Wall clock time and date at job start Wed Apr 1 2020 00:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47297 * 2 1 4 4 H 1.08994 * 109.46711 * 55.90498 * 3 2 1 5 5 C 1.50698 * 109.46989 * 175.90621 * 3 2 1 6 6 O 1.21281 * 120.00067 * 101.97621 * 5 3 2 7 7 N 1.34771 * 120.00164 * 281.97672 * 5 3 2 8 8 C 1.47157 * 120.98171 * 355.07125 * 7 5 3 9 9 C 1.53298 * 108.38164 * 129.48828 * 8 7 5 10 10 O 1.42955 * 109.22423 * 52.30514 * 9 8 7 11 11 C 1.42966 * 114.16698 * 297.41957 * 10 9 8 12 12 H 1.09001 * 109.55112 * 302.62821 * 11 10 9 13 13 C 1.52996 * 109.51177 * 182.50514 * 11 10 9 14 14 N 1.46495 * 109.47502 * 65.25159 * 13 11 10 15 15 C 1.36940 * 120.00421 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99831 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00377 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99788 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00226 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47155 * 60.00018 * 19 17 15 21 21 H 1.48499 * 109.47438 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47292 * 299.99626 * 19 17 15 23 23 C 1.47149 * 120.98670 * 175.09929 * 7 5 3 24 24 N 1.46503 * 109.46822 * 295.90515 * 3 2 1 25 25 C 1.46765 * 124.34596 * 119.72950 * 24 3 2 26 26 C 1.54659 * 105.38075 * 162.85371 * 25 24 3 27 27 C 1.54628 * 101.68749 * 25.76387 * 26 25 24 28 28 C 1.34415 * 124.35062 * 300.02416 * 24 3 2 29 29 O 1.21283 * 124.94236 * 0.39110 * 28 24 3 30 30 H 1.09004 * 109.46713 * 299.99787 * 1 2 3 31 31 H 1.08997 * 109.46871 * 60.00059 * 1 2 3 32 32 H 1.08994 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46862 * 239.99689 * 2 1 3 34 34 H 1.08997 * 109.46871 * 119.99940 * 2 1 3 35 35 H 1.08997 * 109.68032 * 9.76940 * 8 7 5 36 36 H 1.08996 * 109.68252 * 249.21405 * 8 7 5 37 37 H 1.09005 * 109.50840 * 172.22633 * 9 8 7 38 38 H 1.08999 * 109.51256 * 292.37897 * 9 8 7 39 39 H 1.09000 * 109.47036 * 185.25156 * 13 11 10 40 40 H 1.09006 * 109.47083 * 305.25162 * 13 11 10 41 41 H 0.97003 * 119.99961 * 359.97438 * 14 13 11 42 42 H 0.96997 * 120.00082 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.67797 * 350.23546 * 23 7 5 44 44 H 1.09003 * 109.68608 * 110.78441 * 23 7 5 45 45 H 1.09001 * 110.24249 * 281.97878 * 25 24 3 46 46 H 1.08998 * 110.24584 * 43.97903 * 25 24 3 47 47 H 1.09002 * 111.18891 * 267.59236 * 26 25 24 48 48 H 1.09003 * 110.85312 * 143.78730 * 26 25 24 49 49 H 1.08998 * 110.48656 * 216.31503 * 27 26 25 50 50 H 1.08997 * 110.48885 * 93.66421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6181 1.9770 0.8510 5 6 3.5437 1.4436 0.1014 6 8 4.2181 1.6375 -0.8878 7 7 4.1390 1.2292 1.2914 8 6 3.3446 1.0986 2.5232 9 6 3.7883 -0.1751 3.2518 10 8 5.2088 -0.1554 3.4116 11 6 5.9362 -0.1554 2.1808 12 1 5.6563 -1.0287 1.5916 13 6 7.4372 -0.1967 2.4744 14 7 7.7743 -1.4692 3.1172 15 6 9.0693 -1.7335 3.4755 16 1 9.8422 -1.0039 3.2838 17 6 9.3888 -2.9394 4.0840 18 7 8.4469 -3.8288 4.3172 19 14 11.1554 -3.3002 4.5721 20 1 11.6205 -2.2752 5.5408 21 1 11.2311 -4.6439 5.1996 22 1 12.0191 -3.2680 3.3645 23 6 5.6025 1.1193 1.3974 24 7 1.6340 2.1040 -1.2425 25 6 0.7834 3.2984 -1.3049 26 6 0.9888 3.8745 -2.7254 27 6 1.4004 2.6127 -3.5186 28 6 1.9878 1.6917 -2.4719 29 8 2.6778 0.7226 -2.7078 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2864 1.0280 2.2718 36 1 3.5135 1.9651 3.1625 37 1 3.3123 -0.2186 4.2315 38 1 3.4998 -1.0484 2.6669 39 1 7.9926 -0.1026 1.5412 40 1 7.7003 0.6267 3.1384 41 1 7.0800 -2.1243 3.2897 42 1 8.6700 -4.6713 4.7428 43 1 6.0395 1.0624 0.4004 44 1 5.9988 1.9878 1.9234 45 1 -0.2610 3.0260 -1.1527 46 1 1.0975 4.0248 -0.5553 47 1 1.7844 4.6195 -2.7371 48 1 0.0596 4.2928 -3.1125 49 1 2.1491 2.8622 -4.2705 50 1 0.5285 2.1537 -3.9846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724825301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:33 Heat of formation + Delta-G solvation = -85.202917 kcal Electronic energy + Delta-G solvation = -31130.924287 eV Core-core repulsion = 26966.152921 eV Total energy + Delta-G solvation = -4164.771367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.21495 -39.91233 -38.18210 -36.52525 -35.40263 -34.81710 -34.35804 -32.18235 -31.34050 -30.20507 -28.57840 -27.84919 -27.32744 -25.28875 -23.51398 -22.69397 -22.41284 -22.24787 -20.98774 -20.12389 -18.69862 -17.63838 -17.29603 -17.03198 -16.78534 -16.30846 -15.80321 -15.41032 -15.24089 -14.97459 -14.68532 -14.46718 -14.38967 -14.07953 -13.90305 -13.67588 -13.45581 -13.28072 -13.12248 -12.93314 -12.84892 -12.67505 -12.39045 -12.24279 -12.07859 -11.92150 -11.59953 -11.52959 -11.41675 -11.28643 -10.99526 -10.86837 -10.75348 -10.46327 -10.12279 -9.96491 -9.87109 -9.70912 -9.65055 -8.89111 -8.83108 -8.51870 -6.86106 -5.69620 -2.98313 2.30048 2.48036 2.65362 2.98678 3.49151 3.52720 3.54204 3.93209 3.99601 4.09330 4.23116 4.40794 4.49210 4.53808 4.60759 4.71727 4.72118 4.83573 4.88999 4.99549 5.02264 5.07616 5.12294 5.17285 5.30582 5.31874 5.34364 5.44111 5.47002 5.56947 5.59231 5.63002 5.66982 5.70615 5.74958 5.90262 5.92268 5.98214 6.17767 6.29610 6.36305 6.59666 6.72203 6.91908 7.23262 7.46744 7.74528 8.00565 8.16446 8.48541 9.60017 10.17095 10.53061 11.53233 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.002408 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.009910 B =11624.162185 C =11992.732585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.147 3.853 4 H 0.108 0.892 5 C 0.502 3.498 6 O -0.510 6.510 7 N -0.614 5.614 8 C 0.069 3.931 9 C 0.045 3.955 10 O -0.357 6.357 11 C 0.074 3.926 12 H 0.064 0.936 13 C 0.164 3.836 14 N -0.726 5.726 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.088 3.912 24 N -0.612 5.612 25 C 0.105 3.895 26 C -0.131 4.131 27 C -0.155 4.155 28 C 0.523 3.477 29 O -0.503 6.503 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.387 0.613 42 H 0.255 0.745 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.763 17.363 -9.950 31.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.040 3.960 4 H 0.126 0.874 5 C 0.288 3.712 6 O -0.383 6.383 7 N -0.350 5.350 8 C -0.055 4.055 9 C -0.033 4.033 10 O -0.275 6.275 11 C 0.015 3.985 12 H 0.082 0.918 13 C 0.036 3.964 14 N -0.371 5.371 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.035 4.035 24 N -0.348 5.348 25 C -0.018 4.018 26 C -0.168 4.168 27 C -0.195 4.195 28 C 0.310 3.690 29 O -0.376 6.376 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.221 0.779 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.108 0.892 49 H 0.119 0.881 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.724 16.923 -10.384 30.936 hybrid contribution 0.527 -0.349 0.344 0.719 sum -23.197 16.575 -10.039 30.226 Atomic orbital electron populations 1.21697 0.94378 1.02274 1.01738 1.21912 0.97095 0.93917 1.04751 1.20851 0.91789 0.95876 0.87477 0.87440 1.20843 0.90474 0.77076 0.82802 1.90757 1.65249 1.47015 1.35316 1.48140 1.07606 1.72423 1.06814 1.22581 0.95823 1.00503 0.86548 1.22912 0.83830 0.95377 1.01158 1.88161 1.15574 1.94538 1.29200 1.22805 0.94560 0.95693 0.85426 0.91814 1.20612 0.88021 0.91251 0.96564 1.42221 1.07755 1.15257 1.71840 1.19182 0.85486 1.00172 1.32182 0.91195 1.24743 0.97590 0.96884 1.01789 1.69667 1.31399 1.08529 1.48543 0.86245 0.84487 0.77075 0.78234 1.21277 1.21718 1.21274 1.22315 0.79200 0.99096 1.02841 1.47982 1.51642 1.29946 1.05262 1.22129 0.94565 0.86579 0.98540 1.22606 1.03130 0.97218 0.93882 1.22321 1.03001 0.95968 0.98205 1.20739 0.79275 0.85198 0.83773 1.90749 1.36014 1.27920 1.82894 0.92587 0.92627 0.92007 0.89425 0.90165 0.89306 0.90212 0.87735 0.92774 0.94660 0.95279 0.77918 0.93520 0.88162 0.90509 0.90889 0.90584 0.89921 0.89193 0.88099 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.79 37.16 0.36 -0.62 16 2 C -0.14 -1.34 5.04 -26.73 -0.13 -1.47 16 3 C 0.15 1.45 1.82 -69.08 -0.13 1.33 16 4 H 0.11 0.72 6.70 -51.93 -0.35 0.37 16 5 C 0.50 7.05 6.85 -10.99 -0.08 6.98 16 6 O -0.51 -9.39 13.66 -15.47 -0.21 -9.61 16 7 N -0.61 -8.03 3.02 -172.28 -0.52 -8.55 16 8 C 0.07 0.67 6.01 -3.53 -0.02 0.64 16 9 C 0.05 0.55 6.98 37.31 0.26 0.81 16 10 O -0.36 -6.24 10.33 -35.23 -0.36 -6.61 16 11 C 0.07 1.32 2.81 -26.58 -0.07 1.24 16 12 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 13 C 0.16 3.49 5.93 -4.05 -0.02 3.46 16 14 N -0.73 -19.43 5.55 -59.91 -0.33 -19.76 16 15 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -29.13 13.06 55.49 0.72 -28.40 16 19 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.09 1.34 5.91 -3.54 -0.02 1.32 16 24 N -0.61 -5.88 2.16 -166.05 -0.36 -6.24 16 25 C 0.10 0.55 7.31 -3.03 -0.02 0.53 16 26 C -0.13 -0.61 7.19 -25.00 -0.18 -0.79 16 27 C -0.15 -1.15 6.86 -26.74 -0.18 -1.34 16 28 C 0.52 6.43 6.72 -10.86 -0.07 6.36 16 29 O -0.50 -8.75 14.77 -15.48 -0.23 -8.98 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.39 7.72 -51.93 -0.40 -0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 1.16 6.65 -51.93 -0.35 0.82 16 34 H 0.08 0.73 7.06 -51.93 -0.37 0.36 16 35 H 0.09 0.58 4.98 -51.93 -0.26 0.32 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.39 10.97 7.67 -40.82 -0.31 10.65 16 42 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.10 1.66 7.12 -51.93 -0.37 1.30 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -38.92 394.30 -9.22 -48.14 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.29 Total: 5.21 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -0.56 Total: 10.84 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.49 Total: -62.95 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.80 Total: -25.20 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.92 -9.22 -48.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724825301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.063 kcal (2) G-P(sol) polarization free energy of solvation -38.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds