Wall clock time and date at job start Wed Apr 1 2020 00:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47313 * 2 1 4 4 H 1.09000 * 109.47108 * 54.67787 * 3 2 1 5 5 C 1.50702 * 109.47219 * 174.67439 * 3 2 1 6 6 O 1.21280 * 119.99737 * 100.98850 * 5 3 2 7 7 N 1.34779 * 119.99877 * 280.99719 * 5 3 2 8 8 C 1.47153 * 120.98339 * 4.74030 * 7 5 3 9 9 C 1.52876 * 108.60506 * 230.50261 * 8 7 5 10 10 O 1.42961 * 109.29884 * 307.93697 * 9 8 7 11 11 C 1.42964 * 114.17014 * 62.45047 * 10 9 8 12 12 H 1.09000 * 109.50531 * 57.34034 * 11 10 9 13 13 C 1.52994 * 109.55443 * 177.47175 * 11 10 9 14 14 N 1.46499 * 109.47059 * 299.77012 * 13 11 10 15 15 C 1.36936 * 120.00055 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00306 * 0.02562 * 15 14 13 17 17 C 1.38820 * 120.00103 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99773 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47078 * 60.00378 * 19 17 15 21 21 H 1.48496 * 109.47129 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47569 * 300.00519 * 19 17 15 23 23 C 1.47149 * 120.97826 * 185.02280 * 7 5 3 24 24 N 1.46492 * 109.47037 * 294.67393 * 3 2 1 25 25 C 1.46827 * 124.33363 * 119.93704 * 24 3 2 26 26 C 1.54480 * 105.44446 * 197.00023 * 25 24 3 27 27 C 1.54625 * 101.80011 * 334.62805 * 26 25 24 28 28 C 1.34419 * 124.35271 * 299.97688 * 24 3 2 29 29 O 1.21277 * 124.94109 * 359.61853 * 28 24 3 30 30 H 1.09004 * 109.47294 * 300.00050 * 1 2 3 31 31 H 1.09006 * 109.47047 * 59.99577 * 1 2 3 32 32 H 1.09000 * 109.47619 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47294 * 239.99950 * 2 1 3 34 34 H 1.08997 * 109.47234 * 120.00265 * 2 1 3 35 35 H 1.08997 * 109.68173 * 350.28292 * 8 7 5 36 36 H 1.09003 * 109.67915 * 110.83445 * 8 7 5 37 37 H 1.09006 * 109.58231 * 187.92099 * 9 8 7 38 38 H 1.09006 * 109.40761 * 67.84405 * 9 8 7 39 39 H 1.09004 * 109.47465 * 59.76929 * 13 11 10 40 40 H 1.08994 * 109.47060 * 179.77259 * 13 11 10 41 41 H 0.97005 * 120.00506 * 0.02562 * 14 13 11 42 42 H 0.96997 * 119.99552 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.68538 * 249.16077 * 23 7 5 44 44 H 1.09001 * 109.68576 * 9.71918 * 23 7 5 45 45 H 1.08994 * 110.23980 * 78.01471 * 25 24 3 46 46 H 1.09007 * 110.28064 * 316.00187 * 25 24 3 47 47 H 1.09002 * 110.96794 * 216.48914 * 26 25 24 48 48 H 1.09004 * 110.97188 * 92.76974 * 26 25 24 49 49 H 1.08995 * 110.48586 * 143.46064 * 27 26 25 50 50 H 1.09006 * 110.48236 * 266.10459 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 0.8385 5 6 3.5412 1.4445 0.1319 6 8 4.2357 1.6136 -0.8479 7 7 4.1119 1.2583 1.3386 8 6 3.2955 0.9486 2.5230 9 6 3.6863 1.9062 3.6488 10 8 5.1042 1.8715 3.8277 11 6 5.8489 2.3076 2.6878 12 1 5.5474 3.3208 2.4220 13 6 7.3434 2.2880 3.0144 14 7 7.6095 3.1890 4.1385 15 6 8.8865 3.3366 4.6103 16 1 9.6976 2.7890 4.1535 17 6 9.1387 4.1908 5.6751 18 7 8.1502 4.8585 6.2315 19 14 10.8806 4.3915 6.3192 20 1 11.7538 4.9046 5.2331 21 1 10.8820 5.3522 7.4516 22 1 11.3907 3.0771 6.7851 23 6 5.5693 1.3649 1.5117 24 7 1.6592 2.0951 -1.2550 25 6 0.8133 3.2920 -1.3426 26 6 0.3342 3.3507 -2.8101 27 6 1.4558 2.5761 -3.5401 28 6 2.0385 1.6746 -2.4741 29 8 2.7447 0.7122 -2.6883 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.2396 1.0757 2.2845 36 1 3.4802 -0.0786 2.8378 37 1 3.1951 1.6028 4.5734 38 1 3.3769 2.9181 3.3873 39 1 7.6437 1.2749 3.2820 40 1 7.9100 2.6168 2.1433 41 1 6.8810 3.6812 4.5486 42 1 8.3264 5.4551 6.9758 43 1 5.9869 0.3805 1.7230 44 1 6.0184 1.7676 0.6038 45 1 1.3933 4.1822 -1.0993 46 1 -0.0401 3.2016 -0.6705 47 1 0.2791 4.3810 -3.1616 48 1 -0.6264 2.8489 -2.9272 49 1 1.0416 1.9839 -4.3560 50 1 2.2138 3.2646 -3.9138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724825305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:39 Heat of formation + Delta-G solvation = -112.787179 kcal Electronic energy + Delta-G solvation = -31059.543835 eV Core-core repulsion = 26893.576324 eV Total energy + Delta-G solvation = -4165.967510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.10949 -40.92324 -39.39425 -37.41810 -36.73234 -36.06789 -35.54276 -33.92589 -31.98297 -31.93123 -29.60629 -28.56819 -28.37773 -26.73914 -24.93155 -24.10512 -23.23537 -22.71711 -22.40928 -21.11184 -19.68377 -19.24387 -18.66483 -18.06784 -17.54463 -17.23198 -16.98386 -16.71088 -16.38862 -16.18836 -15.98744 -15.76059 -15.26852 -15.24218 -15.03878 -14.64053 -14.47831 -14.40465 -14.24541 -14.04989 -13.81600 -13.72598 -13.46522 -13.31822 -12.99431 -12.94552 -12.76991 -12.65492 -12.42354 -12.29644 -12.17053 -12.09017 -12.02956 -11.88701 -11.80372 -11.64867 -11.22307 -10.97325 -10.94331 -10.61530 -9.70828 -9.64631 -9.02806 -7.95214 -5.24925 1.35439 1.46843 1.50697 1.52594 1.56747 1.80170 2.11526 2.55588 2.72772 3.22011 3.38074 3.47630 3.52974 3.65667 3.78677 3.83261 3.86358 3.93214 4.01707 4.06706 4.11805 4.21633 4.30573 4.33261 4.37455 4.40813 4.47948 4.60962 4.67392 4.68220 4.73431 4.76138 4.84747 4.87012 4.91018 5.02559 5.04525 5.10319 5.13995 5.20190 5.23332 5.34825 5.46461 5.55415 6.17641 6.20354 6.22402 6.27118 6.97696 7.29107 7.32517 8.05306 8.31538 9.28227 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020643 B = 0.002391 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.075107 B =11706.916294 C =12073.906634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.147 3.853 4 H 0.148 0.852 5 C 0.494 3.506 6 O -0.563 6.563 7 N -0.613 5.613 8 C 0.072 3.928 9 C 0.037 3.963 10 O -0.386 6.386 11 C 0.094 3.906 12 H 0.050 0.950 13 C 0.160 3.840 14 N -0.738 5.738 15 C -0.251 4.251 16 H 0.075 0.925 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.978 3.022 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.278 1.278 23 C 0.097 3.903 24 N -0.611 5.611 25 C 0.094 3.906 26 C -0.115 4.115 27 C -0.154 4.154 28 C 0.505 3.495 29 O -0.567 6.567 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.056 0.944 39 H 0.028 0.972 40 H 0.038 0.962 41 H 0.377 0.623 42 H 0.252 0.748 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.979 -5.701 -14.661 31.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C 0.040 3.960 4 H 0.165 0.835 5 C 0.282 3.718 6 O -0.440 6.440 7 N -0.348 5.348 8 C -0.050 4.050 9 C -0.040 4.040 10 O -0.305 6.305 11 C 0.034 3.966 12 H 0.068 0.932 13 C 0.033 3.967 14 N -0.381 5.381 15 C -0.383 4.383 16 H 0.093 0.907 17 C -0.267 4.267 18 N -0.618 5.618 19 Si 0.806 3.194 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.027 4.027 24 N -0.345 5.345 25 C -0.027 4.027 26 C -0.152 4.152 27 C -0.195 4.195 28 C 0.294 3.706 29 O -0.445 6.445 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.150 0.850 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.209 0.791 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.120 0.880 49 H 0.126 0.874 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.979 -6.236 -15.080 30.679 hybrid contribution 1.337 0.383 0.339 1.431 sum -24.642 -5.853 -14.741 29.305 Atomic orbital electron populations 1.21675 0.91835 1.02863 1.03074 1.21866 0.99132 0.92853 1.03177 1.21030 0.88872 0.97333 0.88743 0.83496 1.21764 0.92451 0.75614 0.81995 1.90742 1.65435 1.49788 1.38007 1.48245 1.07151 1.70467 1.08925 1.22737 0.97101 1.00848 0.84296 1.23203 0.81175 0.99157 1.00452 1.88111 1.18491 1.86929 1.36998 1.22375 0.92354 0.96020 0.85802 0.93208 1.20741 0.91416 0.93887 0.90667 1.42358 1.06648 1.51743 1.37344 1.19618 0.86760 1.20401 1.11503 0.90661 1.25611 1.01589 0.99953 0.99507 1.69828 1.32178 1.32752 1.27059 0.85160 0.79403 0.77403 0.77459 1.20364 1.21840 1.20358 1.22002 0.81575 1.00591 0.98517 1.48213 1.51643 1.30142 1.04512 1.22479 0.94587 0.85776 0.99837 1.22613 0.97719 1.02890 0.91992 1.22377 1.00490 0.99139 0.97455 1.21596 0.78721 0.84472 0.85764 1.90682 1.38446 1.30783 1.84636 0.89750 0.92826 0.91792 0.93577 0.89068 0.85129 0.89065 0.85024 0.92568 0.95361 0.94398 0.79127 0.93893 0.90169 0.89969 0.91176 0.86946 0.86907 0.88042 0.87421 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.80 71.98 0.71 -0.54 16 2 C -0.13 -2.10 5.05 30.59 0.15 -1.95 16 3 C 0.15 2.61 1.81 44.25 0.08 2.69 16 4 H 0.15 1.41 6.73 -2.39 -0.02 1.40 16 5 C 0.49 13.79 6.86 87.66 0.60 14.40 16 6 O -0.56 -21.76 13.60 17.42 0.24 -21.52 16 7 N -0.61 -15.60 3.03 -818.16 -2.48 -18.08 16 8 C 0.07 1.20 5.61 86.21 0.48 1.68 16 9 C 0.04 0.80 6.97 71.94 0.50 1.30 16 10 O -0.39 -13.26 10.14 -148.98 -1.51 -14.78 16 11 C 0.09 3.31 2.86 30.69 0.09 3.40 16 12 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 13 C 0.16 6.89 5.96 86.38 0.51 7.41 16 14 N -0.74 -39.79 5.50 -343.46 -1.89 -41.68 16 15 C -0.25 -14.64 9.99 84.04 0.84 -13.80 16 16 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 17 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 18 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 19 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 C 0.10 3.02 5.91 86.36 0.51 3.53 16 24 N -0.61 -11.04 2.22 -798.05 -1.77 -12.81 16 25 C 0.09 0.80 7.31 86.82 0.63 1.43 16 26 C -0.11 -0.64 7.18 31.65 0.23 -0.41 16 27 C -0.15 -2.21 6.86 30.59 0.21 -2.00 16 28 C 0.51 12.52 6.74 87.90 0.59 13.11 16 29 O -0.57 -20.52 14.71 17.42 0.26 -20.26 16 30 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.05 0.53 7.76 -2.38 -0.02 0.51 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.05 1.14 6.64 -2.38 -0.02 1.13 16 34 H 0.09 1.20 6.80 -2.39 -0.02 1.18 16 35 H 0.13 1.08 5.15 -2.39 -0.01 1.07 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.38 21.60 7.55 -92.70 -0.70 20.89 16 42 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.08 2.84 7.12 -2.39 -0.02 2.82 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 47 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 49 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -89.41 393.56 2.01 -87.40 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.24 Total: 26.47 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 6.61 Total: 26.32 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -5.85 Total: -132.82 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -1.02 Total: -56.56 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -89.41 2.01 -87.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724825305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.385 kcal (2) G-P(sol) polarization free energy of solvation -89.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds