Wall clock time and date at job start Wed Apr 1 2020 00:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47297 * 2 1 4 4 H 1.08994 * 109.46711 * 55.90498 * 3 2 1 5 5 C 1.50698 * 109.46989 * 175.90621 * 3 2 1 6 6 O 1.21281 * 120.00067 * 101.97621 * 5 3 2 7 7 N 1.34771 * 120.00164 * 281.97672 * 5 3 2 8 8 C 1.47157 * 120.98171 * 355.07125 * 7 5 3 9 9 C 1.53298 * 108.38164 * 129.48828 * 8 7 5 10 10 O 1.42955 * 109.22423 * 52.30514 * 9 8 7 11 11 C 1.42966 * 114.16698 * 297.41957 * 10 9 8 12 12 H 1.09001 * 109.55112 * 302.62821 * 11 10 9 13 13 C 1.52996 * 109.51177 * 182.50514 * 11 10 9 14 14 N 1.46495 * 109.47502 * 65.25159 * 13 11 10 15 15 C 1.36940 * 120.00421 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99831 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00377 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99788 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00226 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47155 * 60.00018 * 19 17 15 21 21 H 1.48499 * 109.47438 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47292 * 299.99626 * 19 17 15 23 23 C 1.47149 * 120.98670 * 175.09929 * 7 5 3 24 24 N 1.46503 * 109.46822 * 295.90515 * 3 2 1 25 25 C 1.46765 * 124.34596 * 119.72950 * 24 3 2 26 26 C 1.54659 * 105.38075 * 162.85371 * 25 24 3 27 27 C 1.54628 * 101.68749 * 25.76387 * 26 25 24 28 28 C 1.34415 * 124.35062 * 300.02416 * 24 3 2 29 29 O 1.21283 * 124.94236 * 0.39110 * 28 24 3 30 30 H 1.09004 * 109.46713 * 299.99787 * 1 2 3 31 31 H 1.08997 * 109.46871 * 60.00059 * 1 2 3 32 32 H 1.08994 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46862 * 239.99689 * 2 1 3 34 34 H 1.08997 * 109.46871 * 119.99940 * 2 1 3 35 35 H 1.08997 * 109.68032 * 9.76940 * 8 7 5 36 36 H 1.08996 * 109.68252 * 249.21405 * 8 7 5 37 37 H 1.09005 * 109.50840 * 172.22633 * 9 8 7 38 38 H 1.08999 * 109.51256 * 292.37897 * 9 8 7 39 39 H 1.09000 * 109.47036 * 185.25156 * 13 11 10 40 40 H 1.09006 * 109.47083 * 305.25162 * 13 11 10 41 41 H 0.97003 * 119.99961 * 359.97438 * 14 13 11 42 42 H 0.96997 * 120.00082 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.67797 * 350.23546 * 23 7 5 44 44 H 1.09003 * 109.68608 * 110.78441 * 23 7 5 45 45 H 1.09001 * 110.24249 * 281.97878 * 25 24 3 46 46 H 1.08998 * 110.24584 * 43.97903 * 25 24 3 47 47 H 1.09002 * 111.18891 * 267.59236 * 26 25 24 48 48 H 1.09003 * 110.85312 * 143.78730 * 26 25 24 49 49 H 1.08998 * 110.48656 * 216.31503 * 27 26 25 50 50 H 1.08997 * 110.48885 * 93.66421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6181 1.9770 0.8510 5 6 3.5437 1.4436 0.1014 6 8 4.2181 1.6375 -0.8878 7 7 4.1390 1.2292 1.2914 8 6 3.3446 1.0986 2.5232 9 6 3.7883 -0.1751 3.2518 10 8 5.2088 -0.1554 3.4116 11 6 5.9362 -0.1554 2.1808 12 1 5.6563 -1.0287 1.5916 13 6 7.4372 -0.1967 2.4744 14 7 7.7743 -1.4692 3.1172 15 6 9.0693 -1.7335 3.4755 16 1 9.8422 -1.0039 3.2838 17 6 9.3888 -2.9394 4.0840 18 7 8.4469 -3.8288 4.3172 19 14 11.1554 -3.3002 4.5721 20 1 11.6205 -2.2752 5.5408 21 1 11.2311 -4.6439 5.1996 22 1 12.0191 -3.2680 3.3645 23 6 5.6025 1.1193 1.3974 24 7 1.6340 2.1040 -1.2425 25 6 0.7834 3.2984 -1.3049 26 6 0.9888 3.8745 -2.7254 27 6 1.4004 2.6127 -3.5186 28 6 1.9878 1.6917 -2.4719 29 8 2.6778 0.7226 -2.7078 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2864 1.0280 2.2718 36 1 3.5135 1.9651 3.1625 37 1 3.3123 -0.2186 4.2315 38 1 3.4998 -1.0484 2.6669 39 1 7.9926 -0.1026 1.5412 40 1 7.7003 0.6267 3.1384 41 1 7.0800 -2.1243 3.2897 42 1 8.6700 -4.6713 4.7428 43 1 6.0395 1.0624 0.4004 44 1 5.9988 1.9878 1.9234 45 1 -0.2610 3.0260 -1.1527 46 1 1.0975 4.0248 -0.5553 47 1 1.7844 4.6195 -2.7371 48 1 0.0596 4.2928 -3.1125 49 1 2.1491 2.8622 -4.2705 50 1 0.5285 2.1537 -3.9846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724825301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:31 Heat of formation + Delta-G solvation = -113.355464 kcal Electronic energy + Delta-G solvation = -31132.145074 eV Core-core repulsion = 26966.152921 eV Total energy + Delta-G solvation = -4165.992153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.10972 -40.91748 -39.38943 -37.41922 -36.74514 -36.07812 -35.57122 -33.93060 -31.96236 -31.92328 -29.60185 -28.57301 -28.37722 -26.76260 -24.97020 -24.03795 -23.26316 -22.72664 -22.48882 -21.12052 -19.62147 -19.26482 -18.52917 -18.07694 -17.66026 -17.40049 -16.99529 -16.63058 -16.45730 -16.11233 -15.96369 -15.62726 -15.39851 -15.21764 -15.05015 -14.64103 -14.54868 -14.40340 -14.29976 -14.10989 -13.84231 -13.61972 -13.44540 -13.28815 -13.03890 -12.96117 -12.76817 -12.65569 -12.42160 -12.31016 -12.16539 -12.10796 -12.00537 -11.90785 -11.84501 -11.66456 -11.25012 -10.98430 -10.95372 -10.60817 -9.70611 -9.64216 -9.04700 -7.96298 -5.26608 1.39742 1.43938 1.46254 1.50187 1.56155 1.84727 2.13384 2.54658 2.71005 3.23715 3.37140 3.45974 3.54125 3.64347 3.77017 3.83876 3.85544 3.90942 4.01511 4.09326 4.12662 4.15481 4.29639 4.32014 4.36200 4.40112 4.47080 4.59720 4.66724 4.68259 4.71730 4.74334 4.85350 4.88566 4.90081 5.01270 5.03839 5.09733 5.12342 5.20099 5.24055 5.32751 5.45256 5.56087 6.18646 6.19034 6.22070 6.25285 6.98218 7.30181 7.30619 8.03268 8.28907 9.27330 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.002408 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.009910 B =11624.162185 C =11992.732585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.150 3.850 4 H 0.155 0.845 5 C 0.494 3.506 6 O -0.563 6.563 7 N -0.614 5.614 8 C 0.072 3.928 9 C 0.035 3.965 10 O -0.384 6.384 11 C 0.091 3.909 12 H 0.040 0.960 13 C 0.161 3.839 14 N -0.740 5.740 15 C -0.251 4.251 16 H 0.078 0.922 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.980 3.020 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.278 1.278 23 C 0.099 3.901 24 N -0.611 5.611 25 C 0.098 3.902 26 C -0.120 4.120 27 C -0.152 4.152 28 C 0.503 3.497 29 O -0.572 6.572 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.047 0.953 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.375 0.625 42 H 0.252 0.748 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.125 0.875 49 H 0.091 0.909 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.453 19.970 -8.753 35.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.043 3.957 4 H 0.172 0.828 5 C 0.282 3.718 6 O -0.440 6.440 7 N -0.348 5.348 8 C -0.049 4.049 9 C -0.042 4.042 10 O -0.303 6.303 11 C 0.032 3.968 12 H 0.058 0.942 13 C 0.034 3.966 14 N -0.383 5.383 15 C -0.382 4.382 16 H 0.096 0.904 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.808 3.192 20 H -0.201 1.201 21 H -0.219 1.219 22 H -0.204 1.204 23 C -0.025 4.025 24 N -0.345 5.345 25 C -0.023 4.023 26 C -0.158 4.158 27 C -0.192 4.192 28 C 0.293 3.707 29 O -0.450 6.450 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.119 0.881 37 H 0.152 0.848 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.111 0.889 47 H 0.095 0.905 48 H 0.143 0.857 49 H 0.109 0.891 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.469 19.614 -9.162 34.194 hybrid contribution 1.309 -1.135 -0.031 1.733 sum -25.160 18.478 -9.192 32.542 Atomic orbital electron populations 1.21662 0.91597 1.02742 1.03241 1.21868 0.99338 0.93402 1.02735 1.21004 0.88598 0.96752 0.89384 0.82812 1.21758 0.92345 0.75732 0.82003 1.90737 1.66770 1.49419 1.37100 1.48258 1.06752 1.71754 1.08070 1.22818 0.97314 0.99817 0.84945 1.23282 0.81059 0.96621 1.03251 1.88097 1.18622 1.94800 1.28809 1.22384 0.92580 0.96090 0.85767 0.94177 1.20734 0.90831 0.89029 0.95991 1.42408 1.06860 1.16786 1.72246 1.19631 0.86647 1.00413 1.31518 0.90447 1.25653 1.02021 0.96835 1.02379 1.69839 1.33575 1.08867 1.49762 0.85127 0.79293 0.76726 0.78080 1.20083 1.21926 1.20379 1.21991 0.81326 0.98058 1.01164 1.48201 1.51196 1.30768 1.04336 1.22533 0.95370 0.85153 0.99272 1.22663 1.04558 0.95475 0.93067 1.22371 1.03170 0.96554 0.97141 1.21668 0.78479 0.84846 0.85740 1.90705 1.39155 1.30955 1.84171 0.89362 0.92666 0.92199 0.94050 0.89752 0.85274 0.88111 0.84789 0.93439 0.94483 0.94800 0.79364 0.93914 0.90330 0.89186 0.87729 0.88887 0.90463 0.85676 0.89057 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.79 71.98 0.70 -0.75 16 2 C -0.13 -2.47 5.04 30.60 0.15 -2.32 16 3 C 0.15 2.65 1.82 44.24 0.08 2.73 16 4 H 0.15 1.24 6.70 -2.39 -0.02 1.23 16 5 C 0.49 13.80 6.85 87.66 0.60 14.40 16 6 O -0.56 -21.84 13.66 17.08 0.23 -21.60 16 7 N -0.61 -15.55 3.02 -817.37 -2.47 -18.02 16 8 C 0.07 1.18 6.01 86.35 0.52 1.70 16 9 C 0.03 0.78 6.98 72.08 0.50 1.29 16 10 O -0.38 -13.42 10.33 -148.98 -1.54 -14.96 16 11 C 0.09 3.35 2.81 30.69 0.09 3.43 16 12 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 13 C 0.16 7.07 5.93 86.38 0.51 7.59 16 14 N -0.74 -40.82 5.55 -343.46 -1.91 -42.73 16 15 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 17 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 18 N -0.97 -61.93 13.06 21.65 0.28 -61.65 16 19 Si 0.98 47.82 29.55 68.60 2.03 49.85 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 23 C 0.10 3.07 5.91 86.35 0.51 3.58 16 24 N -0.61 -10.65 2.16 -797.84 -1.72 -12.38 16 25 C 0.10 0.63 7.31 86.89 0.64 1.27 16 26 C -0.12 -0.73 7.19 31.71 0.23 -0.50 16 27 C -0.15 -2.12 6.86 30.59 0.21 -1.91 16 28 C 0.50 12.62 6.72 87.90 0.59 13.21 16 29 O -0.57 -21.57 14.77 17.07 0.25 -21.32 16 30 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.05 0.61 7.72 -2.39 -0.02 0.59 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.04 1.17 6.65 -2.38 -0.02 1.15 16 34 H 0.08 1.42 7.06 -2.39 -0.02 1.40 16 35 H 0.13 1.05 4.98 -2.39 -0.01 1.04 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.37 22.11 7.67 -92.71 -0.71 21.40 16 42 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.08 2.79 7.12 -2.39 -0.02 2.77 16 44 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.09 0.35 8.14 -2.39 -0.02 0.34 16 47 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -92.31 394.30 2.03 -90.28 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.23 Total: 26.93 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 6.64 Total: 25.59 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -5.81 Total: -134.77 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -1.05 Total: -57.88 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -92.31 2.03 -90.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724825301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.071 kcal (2) G-P(sol) polarization free energy of solvation -92.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds