394 0.606 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.394 0.606 48 H 0.277 0.723 49 H 0.081 0.919 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 -4.256 21.642 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.041 4.041 3 C -0.166 4.166 4 C -0.270 4.270 5 C 0.341 3.659 6 O -0.457 6.457 7 N -0.338 5.338 8 C 0.103 3.897 9 C -0.005 4.005 10 O -0.382 6.382 11 C -0.146 4.146 12 C -0.144 4.144 13 C -0.077 4.077 14 N -0.242 5.242 15 C -0.072 4.072 16 C 0.232 3.768 17 O -0.493 6.493 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.564 5.564 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.082 4.082 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.156 0.844 35 H 0.239 0.761 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.243 0.757 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.111 0.889 46 H 0.082 0.918 47 H 0.227 0.773 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.510 -4.412 21.113 21.715 hybrid contribution 0.984 0.410 -0.840 1.358 sum -1.525 -4.002 20.273 20.720 Atomic orbital electron populations 1.21049 0.89027 1.04397 1.03428 1.22815 0.97446 0.94834 0.89024 1.20909 0.99009 0.94073 1.02563 1.22543 0.93020 0.99948 1.11512 1.18676 0.88500 0.83243 0.75505 1.90635 1.71363 1.32539 1.51203 1.45511 1.05966 1.09133 1.73223 1.20317 0.80595 0.96379 0.92420 1.22386 0.97225 0.93954 0.86887 1.86384 1.76099 1.57043 1.18695 1.21773 1.01821 0.93962 0.97056 1.21511 1.01303 0.98131 0.93461 1.22226 0.96075 0.88884 1.00510 1.61315 1.60679 1.01864 1.00342 1.21651 0.98206 0.97329 0.89967 1.20605 0.85509 0.85176 0.85474 1.90449 1.42946 1.30077 1.85844 1.41933 1.43794 1.27293 1.08243 1.19658 1.26615 1.12217 0.87504 0.90217 1.26049 0.97607 0.95446 1.02233 1.69687 1.38084 1.17575 1.31017 0.84928 0.78084 0.78502 0.76822 1.19704 1.19551 1.19612 1.22424 0.97903 0.99822 0.88031 0.90183 0.89878 0.89587 0.91269 0.90606 0.93126 0.84424 0.76126 0.91502 0.93171 0.75729 0.89525 0.89341 0.92180 0.89690 0.91944 0.94963 0.88904 0.91785 0.77271 0.91358 0.90096 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 9.97 71.24 0.71 -1.29 16 2 C -0.04 -0.93 6.11 -17.61 -0.11 -1.03 16 3 C -0.11 -2.79 8.33 71.24 0.59 -2.19 16 4 C -0.25 -6.38 9.63 23.43 0.23 -6.15 16 5 C 0.55 16.02 7.10 86.57 0.61 16.63 16 6 O -0.57 -18.79 9.47 -4.09 -0.04 -18.83 16 7 N -0.69 -17.66 4.43 -426.24 -1.89 -19.55 16 8 C 0.19 4.50 0.45 3.66 0.00 4.50 16 9 C 0.07 1.53 5.75 71.98 0.41 1.94 16 10 O -0.57 -10.49 12.97 -148.98 -1.93 -12.42 16 11 C -0.11 -2.19 4.67 30.67 0.14 -2.05 16 12 C -0.11 -2.63 5.91 30.64 0.18 -2.45 16 13 C 0.05 1.64 5.10 86.32 0.44 2.08 16 14 N -0.52 -17.78 4.25 -900.93 -3.83 -21.60 16 15 C 0.06 2.28 5.45 85.56 0.47 2.75 16 16 C 0.45 22.01 7.46 87.66 0.65 22.67 16 17 O -0.61 -33.85 13.90 -3.08 -0.04 -33.89 16 18 N -0.58 -30.53 5.29 -306.98 -1.62 -32.16 16 19 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 20 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 23 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 C 0.05 1.33 3.95 86.33 0.34 1.67 16 28 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.08 1.12 8.07 -2.39 -0.02 1.10 16 30 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 31 H 0.07 1.42 7.98 -2.39 -0.02 1.40 16 32 H 0.08 2.04 7.08 -2.39 -0.02 2.02 16 33 H 0.05 1.59 7.42 -2.38 -0.02 1.57 16 34 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 35 H 0.40 9.36 7.60 -92.71 -0.70 8.65 16 36 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.05 1.24 6.36 -2.39 -0.02 1.22 16 38 H 0.39 3.87 9.12 -74.06 -0.68 3.19 16 39 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.09 1.63 7.84 -2.39 -0.02 1.61 16 41 H 0.06 1.64 7.14 -2.39 -0.02 1.62 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 2.57 5.78 -2.39 -0.01 2.55 16 44 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 3.43 7.99 -2.39 -0.02 3.41 16 46 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 47 H 0.39 20.12 7.90 -92.71 -0.73 19.39 16 48 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 49 H 0.08 2.64 5.92 -2.39 -0.01 2.62 16 50 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -72.57 394.06 -2.22 -74.78 By element: Atomic # 1 Polarization: 51.31 SS G_CDS: -1.13 Total: 50.18 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 5.96 Total: 18.49 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -7.06 Total: -123.89 kcal Atomic # 8 Polarization: -63.13 SS G_CDS: -2.01 Total: -65.14 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.57 -2.22 -74.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724633232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.509 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds