Wall clock time and date at job start Tue Mar 31 2020 23:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32987 * 120.00172 * 2 1 4 4 C 1.47109 * 119.99863 * 4.15100 * 3 2 1 5 5 O 1.21613 * 120.00092 * 354.09030 * 4 3 2 6 6 N 1.34770 * 119.99690 * 174.08820 * 4 3 2 7 7 C 1.46503 * 120.00630 * 359.97438 * 6 4 3 8 8 C 1.46508 * 119.99917 * 179.97438 * 6 4 3 9 9 C 1.53003 * 109.46983 * 89.99823 * 8 6 4 10 10 H 1.09000 * 109.47328 * 305.00318 * 9 8 6 11 11 O 1.42904 * 109.46920 * 65.00426 * 9 8 6 12 12 C 1.53002 * 109.47047 * 185.00172 * 9 8 6 13 13 N 1.46895 * 109.47150 * 180.02562 * 12 9 8 14 14 C 1.46902 * 110.99967 * 180.02562 * 13 12 9 15 15 C 1.50702 * 109.46884 * 180.02562 * 14 13 12 16 16 O 1.21293 * 120.00518 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99957 * 179.97438 * 15 14 13 18 18 C 1.37087 * 120.00125 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00209 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00034 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00185 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47015 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46975 * 120.00258 * 22 20 18 25 25 H 1.48493 * 109.47517 * 240.00480 * 22 20 18 26 26 C 1.50699 * 119.99776 * 179.73011 * 2 1 3 27 27 C 1.52996 * 117.50396 * 4.13677 * 26 2 1 28 28 C 1.53005 * 117.49914 * 295.51051 * 26 2 1 29 29 H 1.08995 * 109.46721 * 184.66806 * 1 2 3 30 30 H 1.08996 * 109.46674 * 304.67260 * 1 2 3 31 31 H 1.09000 * 109.46819 * 64.67119 * 1 2 3 32 32 H 1.07995 * 120.00276 * 184.14285 * 3 2 1 33 33 H 1.08998 * 109.46870 * 89.99725 * 7 6 4 34 34 H 1.08999 * 109.47301 * 210.00188 * 7 6 4 35 35 H 1.08998 * 109.46731 * 330.00206 * 7 6 4 36 36 H 1.08994 * 109.47195 * 209.99954 * 8 6 4 37 37 H 1.08995 * 109.46812 * 330.00298 * 8 6 4 38 38 H 0.96691 * 114.00149 * 60.00051 * 11 9 8 39 39 H 1.09000 * 109.47176 * 300.00239 * 12 9 8 40 40 H 1.08998 * 109.46801 * 60.00141 * 12 9 8 41 41 H 1.00902 * 111.00110 * 303.95787 * 13 12 9 42 42 H 1.08994 * 109.46778 * 299.99819 * 14 13 12 43 43 H 1.08997 * 109.47042 * 60.00311 * 14 13 12 44 44 H 0.96999 * 119.99710 * 0.02562 * 17 15 14 45 45 H 0.97004 * 120.00006 * 179.97438 * 21 20 18 46 46 H 1.09000 * 115.55063 * 149.84550 * 26 2 1 47 47 H 1.09004 * 117.49595 * 359.97438 * 27 26 2 48 48 H 1.08994 * 117.50712 * 145.02114 * 27 26 2 49 49 H 1.08996 * 117.50061 * 214.97842 * 28 26 2 50 50 H 1.09003 * 117.49634 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4394 2.4240 0.0922 5 8 0.2237 2.4294 0.0601 6 7 2.1155 3.5837 0.2123 7 6 3.5800 3.5772 0.2517 8 6 1.3859 4.8509 0.3036 9 6 1.0928 5.1660 1.7719 10 1 0.5650 4.3269 2.2252 11 8 2.3221 5.3867 2.4663 12 6 0.2244 6.4226 1.8603 13 7 -0.0565 6.7254 3.2700 14 6 -0.8906 7.9283 3.3939 15 6 -1.1566 8.2072 4.8508 16 8 -0.6963 7.4761 5.7022 17 7 -1.9053 9.2696 5.2078 18 6 -2.1477 9.5230 6.5331 19 1 -1.7386 8.8716 7.2911 20 6 -2.9191 10.6185 6.9012 21 7 -3.4166 11.4115 5.9789 22 14 -3.2489 10.9643 8.7070 23 1 -2.5810 9.9311 9.5388 24 1 -2.7151 12.3043 9.0600 25 1 -4.7121 10.9325 8.9580 26 6 2.2605 -1.3051 0.0061 27 6 1.4416 -2.5942 -0.0857 28 6 2.1075 -2.2034 1.2353 29 1 -0.3632 -1.0242 0.0836 30 1 -0.3632 0.5846 0.8452 31 1 -0.3633 0.4397 -0.9289 32 1 3.2499 1.1529 -0.0676 33 1 3.9710 3.6654 -0.7620 34 1 3.9311 4.4173 0.8509 35 1 3.9274 2.6442 0.6952 36 1 1.9903 5.6498 -0.1258 37 1 0.4475 4.7701 -0.2449 38 1 2.8454 6.1204 2.1160 39 1 0.7522 7.2616 1.4070 40 1 -0.7132 6.2542 1.3306 41 1 -0.4878 5.9378 3.7301 42 1 -0.3711 8.7778 2.9507 43 1 -1.8362 7.7698 2.8754 44 1 -2.2731 9.8545 4.5270 45 1 -3.9553 12.1761 6.2358 46 1 3.2320 -1.2895 -0.4879 47 1 0.3577 -2.4983 -0.1501 48 1 1.8740 -3.4268 -0.6403 49 1 2.9781 -2.7790 1.5495 50 1 1.4622 -1.8501 2.0396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725689288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:04 Heat of formation + Delta-G solvation = -70.896671 kcal Electronic energy + Delta-G solvation = -28724.884602 eV Core-core repulsion = 24560.733601 eV Total energy + Delta-G solvation = -4164.151001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.39473 -38.65994 -38.25761 -37.61311 -35.52697 -34.66147 -33.74093 -33.54651 -31.21737 -30.72454 -28.35098 -27.60638 -26.46552 -25.22451 -24.04875 -23.02488 -22.79228 -21.77342 -19.99217 -19.20637 -18.47301 -17.86360 -17.59096 -16.81609 -16.60258 -16.12471 -15.90387 -15.62785 -15.28790 -14.95227 -14.74102 -14.46400 -14.38596 -13.93787 -13.63171 -13.56924 -13.29413 -13.23873 -13.00031 -12.84462 -12.81996 -12.43591 -12.33905 -11.95638 -11.91276 -11.77520 -11.54944 -11.50462 -11.45749 -11.21959 -11.08570 -11.02757 -10.89012 -10.33226 -10.31481 -10.19139 -9.73790 -9.48840 -9.33338 -8.70894 -8.39501 -8.00052 -7.91999 -6.38766 -3.79310 1.02907 2.72639 3.01787 3.18770 3.29013 3.36819 3.44440 3.94585 4.01213 4.08215 4.26101 4.38537 4.43202 4.44800 4.55944 4.64513 4.71471 4.82789 4.91340 4.96262 5.04288 5.11880 5.16655 5.18402 5.27487 5.31351 5.38162 5.41523 5.46118 5.48400 5.56687 5.61899 5.62170 5.65310 5.77322 5.82805 5.97367 6.00207 6.14530 6.21609 6.28198 6.31189 7.15171 7.23223 7.58525 7.62309 7.76162 8.00137 8.10074 8.65045 9.21439 9.57894 10.09820 10.79160 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.001673 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.482760 B =16728.323985 C =17395.903640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.002 3.998 3 C -0.230 4.230 4 C 0.546 3.454 5 O -0.541 6.541 6 N -0.606 5.606 7 C 0.081 3.919 8 C 0.086 3.914 9 C 0.098 3.902 10 H 0.099 0.901 11 O -0.541 6.541 12 C 0.029 3.971 13 N -0.658 5.658 14 C 0.050 3.950 15 C 0.442 3.558 16 O -0.580 6.580 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.135 4.135 27 C -0.176 4.176 28 C -0.163 4.163 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.368 0.632 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.350 0.650 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.116 0.884 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.402 -21.332 -19.301 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.000 4.000 3 C -0.251 4.251 4 C 0.338 3.662 5 O -0.420 6.420 6 N -0.338 5.338 7 C -0.062 4.062 8 C -0.038 4.038 9 C 0.037 3.963 10 H 0.117 0.883 11 O -0.345 6.345 12 C -0.102 4.102 13 N -0.291 5.291 14 C -0.082 4.082 15 C 0.227 3.773 16 O -0.464 6.464 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.153 4.153 27 C -0.212 4.212 28 C -0.200 4.200 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.214 0.786 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.170 0.830 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.134 0.866 47 H 0.123 0.877 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.345 -21.800 -18.261 31.413 hybrid contribution -0.914 0.975 -0.282 1.366 sum 12.431 -20.825 -18.542 30.529 Atomic orbital electron populations 1.21160 0.90649 1.01517 1.04543 1.21825 0.96258 0.92385 0.89533 1.22306 1.00187 0.91670 1.10953 1.18538 0.87153 0.84168 0.76380 1.90781 1.13667 1.86939 1.50636 1.47532 1.07163 1.06087 1.73066 1.21849 0.79169 1.03918 1.01293 1.22160 0.98596 0.85363 0.97641 1.22294 0.85771 0.97163 0.91063 0.88334 1.86670 1.32572 1.55304 1.59937 1.22600 0.98850 0.97780 0.90937 1.59987 1.50681 1.07000 1.11389 1.21690 0.95611 0.94325 0.96621 1.19815 0.83839 0.84100 0.89560 1.90536 1.54362 1.49749 1.51776 1.41866 1.45333 1.24415 1.08608 1.19763 1.29349 1.10164 0.83479 0.87870 1.25259 0.96850 0.95921 0.99987 1.69624 1.35199 1.16379 1.33232 0.85795 0.77990 0.78337 0.82196 1.19221 1.20764 1.20799 1.21260 1.00505 0.89172 1.04389 1.23148 1.00090 0.97311 1.00701 1.22997 1.03526 1.01848 0.91618 0.92530 0.89355 0.89962 0.85479 0.92972 0.90320 0.90891 0.90073 0.88940 0.78572 0.90786 0.94564 0.83023 0.89701 0.93987 0.77496 0.91976 0.86644 0.87736 0.88279 0.88095 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.22 36.01 0.30 -0.85 16 2 C 0.00 0.02 5.81 -101.17 -0.59 -0.57 16 3 C -0.23 -2.05 8.79 -37.80 -0.33 -2.39 16 4 C 0.55 6.17 7.58 -12.66 -0.10 6.08 16 5 O -0.54 -7.62 12.68 5.27 0.07 -7.55 16 6 N -0.61 -5.72 2.84 -182.97 -0.52 -6.24 16 7 C 0.08 0.52 9.93 59.85 0.59 1.11 16 8 C 0.09 0.80 5.07 -4.04 -0.02 0.78 16 9 C 0.10 1.13 3.42 -26.73 -0.09 1.04 16 10 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 11 O -0.54 -6.60 12.03 -35.23 -0.42 -7.02 16 12 C 0.03 0.36 5.35 -3.83 -0.02 0.34 16 13 N -0.66 -11.22 5.99 -115.06 -0.69 -11.91 16 14 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 15 C 0.44 10.81 7.82 -10.98 -0.09 10.72 16 16 O -0.58 -16.43 15.78 5.55 0.09 -16.34 16 17 N -0.57 -14.71 5.29 -10.96 -0.06 -14.77 16 18 C -0.30 -8.51 9.68 -14.94 -0.14 -8.66 16 19 H 0.10 3.10 7.16 -52.49 -0.38 2.73 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 22 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.14 -0.86 6.01 -91.77 -0.55 -1.41 16 27 C -0.18 -0.95 9.86 -26.73 -0.26 -1.21 16 28 C -0.16 -0.94 10.23 -26.73 -0.27 -1.21 16 29 H 0.06 0.42 5.44 -51.93 -0.28 0.14 16 30 H 0.09 1.01 6.81 -51.93 -0.35 0.66 16 31 H 0.08 0.84 7.59 -51.93 -0.39 0.45 16 32 H 0.13 0.84 6.33 -52.49 -0.33 0.51 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.47 7.11 -51.93 -0.37 0.10 16 35 H 0.07 0.42 6.18 -51.93 -0.32 0.10 16 36 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 37 H 0.09 0.95 7.42 -51.93 -0.39 0.56 16 38 H 0.37 3.19 9.04 45.56 0.41 3.60 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.35 6.45 8.43 -39.29 -0.33 6.12 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.57 5.90 -51.93 -0.31 0.26 16 48 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 411.07 15.07 6.19 6.19 Total: -1.00 -35.25 411.07 -8.49 -43.74 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -7.14 Total: 16.57 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.70 Total: 5.14 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.54 Total: -57.14 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.27 Total: -30.92 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.25 -8.49 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725689288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.155 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds