Wall clock time and date at job start Tue Mar 31 2020 23:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32990 * 120.00190 * 2 1 4 4 C 1.47107 * 120.00117 * 353.10620 * 3 2 1 5 5 O 1.21621 * 119.99444 * 353.76878 * 4 3 2 6 6 N 1.34765 * 120.00270 * 173.76718 * 4 3 2 7 7 C 1.46503 * 120.00193 * 0.02562 * 6 4 3 8 8 C 1.46500 * 120.00367 * 180.02562 * 6 4 3 9 9 C 1.53003 * 109.47277 * 270.00582 * 8 6 4 10 10 H 1.08996 * 109.47378 * 59.99463 * 9 8 6 11 11 O 1.42904 * 109.46609 * 299.99370 * 9 8 6 12 12 C 1.53000 * 109.47166 * 179.97438 * 9 8 6 13 13 N 1.46900 * 109.47109 * 184.99219 * 12 9 8 14 14 C 1.46903 * 111.00167 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.47025 * 180.02562 * 14 13 12 16 16 O 1.21290 * 120.00270 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99753 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00086 * 180.02562 * 17 15 14 19 19 H 1.08006 * 119.99727 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00062 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00114 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99709 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47215 * 60.00179 * 22 20 18 24 24 H 1.48502 * 109.46805 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46977 * 299.99535 * 22 20 18 26 26 C 1.50706 * 120.00049 * 179.97438 * 2 1 3 27 27 C 1.52996 * 117.49482 * 8.62731 * 26 2 1 28 28 C 1.52994 * 117.49981 * 300.00248 * 26 2 1 29 29 H 1.09008 * 109.47081 * 84.53625 * 1 2 3 30 30 H 1.09002 * 109.47271 * 204.53087 * 1 2 3 31 31 H 1.09000 * 109.47178 * 324.53671 * 1 2 3 32 32 H 1.08001 * 120.00325 * 173.11335 * 3 2 1 33 33 H 1.08990 * 109.47282 * 270.00068 * 7 6 4 34 34 H 1.09000 * 109.46512 * 30.00353 * 7 6 4 35 35 H 1.08999 * 109.46964 * 149.99843 * 7 6 4 36 36 H 1.09011 * 109.47038 * 29.99918 * 8 6 4 37 37 H 1.09001 * 109.47786 * 149.99875 * 8 6 4 38 38 H 0.96701 * 113.99858 * 299.99902 * 11 9 8 39 39 H 1.09001 * 109.47369 * 304.99906 * 12 9 8 40 40 H 1.08999 * 109.47117 * 64.99757 * 12 9 8 41 41 H 1.00903 * 110.99485 * 56.04799 * 13 12 9 42 42 H 1.09001 * 109.46972 * 300.00647 * 14 13 12 43 43 H 1.09003 * 109.46628 * 60.00141 * 14 13 12 44 44 H 0.97003 * 119.99912 * 359.97438 * 17 15 14 45 45 H 0.96997 * 119.99829 * 180.02562 * 21 20 18 46 46 H 1.08999 * 115.54612 * 154.32937 * 26 2 1 47 47 H 1.09001 * 117.50343 * 359.97438 * 27 26 2 48 48 H 1.09005 * 117.49880 * 145.02057 * 27 26 2 49 49 H 1.08998 * 117.50038 * 214.97570 * 28 26 2 50 50 H 1.09005 * 117.49485 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4444 2.4211 -0.1529 5 8 0.2521 2.4135 -0.3925 6 7 2.0992 3.5924 -0.0275 7 6 3.5356 3.6015 0.2605 8 6 1.3746 4.8566 -0.1793 9 6 1.4058 5.2895 -1.6464 10 1 0.9332 4.5237 -2.2614 11 8 2.7617 5.4647 -2.0625 12 6 0.6486 6.6094 -1.8050 13 7 0.5755 6.9641 -3.2286 14 6 -0.1470 8.2288 -3.4197 15 6 -0.2020 8.5588 -4.8891 16 8 0.3099 7.8136 -5.6977 17 7 -0.8200 9.6821 -5.3048 18 6 -0.8705 9.9821 -6.6416 19 1 -0.4147 9.3185 -7.3615 20 6 -1.5082 11.1399 -7.0702 21 7 -2.0632 11.9470 -6.1942 22 14 -1.5763 11.5490 -8.8916 23 1 -2.2811 10.4617 -9.6171 24 1 -2.3073 12.8271 -9.0848 25 1 -0.1953 11.6831 -9.4207 26 6 2.2605 -1.3051 0.0006 27 6 1.4516 -2.5879 -0.2024 28 6 2.0260 -2.2557 1.1762 29 1 -0.3634 0.0979 -1.0231 30 1 -0.3634 -0.9349 0.4267 31 1 -0.3633 0.8370 0.5962 32 1 3.2461 1.1551 0.1121 33 1 3.6897 3.6089 1.3394 34 1 3.9973 2.7112 -0.1665 35 1 3.9882 4.4911 -0.1773 36 1 0.3403 4.7229 0.1381 37 1 1.8472 5.6224 0.4357 38 1 3.2448 6.1330 -1.5574 39 1 -0.3597 6.5002 -1.4055 40 1 1.1716 7.3960 -1.2610 41 1 0.1523 6.2216 -3.7650 42 1 -1.1608 8.1303 -3.0316 43 1 0.3701 9.0268 -2.8868 44 1 -1.2298 10.2779 -4.6582 45 1 -2.5087 12.7550 -6.4935 46 1 3.2631 -1.2692 -0.4255 47 1 0.3745 -2.4879 -0.3360 48 1 1.9221 -3.3963 -0.7622 49 1 2.8743 -2.8456 1.5235 50 1 1.3271 -1.9369 1.9495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725689300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:10 Heat of formation + Delta-G solvation = -70.656513 kcal Electronic energy + Delta-G solvation = -28651.604709 eV Core-core repulsion = 24487.464121 eV Total energy + Delta-G solvation = -4164.140587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.40752 -38.66736 -38.25692 -37.62269 -35.52454 -34.67322 -33.74085 -33.55320 -31.21783 -30.73392 -28.34339 -27.60958 -26.46751 -25.21874 -24.04390 -23.01888 -22.81716 -21.79339 -20.00154 -19.20387 -18.48148 -17.86150 -17.60345 -16.82965 -16.56386 -16.16352 -15.88192 -15.65072 -15.21651 -15.05426 -14.65601 -14.57562 -14.37661 -13.86661 -13.67056 -13.53621 -13.32709 -13.25434 -12.99301 -12.97040 -12.77112 -12.42182 -12.23673 -11.96277 -11.92279 -11.78374 -11.55411 -11.49991 -11.45791 -11.33972 -11.10359 -10.98487 -10.91034 -10.41402 -10.35898 -10.17771 -9.71500 -9.46446 -9.30858 -8.70247 -8.39332 -7.99902 -7.91718 -6.38229 -3.78897 1.01489 2.73311 3.00106 3.23160 3.28187 3.33117 3.45254 3.94992 4.00130 4.08277 4.26422 4.36365 4.42558 4.43140 4.54781 4.61911 4.73006 4.82422 4.92227 4.96211 5.05003 5.13262 5.16715 5.18532 5.27055 5.28067 5.36934 5.39401 5.44095 5.47227 5.52139 5.59039 5.60566 5.64571 5.75903 5.82873 5.98602 6.00286 6.15691 6.20928 6.27568 6.30870 7.15155 7.23383 7.58474 7.61274 7.75146 8.00369 8.09994 8.65461 9.21606 9.58125 10.10220 10.79548 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.001611 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.759137 B =17374.066500 C =17942.267839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.003 3.997 3 C -0.231 4.231 4 C 0.547 3.453 5 O -0.540 6.540 6 N -0.605 5.605 7 C 0.082 3.918 8 C 0.086 3.914 9 C 0.098 3.902 10 H 0.100 0.900 11 O -0.541 6.541 12 C 0.030 3.970 13 N -0.659 5.659 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.581 6.581 17 N -0.565 5.565 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.135 4.135 27 C -0.171 4.171 28 C -0.166 4.166 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.367 0.633 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.350 0.650 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.416 -22.493 21.470 32.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.001 3.999 3 C -0.252 4.252 4 C 0.338 3.662 5 O -0.420 6.420 6 N -0.337 5.337 7 C -0.061 4.061 8 C -0.038 4.038 9 C 0.037 3.963 10 H 0.118 0.882 11 O -0.345 6.345 12 C -0.101 4.101 13 N -0.291 5.291 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.465 6.465 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.153 4.153 27 C -0.208 4.208 28 C -0.203 4.203 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.213 0.787 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.170 0.830 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.134 0.866 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.492 -22.958 20.328 32.099 hybrid contribution -0.895 1.006 0.115 1.352 sum 8.597 -21.952 20.442 31.204 Atomic orbital electron populations 1.21193 0.90765 1.02375 1.03928 1.21811 0.96180 0.92361 0.89577 1.22328 1.00397 0.91679 1.10749 1.18527 0.86715 0.84126 0.76783 1.90768 1.15111 1.87287 1.48789 1.47518 1.09697 1.05504 1.71009 1.21847 0.80195 1.03901 1.00206 1.22158 0.99071 0.85345 0.97255 1.22299 0.83570 0.96400 0.94061 0.88183 1.86689 1.22919 1.62087 1.62766 1.22606 0.99117 0.97174 0.91190 1.59999 1.57605 1.05209 1.06332 1.21689 0.96508 0.93284 0.96743 1.19808 0.84267 0.83969 0.89309 1.90534 1.49980 1.50792 1.55158 1.41851 1.49342 1.20326 1.08627 1.19669 1.33625 1.06333 0.83289 0.87982 1.25253 0.96691 0.95840 1.00144 1.69605 1.36971 1.13482 1.34387 0.85911 0.78526 0.77569 0.82167 1.19942 1.20996 1.19890 1.21297 1.00293 0.88804 1.04931 1.23081 1.00570 0.97573 0.99566 1.22986 1.03726 1.01912 0.91698 0.89982 0.92631 0.89090 0.85381 0.92952 0.90872 0.90447 0.88928 0.90107 0.78714 0.94595 0.90758 0.83016 0.93988 0.89703 0.77490 0.91871 0.86556 0.87911 0.88168 0.88179 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 7.91 36.00 0.28 -0.88 16 2 C 0.00 0.02 5.81 -101.17 -0.59 -0.57 16 3 C -0.23 -2.07 8.89 -37.80 -0.34 -2.41 16 4 C 0.55 6.21 7.48 -12.67 -0.09 6.12 16 5 O -0.54 -7.67 12.86 5.26 0.07 -7.60 16 6 N -0.61 -5.68 2.80 -182.97 -0.51 -6.19 16 7 C 0.08 0.51 9.93 59.85 0.59 1.10 16 8 C 0.09 0.79 5.10 -4.04 -0.02 0.77 16 9 C 0.10 1.13 3.42 -26.73 -0.09 1.04 16 10 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 11 O -0.54 -6.57 12.01 -35.23 -0.42 -7.00 16 12 C 0.03 0.37 5.32 -3.82 -0.02 0.35 16 13 N -0.66 -11.28 6.08 -115.05 -0.70 -11.98 16 14 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 15 C 0.44 10.83 7.82 -10.99 -0.09 10.74 16 16 O -0.58 -16.49 15.78 5.55 0.09 -16.40 16 17 N -0.56 -14.72 5.29 -10.96 -0.06 -14.77 16 18 C -0.30 -8.57 9.68 -14.93 -0.14 -8.72 16 19 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 22 Si 0.93 21.47 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.14 -0.86 6.01 -91.77 -0.55 -1.41 16 27 C -0.17 -0.93 9.76 -26.73 -0.26 -1.19 16 28 C -0.17 -0.84 10.10 -26.73 -0.27 -1.11 16 29 H 0.08 0.85 8.05 -51.92 -0.42 0.43 16 30 H 0.05 0.40 6.30 -51.93 -0.33 0.07 16 31 H 0.09 1.00 6.12 -51.93 -0.32 0.68 16 32 H 0.13 0.86 6.17 -52.49 -0.32 0.53 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.41 6.03 -51.93 -0.31 0.10 16 35 H 0.08 0.44 6.88 -51.93 -0.36 0.08 16 36 H 0.09 0.95 7.42 -51.92 -0.39 0.56 16 37 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 38 H 0.37 3.09 8.79 45.56 0.40 3.49 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.35 6.46 8.43 -39.29 -0.33 6.13 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.57 6.42 -51.93 -0.33 0.23 16 48 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 411.07 15.07 6.19 6.19 Total: -1.00 -35.42 411.07 -8.54 -43.95 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -7.19 Total: 16.32 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.71 Total: 5.25 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.54 Total: -57.16 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.27 Total: -31.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.42 -8.54 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725689300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.702 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds