Wall clock time and date at job start Tue Mar 31 2020 23:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32990 * 120.00190 * 2 1 4 4 C 1.47107 * 120.00117 * 353.10620 * 3 2 1 5 5 O 1.21621 * 119.99444 * 353.76878 * 4 3 2 6 6 N 1.34765 * 120.00270 * 173.76718 * 4 3 2 7 7 C 1.46503 * 120.00193 * 0.02562 * 6 4 3 8 8 C 1.46500 * 120.00367 * 180.02562 * 6 4 3 9 9 C 1.53003 * 109.47277 * 270.00582 * 8 6 4 10 10 H 1.08996 * 109.47378 * 59.99463 * 9 8 6 11 11 O 1.42904 * 109.46609 * 299.99370 * 9 8 6 12 12 C 1.53000 * 109.47166 * 179.97438 * 9 8 6 13 13 N 1.46900 * 109.47109 * 184.99219 * 12 9 8 14 14 C 1.46903 * 111.00167 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.47025 * 180.02562 * 14 13 12 16 16 O 1.21290 * 120.00270 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99753 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00086 * 180.02562 * 17 15 14 19 19 H 1.08006 * 119.99727 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00062 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00114 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99709 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47215 * 60.00179 * 22 20 18 24 24 H 1.48502 * 109.46805 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46977 * 299.99535 * 22 20 18 26 26 C 1.50706 * 120.00049 * 179.97438 * 2 1 3 27 27 C 1.52996 * 117.49482 * 8.62731 * 26 2 1 28 28 C 1.52994 * 117.49981 * 300.00248 * 26 2 1 29 29 H 1.09008 * 109.47081 * 84.53625 * 1 2 3 30 30 H 1.09002 * 109.47271 * 204.53087 * 1 2 3 31 31 H 1.09000 * 109.47178 * 324.53671 * 1 2 3 32 32 H 1.08001 * 120.00325 * 173.11335 * 3 2 1 33 33 H 1.08990 * 109.47282 * 270.00068 * 7 6 4 34 34 H 1.09000 * 109.46512 * 30.00353 * 7 6 4 35 35 H 1.08999 * 109.46964 * 149.99843 * 7 6 4 36 36 H 1.09011 * 109.47038 * 29.99918 * 8 6 4 37 37 H 1.09001 * 109.47786 * 149.99875 * 8 6 4 38 38 H 0.96701 * 113.99858 * 299.99902 * 11 9 8 39 39 H 1.09001 * 109.47369 * 304.99906 * 12 9 8 40 40 H 1.08999 * 109.47117 * 64.99757 * 12 9 8 41 41 H 1.00903 * 110.99485 * 56.04799 * 13 12 9 42 42 H 1.09001 * 109.46972 * 300.00647 * 14 13 12 43 43 H 1.09003 * 109.46628 * 60.00141 * 14 13 12 44 44 H 0.97003 * 119.99912 * 359.97438 * 17 15 14 45 45 H 0.96997 * 119.99829 * 180.02562 * 21 20 18 46 46 H 1.08999 * 115.54612 * 154.32937 * 26 2 1 47 47 H 1.09001 * 117.50343 * 359.97438 * 27 26 2 48 48 H 1.09005 * 117.49880 * 145.02057 * 27 26 2 49 49 H 1.08998 * 117.50038 * 214.97570 * 28 26 2 50 50 H 1.09005 * 117.49485 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4444 2.4211 -0.1529 5 8 0.2521 2.4135 -0.3925 6 7 2.0992 3.5924 -0.0275 7 6 3.5356 3.6015 0.2605 8 6 1.3746 4.8566 -0.1793 9 6 1.4058 5.2895 -1.6464 10 1 0.9332 4.5237 -2.2614 11 8 2.7617 5.4647 -2.0625 12 6 0.6486 6.6094 -1.8050 13 7 0.5755 6.9641 -3.2286 14 6 -0.1470 8.2288 -3.4197 15 6 -0.2020 8.5588 -4.8891 16 8 0.3099 7.8136 -5.6977 17 7 -0.8200 9.6821 -5.3048 18 6 -0.8705 9.9821 -6.6416 19 1 -0.4147 9.3185 -7.3615 20 6 -1.5082 11.1399 -7.0702 21 7 -2.0632 11.9470 -6.1942 22 14 -1.5763 11.5490 -8.8916 23 1 -2.2811 10.4617 -9.6171 24 1 -2.3073 12.8271 -9.0848 25 1 -0.1953 11.6831 -9.4207 26 6 2.2605 -1.3051 0.0006 27 6 1.4516 -2.5879 -0.2024 28 6 2.0260 -2.2557 1.1762 29 1 -0.3634 0.0979 -1.0231 30 1 -0.3634 -0.9349 0.4267 31 1 -0.3633 0.8370 0.5962 32 1 3.2461 1.1551 0.1121 33 1 3.6897 3.6089 1.3394 34 1 3.9973 2.7112 -0.1665 35 1 3.9882 4.4911 -0.1773 36 1 0.3403 4.7229 0.1381 37 1 1.8472 5.6224 0.4357 38 1 3.2448 6.1330 -1.5574 39 1 -0.3597 6.5002 -1.4055 40 1 1.1716 7.3960 -1.2610 41 1 0.1523 6.2216 -3.7650 42 1 -1.1608 8.1303 -3.0316 43 1 0.3701 9.0268 -2.8868 44 1 -1.2298 10.2779 -4.6582 45 1 -2.5087 12.7550 -6.4935 46 1 3.2631 -1.2692 -0.4255 47 1 0.3745 -2.4879 -0.3360 48 1 1.9221 -3.3963 -0.7622 49 1 2.8743 -2.8456 1.5235 50 1 1.3271 -1.9369 1.9495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725689300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:09 Heat of formation + Delta-G solvation = -98.342038 kcal Electronic energy + Delta-G solvation = -28652.805243 eV Core-core repulsion = 24487.464121 eV Total energy + Delta-G solvation = -4165.341122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.19424 -40.19927 -39.23059 -38.53891 -36.53909 -36.03595 -35.54933 -34.19842 -33.28829 -31.72010 -29.33582 -28.55285 -27.40918 -26.59482 -25.25232 -23.98291 -23.21942 -22.75202 -21.11257 -20.66862 -19.92796 -19.13988 -18.41873 -18.00527 -17.33686 -17.31275 -16.98180 -16.66061 -16.48306 -16.13542 -16.09329 -15.80659 -15.45034 -15.24111 -15.00314 -14.50999 -14.33168 -14.26835 -13.90798 -13.82225 -13.65534 -13.47597 -13.36565 -13.20701 -12.99816 -12.85571 -12.70180 -12.54172 -12.44886 -12.43918 -12.14266 -12.12805 -12.03917 -11.85654 -11.52241 -11.35137 -11.26703 -10.55666 -10.36340 -10.03399 -9.97277 -9.41611 -9.32610 -8.47879 -5.97027 0.31919 1.39074 1.40769 1.52010 2.02512 2.03491 2.24642 2.28779 2.88258 2.99958 3.18937 3.41992 3.45905 3.62675 3.81079 3.84956 3.94024 3.98958 4.10166 4.14408 4.14600 4.23928 4.30850 4.41043 4.42977 4.48097 4.53455 4.64024 4.65591 4.71991 4.73507 4.79300 4.82440 4.96095 4.98768 5.04714 5.11246 5.14063 5.24242 5.39135 5.47617 5.51357 5.59902 5.86034 6.08080 6.27661 6.42941 6.58813 6.96086 7.10978 7.20945 7.54054 8.10151 8.69224 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.001611 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.759137 B =17374.066500 C =17942.267839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.002 3.998 3 C -0.240 4.240 4 C 0.532 3.468 5 O -0.581 6.581 6 N -0.605 5.605 7 C 0.076 3.924 8 C 0.092 3.908 9 C 0.109 3.891 10 H 0.063 0.937 11 O -0.558 6.558 12 C 0.033 3.967 13 N -0.676 5.676 14 C 0.066 3.934 15 C 0.435 3.565 16 O -0.626 6.626 17 N -0.571 5.571 18 C -0.338 4.338 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.268 1.268 25 H -0.272 1.272 26 C -0.146 4.146 27 C -0.174 4.174 28 C -0.155 4.155 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.384 0.616 39 H 0.046 0.954 40 H 0.100 0.900 41 H 0.337 0.663 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.128 0.872 47 H 0.097 0.903 48 H 0.112 0.888 49 H 0.117 0.883 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.671 -22.480 23.044 33.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.000 4.000 3 C -0.261 4.261 4 C 0.325 3.675 5 O -0.464 6.464 6 N -0.336 5.336 7 C -0.066 4.066 8 C -0.032 4.032 9 C 0.048 3.952 10 H 0.081 0.919 11 O -0.365 6.365 12 C -0.096 4.096 13 N -0.308 5.308 14 C -0.067 4.067 15 C 0.222 3.778 16 O -0.512 6.512 17 N -0.209 5.209 18 C -0.468 4.468 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.192 1.192 25 H -0.197 1.197 26 C -0.164 4.164 27 C -0.210 4.210 28 C -0.192 4.192 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.134 0.866 38 H 0.233 0.767 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.155 0.845 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.145 0.855 47 H 0.116 0.884 48 H 0.131 0.869 49 H 0.135 0.865 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.776 -22.912 21.960 33.515 hybrid contribution -1.264 0.976 -0.339 1.633 sum 9.512 -21.936 21.620 32.235 Atomic orbital electron populations 1.21082 0.91820 1.02425 1.02523 1.22013 0.95742 0.93567 0.88719 1.22461 1.01442 0.90699 1.11456 1.19054 0.86524 0.85472 0.76425 1.90747 1.16880 1.87962 1.50839 1.47663 1.10987 1.04963 1.69947 1.22074 0.78167 1.04684 1.01687 1.22097 0.99064 0.86239 0.95834 1.22064 0.83173 0.95051 0.94932 0.91935 1.86651 1.23114 1.63028 1.63712 1.22711 1.00203 0.98214 0.88490 1.60035 1.57340 1.04324 1.09102 1.21559 0.98452 0.94650 0.92000 1.20926 0.82364 0.82623 0.91841 1.90499 1.51485 1.51941 1.57287 1.41910 1.49870 1.21084 1.08011 1.19645 1.35591 1.07230 0.84331 0.90495 1.26040 0.95562 0.95041 1.04452 1.69661 1.36600 1.13633 1.36046 0.84980 0.78602 0.77799 0.76884 1.19834 1.19234 1.19711 1.21340 1.00651 0.87902 1.06493 1.23169 1.00354 0.97296 1.00223 1.23068 1.04042 1.00888 0.91217 0.91808 0.90805 0.91136 0.82974 0.90923 0.90299 0.89532 0.90208 0.86564 0.76680 0.93559 0.88140 0.84503 0.91776 0.87239 0.76891 0.91219 0.85457 0.88421 0.86939 0.86479 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 7.91 71.23 0.56 -1.81 16 2 C 0.00 0.03 5.81 -17.62 -0.10 -0.08 16 3 C -0.24 -4.20 8.89 23.43 0.21 -3.99 16 4 C 0.53 12.29 7.48 86.57 0.65 12.94 16 5 O -0.58 -17.54 12.86 -4.10 -0.05 -17.59 16 6 N -0.60 -10.79 2.80 -851.05 -2.38 -13.17 16 7 C 0.08 0.77 9.93 127.77 1.27 2.04 16 8 C 0.09 1.57 5.10 86.38 0.44 2.01 16 9 C 0.11 2.47 3.42 30.60 0.10 2.57 16 10 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 11 O -0.56 -12.92 12.01 -148.98 -1.79 -14.71 16 12 C 0.03 0.77 5.32 86.30 0.46 1.23 16 13 N -0.68 -22.83 6.08 -517.92 -3.15 -25.97 16 14 C 0.07 2.33 6.17 85.56 0.53 2.86 16 15 C 0.43 21.64 7.82 87.66 0.69 22.33 16 16 O -0.63 -36.64 15.78 -3.06 -0.05 -36.69 16 17 N -0.57 -30.23 5.29 -306.98 -1.62 -31.85 16 18 C -0.34 -19.79 9.68 84.04 0.81 -18.98 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 22 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C -0.15 -1.65 6.01 -11.54 -0.07 -1.72 16 27 C -0.17 -1.65 9.76 30.59 0.30 -1.35 16 28 C -0.16 -1.27 10.10 30.59 0.31 -0.96 16 29 H 0.06 1.45 8.05 -2.38 -0.02 1.43 16 30 H 0.07 1.08 6.30 -2.39 -0.02 1.07 16 31 H 0.07 1.67 6.12 -2.39 -0.01 1.66 16 32 H 0.15 1.79 6.17 -2.91 -0.02 1.77 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.08 0.72 6.03 -2.39 -0.01 0.71 16 35 H 0.09 0.74 6.88 -2.39 -0.02 0.73 16 36 H 0.08 1.61 7.42 -2.38 -0.02 1.59 16 37 H 0.12 1.17 8.07 -2.39 -0.02 1.15 16 38 H 0.38 5.56 8.79 -74.06 -0.65 4.91 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.34 12.78 8.43 -89.69 -0.76 12.03 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.40 19.76 7.90 -92.71 -0.73 19.02 16 45 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.13 1.16 8.14 -2.39 -0.02 1.15 16 47 H 0.10 1.01 6.42 -2.39 -0.02 1.00 16 48 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -79.48 411.07 -1.26 -80.74 By element: Atomic # 1 Polarization: 47.53 SS G_CDS: -1.15 Total: 46.38 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 6.62 Total: 16.96 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -6.87 Total: -120.88 kcal Atomic # 8 Polarization: -67.10 SS G_CDS: -1.89 Total: -68.99 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -79.48 -1.26 -80.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725689300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.603 kcal (2) G-P(sol) polarization free energy of solvation -79.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds