Wall clock time and date at job start Tue Mar 31 2020 23:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32987 * 120.00172 * 2 1 4 4 C 1.47109 * 119.99863 * 4.15100 * 3 2 1 5 5 O 1.21613 * 120.00092 * 354.09030 * 4 3 2 6 6 N 1.34770 * 119.99690 * 174.08820 * 4 3 2 7 7 C 1.46503 * 120.00630 * 359.97438 * 6 4 3 8 8 C 1.46508 * 119.99917 * 179.97438 * 6 4 3 9 9 C 1.53003 * 109.46983 * 89.99823 * 8 6 4 10 10 H 1.09000 * 109.47328 * 305.00318 * 9 8 6 11 11 O 1.42904 * 109.46920 * 65.00426 * 9 8 6 12 12 C 1.53002 * 109.47047 * 185.00172 * 9 8 6 13 13 N 1.46895 * 109.47150 * 180.02562 * 12 9 8 14 14 C 1.46902 * 110.99967 * 180.02562 * 13 12 9 15 15 C 1.50702 * 109.46884 * 180.02562 * 14 13 12 16 16 O 1.21293 * 120.00518 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99957 * 179.97438 * 15 14 13 18 18 C 1.37087 * 120.00125 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00209 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00034 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00185 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47015 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46975 * 120.00258 * 22 20 18 25 25 H 1.48493 * 109.47517 * 240.00480 * 22 20 18 26 26 C 1.50699 * 119.99776 * 179.73011 * 2 1 3 27 27 C 1.52996 * 117.50396 * 4.13677 * 26 2 1 28 28 C 1.53005 * 117.49914 * 295.51051 * 26 2 1 29 29 H 1.08995 * 109.46721 * 184.66806 * 1 2 3 30 30 H 1.08996 * 109.46674 * 304.67260 * 1 2 3 31 31 H 1.09000 * 109.46819 * 64.67119 * 1 2 3 32 32 H 1.07995 * 120.00276 * 184.14285 * 3 2 1 33 33 H 1.08998 * 109.46870 * 89.99725 * 7 6 4 34 34 H 1.08999 * 109.47301 * 210.00188 * 7 6 4 35 35 H 1.08998 * 109.46731 * 330.00206 * 7 6 4 36 36 H 1.08994 * 109.47195 * 209.99954 * 8 6 4 37 37 H 1.08995 * 109.46812 * 330.00298 * 8 6 4 38 38 H 0.96691 * 114.00149 * 60.00051 * 11 9 8 39 39 H 1.09000 * 109.47176 * 300.00239 * 12 9 8 40 40 H 1.08998 * 109.46801 * 60.00141 * 12 9 8 41 41 H 1.00902 * 111.00110 * 303.95787 * 13 12 9 42 42 H 1.08994 * 109.46778 * 299.99819 * 14 13 12 43 43 H 1.08997 * 109.47042 * 60.00311 * 14 13 12 44 44 H 0.96999 * 119.99710 * 0.02562 * 17 15 14 45 45 H 0.97004 * 120.00006 * 179.97438 * 21 20 18 46 46 H 1.09000 * 115.55063 * 149.84550 * 26 2 1 47 47 H 1.09004 * 117.49595 * 359.97438 * 27 26 2 48 48 H 1.08994 * 117.50712 * 145.02114 * 27 26 2 49 49 H 1.08996 * 117.50061 * 214.97842 * 28 26 2 50 50 H 1.09003 * 117.49634 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4394 2.4240 0.0922 5 8 0.2237 2.4294 0.0601 6 7 2.1155 3.5837 0.2123 7 6 3.5800 3.5772 0.2517 8 6 1.3859 4.8509 0.3036 9 6 1.0928 5.1660 1.7719 10 1 0.5650 4.3269 2.2252 11 8 2.3221 5.3867 2.4663 12 6 0.2244 6.4226 1.8603 13 7 -0.0565 6.7254 3.2700 14 6 -0.8906 7.9283 3.3939 15 6 -1.1566 8.2072 4.8508 16 8 -0.6963 7.4761 5.7022 17 7 -1.9053 9.2696 5.2078 18 6 -2.1477 9.5230 6.5331 19 1 -1.7386 8.8716 7.2911 20 6 -2.9191 10.6185 6.9012 21 7 -3.4166 11.4115 5.9789 22 14 -3.2489 10.9643 8.7070 23 1 -2.5810 9.9311 9.5388 24 1 -2.7151 12.3043 9.0600 25 1 -4.7121 10.9325 8.9580 26 6 2.2605 -1.3051 0.0061 27 6 1.4416 -2.5942 -0.0857 28 6 2.1075 -2.2034 1.2353 29 1 -0.3632 -1.0242 0.0836 30 1 -0.3632 0.5846 0.8452 31 1 -0.3633 0.4397 -0.9289 32 1 3.2499 1.1529 -0.0676 33 1 3.9710 3.6654 -0.7620 34 1 3.9311 4.4173 0.8509 35 1 3.9274 2.6442 0.6952 36 1 1.9903 5.6498 -0.1258 37 1 0.4475 4.7701 -0.2449 38 1 2.8454 6.1204 2.1160 39 1 0.7522 7.2616 1.4070 40 1 -0.7132 6.2542 1.3306 41 1 -0.4878 5.9378 3.7301 42 1 -0.3711 8.7778 2.9507 43 1 -1.8362 7.7698 2.8754 44 1 -2.2731 9.8545 4.5270 45 1 -3.9553 12.1761 6.2358 46 1 3.2320 -1.2895 -0.4879 47 1 0.3577 -2.4983 -0.1501 48 1 1.8740 -3.4268 -0.6403 49 1 2.9781 -2.7790 1.5495 50 1 1.4622 -1.8501 2.0396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725689288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:02 Heat of formation + Delta-G solvation = -98.430990 kcal Electronic energy + Delta-G solvation = -28726.078580 eV Core-core repulsion = 24560.733601 eV Total energy + Delta-G solvation = -4165.344979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.18492 -40.20179 -39.22916 -38.54292 -36.53536 -36.04360 -35.54370 -34.20155 -33.28926 -31.71336 -29.34755 -28.56565 -27.40847 -26.60460 -25.26210 -23.99382 -23.22836 -22.73962 -21.11545 -20.66359 -19.93116 -19.13718 -18.41721 -17.98485 -17.38019 -17.32217 -16.97919 -16.68567 -16.44010 -16.14142 -16.07189 -15.86070 -15.40770 -15.24202 -14.98022 -14.60909 -14.35535 -14.22150 -13.88405 -13.84448 -13.56657 -13.48865 -13.41483 -13.21800 -13.03916 -12.91196 -12.72668 -12.54321 -12.49134 -12.42480 -12.12634 -12.09873 -12.02810 -11.76012 -11.53457 -11.33637 -11.25057 -10.57154 -10.37059 -10.03383 -10.00773 -9.42884 -9.33202 -8.48468 -5.97417 0.32590 1.35533 1.40731 1.55292 2.00578 2.02878 2.26744 2.28434 2.87537 2.97114 3.18431 3.41413 3.46124 3.64187 3.81324 3.86372 3.94315 3.97903 4.09879 4.12992 4.13667 4.21148 4.30629 4.40385 4.41764 4.48362 4.53100 4.61400 4.65704 4.71930 4.75591 4.80342 4.83172 4.96158 4.99397 5.03204 5.10732 5.13526 5.24711 5.39424 5.45199 5.51261 5.60483 5.85664 6.07712 6.27400 6.42634 6.58441 6.96366 7.10918 7.20448 7.53835 8.09813 8.69133 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.001673 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.482760 B =16728.323985 C =17395.903640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.001 4.001 3 C -0.237 4.237 4 C 0.531 3.469 5 O -0.581 6.581 6 N -0.606 5.606 7 C 0.075 3.925 8 C 0.092 3.908 9 C 0.109 3.891 10 H 0.063 0.937 11 O -0.558 6.558 12 C 0.033 3.967 13 N -0.674 5.674 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.994 3.006 23 H -0.275 1.275 24 H -0.269 1.269 25 H -0.270 1.270 26 C -0.140 4.140 27 C -0.172 4.172 28 C -0.165 4.165 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.385 0.615 39 H 0.100 0.900 40 H 0.044 0.956 41 H 0.337 0.663 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.133 0.867 47 H 0.100 0.900 48 H 0.116 0.884 49 H 0.117 0.883 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.887 -21.281 -20.599 33.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.003 4.003 3 C -0.258 4.258 4 C 0.324 3.676 5 O -0.464 6.464 6 N -0.337 5.337 7 C -0.066 4.066 8 C -0.032 4.032 9 C 0.048 3.952 10 H 0.081 0.919 11 O -0.365 6.365 12 C -0.097 4.097 13 N -0.306 5.306 14 C -0.067 4.067 15 C 0.223 3.777 16 O -0.511 6.511 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.818 3.182 23 H -0.200 1.200 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.158 4.158 27 C -0.208 4.208 28 C -0.202 4.202 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.171 0.829 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.234 0.766 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.155 0.845 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.151 0.849 47 H 0.118 0.882 48 H 0.135 0.865 49 H 0.135 0.865 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.862 -21.712 -19.606 32.813 hybrid contribution -1.356 0.945 0.106 1.656 sum 13.506 -20.767 -19.500 31.526 Atomic orbital electron populations 1.21047 0.91865 1.01842 1.02704 1.22021 0.95728 0.93676 0.88869 1.22458 1.01320 0.90627 1.11376 1.19071 0.86976 0.85479 0.76050 1.90760 1.15392 1.87600 1.52623 1.47677 1.08488 1.05580 1.71963 1.22066 0.77126 1.04596 1.02861 1.22099 0.98988 0.86405 0.95688 1.22065 0.85325 0.95562 0.92206 0.91895 1.86635 1.32818 1.56359 1.60659 1.22702 0.99638 0.99043 0.88316 1.60023 1.50161 1.06079 1.14298 1.21562 0.97345 0.95824 0.91971 1.20920 0.82092 0.82649 0.92019 1.90501 1.55727 1.50945 1.53962 1.41923 1.45896 1.25148 1.07982 1.19707 1.31331 1.11150 0.84364 0.90496 1.26048 0.95837 0.95054 1.04260 1.69677 1.34935 1.16495 1.34911 0.84856 0.78246 0.78229 0.76894 1.19969 1.19394 1.19507 1.21323 1.01161 0.88173 1.05166 1.23234 0.99893 0.97226 1.00451 1.23058 1.04020 1.01748 0.91327 0.90842 0.92067 0.91293 0.82884 0.90826 0.89646 0.90313 0.86630 0.90143 0.76641 0.88168 0.93790 0.84511 0.87229 0.91857 0.76904 0.91239 0.84872 0.88191 0.86538 0.86505 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.22 71.24 0.59 -1.77 16 2 C 0.00 -0.02 5.81 -17.61 -0.10 -0.12 16 3 C -0.24 -4.10 8.79 23.43 0.21 -3.89 16 4 C 0.53 12.18 7.58 86.57 0.66 12.83 16 5 O -0.58 -17.36 12.68 -4.07 -0.05 -17.41 16 6 N -0.61 -10.84 2.84 -851.06 -2.41 -13.26 16 7 C 0.08 0.79 9.93 127.77 1.27 2.06 16 8 C 0.09 1.59 5.07 86.38 0.44 2.02 16 9 C 0.11 2.48 3.42 30.60 0.10 2.59 16 10 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 11 O -0.56 -13.01 12.03 -148.98 -1.79 -14.80 16 12 C 0.03 0.76 5.35 86.31 0.46 1.22 16 13 N -0.67 -22.69 5.99 -517.95 -3.10 -25.80 16 14 C 0.07 2.32 6.17 85.56 0.53 2.85 16 15 C 0.44 21.65 7.82 87.66 0.69 22.33 16 16 O -0.62 -36.52 15.78 -3.07 -0.05 -36.57 16 17 N -0.57 -30.25 5.29 -306.98 -1.62 -31.87 16 18 C -0.34 -19.64 9.68 84.04 0.81 -18.82 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 21 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 22 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 C -0.14 -1.56 6.01 -11.54 -0.07 -1.63 16 27 C -0.17 -1.57 9.86 30.59 0.30 -1.27 16 28 C -0.16 -1.68 10.23 30.60 0.31 -1.37 16 29 H 0.07 1.13 5.44 -2.39 -0.01 1.12 16 30 H 0.06 1.55 6.81 -2.39 -0.02 1.54 16 31 H 0.07 1.53 7.59 -2.39 -0.02 1.51 16 32 H 0.15 1.71 6.33 -2.91 -0.02 1.70 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.80 7.11 -2.39 -0.02 0.78 16 35 H 0.08 0.74 6.18 -2.39 -0.01 0.73 16 36 H 0.12 1.19 8.07 -2.39 -0.02 1.17 16 37 H 0.08 1.62 7.42 -2.39 -0.02 1.60 16 38 H 0.38 5.80 9.04 -74.06 -0.67 5.13 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.34 12.77 8.43 -89.69 -0.76 12.01 16 42 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 45 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.10 1.00 5.90 -2.38 -0.01 0.98 16 48 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -79.08 411.07 -1.24 -80.32 By element: Atomic # 1 Polarization: 47.86 SS G_CDS: -1.17 Total: 46.69 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 6.66 Total: 16.83 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -6.86 Total: -120.87 kcal Atomic # 8 Polarization: -66.89 SS G_CDS: -1.89 Total: -68.78 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -79.08 -1.24 -80.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725689288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.114 kcal (2) G-P(sol) polarization free energy of solvation -79.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds