Wall clock time and date at job start Wed Apr 1 2020 00:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47026 * 2 1 4 4 H 1.09006 * 109.46999 * 305.37305 * 3 2 1 5 5 C 1.50697 * 109.47373 * 185.37191 * 3 2 1 6 6 O 1.21280 * 119.99888 * 264.97837 * 5 3 2 7 7 N 1.34782 * 120.00146 * 84.97472 * 5 3 2 8 8 C 1.47151 * 120.97989 * 354.97706 * 7 5 3 9 9 C 1.53298 * 108.38231 * 230.51309 * 8 7 5 10 10 O 1.42959 * 109.22105 * 307.69599 * 9 8 7 11 11 C 1.42969 * 114.16728 * 62.58622 * 10 9 8 12 12 H 1.08995 * 109.51156 * 57.33655 * 11 10 9 13 13 C 1.52997 * 109.51427 * 177.49634 * 11 10 9 14 14 N 1.46506 * 109.46995 * 299.99517 * 13 11 10 15 15 C 1.36928 * 119.99983 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00238 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00089 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99731 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00176 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47452 * 89.99599 * 19 17 15 21 21 H 1.48497 * 109.47112 * 209.99938 * 19 17 15 22 22 H 1.48497 * 109.47245 * 329.99742 * 19 17 15 23 23 C 1.47146 * 120.98109 * 174.95244 * 7 5 3 24 24 N 1.46498 * 109.46718 * 65.37098 * 3 2 1 25 25 C 1.46763 * 124.34851 * 239.99913 * 24 3 2 26 26 C 1.54480 * 105.47462 * 197.01901 * 25 24 3 27 27 C 1.54622 * 101.76409 * 334.58371 * 26 25 24 28 28 C 1.34413 * 124.35305 * 59.70704 * 24 3 2 29 29 O 1.21284 * 124.94352 * 359.56338 * 28 24 3 30 30 H 1.08997 * 109.47319 * 60.00241 * 1 2 3 31 31 H 1.09003 * 109.46514 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46921 * 299.99472 * 1 2 3 33 33 H 1.09006 * 109.47379 * 240.00663 * 2 1 3 34 34 H 1.08997 * 109.47319 * 119.99759 * 2 1 3 35 35 H 1.08991 * 109.68177 * 110.78816 * 8 7 5 36 36 H 1.09007 * 109.68007 * 350.23275 * 8 7 5 37 37 H 1.08994 * 109.50904 * 187.77258 * 9 8 7 38 38 H 1.09000 * 109.51200 * 67.61965 * 9 8 7 39 39 H 1.09004 * 109.47117 * 59.99364 * 13 11 10 40 40 H 1.08993 * 109.46991 * 179.97438 * 13 11 10 41 41 H 0.96995 * 119.99502 * 0.02562 * 14 13 11 42 42 H 0.97003 * 119.99576 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.68200 * 9.76552 * 23 7 5 44 44 H 1.09001 * 109.71279 * 249.23194 * 23 7 5 45 45 H 1.09003 * 110.24926 * 316.01990 * 25 24 3 46 46 H 1.09001 * 110.24730 * 78.01933 * 25 24 3 47 47 H 1.09002 * 110.97028 * 92.70640 * 26 25 24 48 48 H 1.08996 * 110.96995 * 216.42791 * 26 25 24 49 49 H 1.09003 * 110.48366 * 143.47308 * 27 26 25 50 50 H 1.08993 * 110.48830 * 266.11987 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6002 1.9834 -0.8380 5 6 3.5411 1.4447 -0.1330 6 8 4.2376 1.5049 0.8580 7 7 4.1097 1.3798 -1.3533 8 6 3.2904 1.1960 -2.5618 9 6 3.8819 0.0392 -3.3755 10 8 5.2765 0.2751 -3.5837 11 6 6.0484 0.3200 -2.3811 12 1 5.9224 -0.6133 -1.8325 13 6 7.5256 0.5142 -2.7290 14 7 7.9824 -0.6023 -3.5603 15 6 9.2796 -0.6453 -3.9964 16 1 9.9661 0.1442 -3.7280 17 6 9.7123 -1.7029 -4.7846 18 7 8.8754 -2.6642 -5.1130 19 14 11.4821 -1.7619 -5.3790 20 1 12.3142 -2.4867 -4.3853 21 1 11.5427 -2.4675 -6.6842 22 1 11.9966 -0.3782 -5.5400 23 6 5.5678 1.4912 -1.5165 24 7 1.6601 2.0947 1.2556 25 6 0.8157 3.2918 1.3444 26 6 1.0458 3.8541 2.7648 27 6 1.4747 2.5867 3.5398 28 6 2.0353 1.6704 2.4745 29 8 2.7251 0.6962 2.6890 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 3.3047 2.1087 -3.1573 36 1 2.2652 0.9584 -2.2777 37 1 3.3757 -0.0245 -4.3386 38 1 3.7481 -0.8951 -2.8304 39 1 7.6503 1.4490 -3.2756 40 1 8.1133 0.5489 -1.8117 41 1 7.3658 -1.3111 -3.8017 42 1 9.1778 -3.4035 -5.6634 43 1 6.0507 1.4491 -0.5402 44 1 5.8120 2.4337 -2.0064 45 1 1.1186 4.0236 0.5955 46 1 -0.2325 3.0250 1.2097 47 1 1.8412 4.5994 2.7652 48 1 0.1248 4.2692 3.1739 49 1 2.2390 2.8311 4.2775 50 1 0.6130 2.1239 4.0208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724825303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:35 Heat of formation + Delta-G solvation = -113.333418 kcal Electronic energy + Delta-G solvation = -31081.009599 eV Core-core repulsion = 26915.018402 eV Total energy + Delta-G solvation = -4165.991197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.09972 -40.91548 -39.38871 -37.41096 -36.72860 -36.05496 -35.58391 -33.92652 -31.96802 -31.92304 -29.60620 -28.56368 -28.38032 -26.75489 -24.95178 -24.06174 -23.24850 -22.71845 -22.46534 -21.12965 -19.61330 -19.26297 -18.52912 -18.05996 -17.64454 -17.40434 -16.98598 -16.66570 -16.41783 -16.08696 -15.93710 -15.67665 -15.38592 -15.18665 -15.04769 -14.65806 -14.56019 -14.36818 -14.28170 -14.11501 -13.84252 -13.63597 -13.43817 -13.28797 -13.03791 -12.94146 -12.80675 -12.64281 -12.42296 -12.29538 -12.17210 -12.07475 -12.00359 -11.90875 -11.84114 -11.64887 -11.23616 -10.99266 -10.95816 -10.58903 -9.73571 -9.59624 -9.03919 -7.95994 -5.26045 1.35048 1.45670 1.48774 1.49611 1.57444 1.84638 2.15151 2.54791 2.71273 3.22666 3.37438 3.47143 3.54984 3.64835 3.78740 3.84612 3.86218 3.91792 4.01517 4.08863 4.12739 4.16392 4.29894 4.31745 4.36381 4.41426 4.46971 4.59887 4.67192 4.68732 4.71844 4.74884 4.84756 4.88711 4.89964 5.01360 5.04022 5.09913 5.12751 5.21029 5.24003 5.33040 5.45713 5.56515 6.18923 6.19135 6.22365 6.26042 6.98987 7.31058 7.31197 8.04288 8.30013 9.27843 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.002376 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.803413 B =11781.426597 C =12222.046707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.150 3.850 4 H 0.153 0.847 5 C 0.493 3.507 6 O -0.561 6.561 7 N -0.614 5.614 8 C 0.073 3.927 9 C 0.035 3.965 10 O -0.384 6.384 11 C 0.090 3.910 12 H 0.039 0.961 13 C 0.161 3.839 14 N -0.740 5.740 15 C -0.249 4.249 16 H 0.078 0.922 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.979 3.021 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.267 1.267 23 C 0.098 3.902 24 N -0.612 5.612 25 C 0.097 3.903 26 C -0.120 4.120 27 C -0.152 4.152 28 C 0.502 3.498 29 O -0.567 6.567 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.037 0.963 41 H 0.375 0.625 42 H 0.252 0.748 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.125 0.875 49 H 0.092 0.908 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.708 16.817 11.336 35.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.174 4.174 3 C 0.044 3.956 4 H 0.170 0.830 5 C 0.281 3.719 6 O -0.438 6.438 7 N -0.349 5.349 8 C -0.049 4.049 9 C -0.042 4.042 10 O -0.303 6.303 11 C 0.031 3.969 12 H 0.057 0.943 13 C 0.034 3.966 14 N -0.382 5.382 15 C -0.380 4.380 16 H 0.096 0.904 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.808 3.192 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.192 1.192 23 C -0.026 4.026 24 N -0.346 5.346 25 C -0.023 4.023 26 C -0.158 4.158 27 C -0.192 4.192 28 C 0.291 3.709 29 O -0.445 6.445 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.207 0.793 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.122 0.878 47 H 0.095 0.905 48 H 0.143 0.857 49 H 0.110 0.890 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -27.729 16.440 11.733 34.305 hybrid contribution 1.383 -1.042 -0.108 1.736 sum -26.346 15.398 11.624 32.655 Atomic orbital electron populations 1.21664 0.91597 1.02768 1.03224 1.21872 0.99316 0.93431 1.02777 1.21011 0.88751 0.96934 0.88953 0.83011 1.21802 0.92483 0.75510 0.82143 1.90762 1.65330 1.49842 1.37875 1.48286 1.07040 1.72479 1.07088 1.22801 0.96059 1.00679 0.85321 1.23264 0.81592 0.96712 1.02610 1.88105 1.19646 1.92849 1.29655 1.22398 0.91743 0.96733 0.86061 0.94283 1.20749 0.90197 0.91525 0.94128 1.42392 1.09803 1.25216 1.60829 1.19670 0.88374 1.05350 1.24651 0.90434 1.25653 1.02438 0.97224 1.01636 1.69851 1.36082 1.13006 1.43107 0.85057 0.79337 0.77854 0.76992 1.21404 1.21907 1.19215 1.22009 0.81205 0.98833 1.00574 1.48216 1.51496 1.30578 1.04343 1.22491 0.95496 0.85153 0.99202 1.22631 1.04447 0.95487 0.93225 1.22367 1.03331 0.96554 0.96973 1.21676 0.78399 0.84955 0.85871 1.90712 1.38741 1.30482 1.84584 0.89451 0.92131 0.92641 0.89806 0.93854 0.87968 0.85427 0.84857 0.93649 0.94791 0.94533 0.79290 0.93945 0.90150 0.89003 0.88911 0.87806 0.90467 0.85679 0.88993 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.80 71.98 0.71 -0.69 16 2 C -0.14 -2.43 5.03 30.60 0.15 -2.27 16 3 C 0.15 2.64 1.80 44.25 0.08 2.72 16 4 H 0.15 1.25 6.77 -2.38 -0.02 1.23 16 5 C 0.49 13.70 6.86 87.66 0.60 14.30 16 6 O -0.56 -21.85 13.51 17.81 0.24 -21.61 16 7 N -0.61 -15.44 3.02 -817.34 -2.47 -17.91 16 8 C 0.07 1.19 6.13 86.36 0.53 1.72 16 9 C 0.04 0.81 6.98 72.08 0.50 1.32 16 10 O -0.38 -13.54 10.13 -148.98 -1.51 -15.05 16 11 C 0.09 3.30 2.87 30.69 0.09 3.39 16 12 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 13 C 0.16 7.04 5.96 86.38 0.51 7.56 16 14 N -0.74 -40.72 5.49 -343.45 -1.89 -42.61 16 15 C -0.25 -14.68 9.99 84.04 0.84 -13.84 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 17 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 18 N -0.97 -61.92 13.06 21.65 0.28 -61.64 16 19 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 C 0.10 3.00 5.94 86.36 0.51 3.51 16 24 N -0.61 -10.53 2.25 -798.19 -1.80 -12.32 16 25 C 0.10 0.62 7.30 86.83 0.63 1.26 16 26 C -0.12 -0.71 7.18 31.65 0.23 -0.48 16 27 C -0.15 -2.08 6.86 30.59 0.21 -1.87 16 28 C 0.50 12.40 6.78 87.90 0.60 12.99 16 29 O -0.57 -21.15 14.56 17.80 0.26 -20.89 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.59 7.76 -2.39 -0.02 0.57 16 33 H 0.08 1.37 7.11 -2.38 -0.02 1.35 16 34 H 0.04 1.20 6.59 -2.39 -0.02 1.18 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.13 1.10 4.93 -2.38 -0.01 1.09 16 37 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.38 22.16 7.54 -92.71 -0.70 21.46 16 42 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.08 2.80 7.06 -2.38 -0.02 2.78 16 44 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 49 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -92.13 393.94 2.05 -90.08 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.24 Total: 26.70 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 6.66 Total: 25.44 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -5.87 Total: -134.48 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -1.01 Total: -57.55 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -92.13 2.05 -90.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724825303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.257 kcal (2) G-P(sol) polarization free energy of solvation -92.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds