Wall clock time and date at job start Tue Mar 31 2020 23:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 119.99998 * 2 1 4 4 C 1.47104 * 119.99748 * 172.82044 * 3 2 1 5 5 O 1.21616 * 120.00196 * 352.64751 * 4 3 2 6 6 N 1.34783 * 119.99767 * 172.65378 * 4 3 2 7 7 C 1.46497 * 119.99974 * 359.97438 * 6 4 3 8 8 C 1.46500 * 119.99699 * 179.97438 * 6 4 3 9 9 C 1.53006 * 109.46861 * 89.99947 * 8 6 4 10 10 H 1.08996 * 109.47315 * 304.99335 * 9 8 6 11 11 O 1.42894 * 109.47432 * 64.99885 * 9 8 6 12 12 C 1.53006 * 109.46651 * 184.99910 * 9 8 6 13 13 N 1.46899 * 109.46759 * 179.97438 * 12 9 8 14 14 C 1.46902 * 110.99737 * 179.97438 * 13 12 9 15 15 C 1.50708 * 109.47167 * 180.02562 * 14 13 12 16 16 O 1.21292 * 119.99803 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99931 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99773 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00116 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00148 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00318 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99806 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47249 * 90.00136 * 22 20 18 24 24 H 1.48506 * 109.47129 * 210.00144 * 22 20 18 25 25 H 1.48503 * 109.47012 * 329.99681 * 22 20 18 26 26 C 1.50699 * 120.00044 * 179.97438 * 2 1 3 27 27 C 1.53005 * 117.50012 * 0.08872 * 26 2 1 28 28 C 1.53000 * 117.49957 * 291.42828 * 26 2 1 29 29 H 1.09002 * 109.46591 * 90.00438 * 1 2 3 30 30 H 1.08996 * 109.47575 * 209.99898 * 1 2 3 31 31 H 1.08993 * 109.47005 * 330.00890 * 1 2 3 32 32 H 1.07998 * 120.00329 * 353.09166 * 3 2 1 33 33 H 1.08993 * 109.46864 * 90.00656 * 7 6 4 34 34 H 1.09006 * 109.47197 * 210.00546 * 7 6 4 35 35 H 1.09000 * 109.47075 * 329.99871 * 7 6 4 36 36 H 1.08996 * 109.47077 * 209.99266 * 8 6 4 37 37 H 1.08992 * 109.47546 * 329.99708 * 8 6 4 38 38 H 0.96701 * 113.99842 * 59.99982 * 11 9 8 39 39 H 1.08999 * 109.47248 * 299.99519 * 12 9 8 40 40 H 1.09000 * 109.47074 * 60.00076 * 12 9 8 41 41 H 1.00898 * 111.00436 * 303.95371 * 13 12 9 42 42 H 1.09004 * 109.47172 * 299.99886 * 14 13 12 43 43 H 1.08996 * 109.47436 * 60.00270 * 14 13 12 44 44 H 0.97002 * 120.00034 * 359.97438 * 17 15 14 45 45 H 0.97004 * 119.99836 * 180.02562 * 21 20 18 46 46 H 1.08999 * 115.55410 * 145.75440 * 26 2 1 47 47 H 1.09004 * 117.49592 * 359.97438 * 27 26 2 48 48 H 1.08991 * 117.50070 * 145.01943 * 27 26 2 49 49 H 1.09001 * 117.50027 * 214.97595 * 28 26 2 50 50 H 1.08999 * 117.49894 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6343 1.1567 0.1592 5 8 4.2207 0.1246 0.4240 6 7 4.3244 2.3050 0.0117 7 6 3.6181 3.5481 -0.3077 8 6 5.7807 2.3100 0.1709 9 6 6.4424 2.0379 -1.1816 10 1 6.0537 1.1076 -1.5957 11 8 6.1563 3.1141 -2.0771 12 6 7.9563 1.9194 -0.9939 13 7 8.5915 1.6576 -2.2923 14 6 10.0488 1.5380 -2.1508 15 6 10.6644 1.2709 -3.5002 16 8 9.9586 1.1887 -4.4832 17 7 11.9991 1.1233 -3.6147 18 6 12.5591 0.8808 -4.8424 19 1 11.9307 0.8076 -5.7176 20 6 13.9353 0.7293 -4.9606 21 7 14.4720 0.4963 -6.1372 22 14 15.0223 0.8566 -3.4468 23 1 15.1769 -0.4871 -2.8339 24 1 16.3565 1.3787 -3.8379 25 1 14.3979 1.7796 -2.4652 26 6 2.2605 -1.3051 0.0006 27 6 1.4384 -2.5955 -0.0009 28 6 2.1844 -2.1642 1.2643 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6379 2.0837 -0.1125 33 1 3.3328 4.0515 0.6160 34 1 4.2719 4.1985 -0.8889 35 1 2.7242 3.3193 -0.8880 36 1 6.1021 3.2826 0.5434 37 1 6.0714 1.5351 0.8800 38 1 6.4743 3.9748 -1.7718 39 1 8.3451 2.8497 -0.5799 40 1 8.1745 1.0984 -0.3109 41 1 8.2014 0.8345 -2.7264 42 1 10.4519 2.4661 -1.7453 43 1 10.2820 0.7150 -1.4754 44 1 12.5636 1.1895 -2.8286 45 1 15.4327 0.3901 -6.2196 46 1 3.1996 -1.3061 -0.5528 47 1 0.3525 -2.5005 -0.0019 48 1 1.8368 -3.4454 -0.5549 49 1 3.0732 -2.7307 1.5421 50 1 1.5896 -1.7853 2.0954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725689303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:14 Heat of formation + Delta-G solvation = -63.112834 kcal Electronic energy + Delta-G solvation = -28984.251468 eV Core-core repulsion = 24820.437999 eV Total energy + Delta-G solvation = -4163.813469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.42109 -38.69128 -38.28236 -37.49040 -35.47193 -34.73622 -33.80694 -33.75782 -31.64186 -30.85212 -28.66724 -27.67478 -26.55983 -25.09770 -23.68453 -22.92079 -22.55348 -21.84549 -20.28729 -19.35207 -18.46130 -18.33193 -17.57996 -16.89147 -16.50349 -16.08235 -15.97703 -15.50524 -15.35433 -14.95611 -14.88897 -14.52615 -14.25864 -13.86542 -13.64986 -13.59000 -13.40256 -13.15387 -13.14381 -13.09800 -12.67978 -12.63997 -12.59939 -12.09383 -12.01207 -11.85375 -11.80441 -11.62910 -11.59528 -11.16400 -11.13997 -11.04846 -10.66018 -10.57891 -10.32977 -9.94975 -9.71631 -9.54598 -9.26363 -8.74674 -8.52489 -8.16445 -8.08571 -6.28414 -3.79703 1.00145 2.72035 3.02392 3.04251 3.08292 3.16363 3.69208 3.77562 4.00173 4.12443 4.18766 4.26317 4.41778 4.59703 4.71359 4.73083 4.79482 4.82056 4.85355 4.89356 4.99437 5.04380 5.09653 5.12367 5.17286 5.23266 5.29665 5.32399 5.42683 5.44090 5.45249 5.54410 5.61731 5.65051 5.82849 5.84626 5.86256 5.95407 5.96459 6.00771 6.20508 6.27195 7.09397 7.14260 7.54511 7.61302 7.69869 8.00078 8.17599 8.62933 8.98015 9.45306 9.86270 10.84797 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.001832 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.775702 B =15278.021796 C =15977.130305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.000 4.000 3 C -0.231 4.231 4 C 0.546 3.454 5 O -0.535 6.535 6 N -0.607 5.607 7 C 0.081 3.919 8 C 0.086 3.914 9 C 0.098 3.902 10 H 0.099 0.901 11 O -0.540 6.540 12 C 0.029 3.971 13 N -0.658 5.658 14 C 0.048 3.952 15 C 0.450 3.550 16 O -0.562 6.562 17 N -0.592 5.592 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.040 3.960 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.118 4.118 27 C -0.190 4.190 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.368 0.632 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.352 0.648 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.131 0.869 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.096 3.596 20.477 34.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.002 4.002 3 C -0.251 4.251 4 C 0.337 3.663 5 O -0.414 6.414 6 N -0.340 5.340 7 C -0.062 4.062 8 C -0.037 4.037 9 C 0.037 3.963 10 H 0.117 0.883 11 O -0.344 6.344 12 C -0.102 4.102 13 N -0.291 5.291 14 C -0.085 4.085 15 C 0.236 3.764 16 O -0.443 6.443 17 N -0.232 5.232 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.707 3.293 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.136 4.136 27 C -0.227 4.227 28 C -0.191 4.191 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.214 0.786 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.172 0.828 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.149 0.851 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -27.316 3.157 19.281 33.584 hybrid contribution 1.525 -0.120 1.871 2.417 sum -25.790 3.037 21.152 33.493 Atomic orbital electron populations 1.21030 0.91087 1.03295 1.03187 1.21851 0.95248 0.93416 0.89647 1.22388 0.93387 0.98689 1.10657 1.18586 0.87933 0.82881 0.76859 1.90766 1.71207 1.31122 1.48329 1.47560 1.06847 1.08968 1.70605 1.21842 0.98036 0.86004 1.00329 1.22142 0.79946 1.03354 0.98299 1.22291 0.92677 0.91905 0.89419 0.88290 1.86679 1.81617 1.18000 1.48124 1.22608 0.94653 1.01227 0.91674 1.59957 1.02508 1.46228 1.20385 1.21725 0.89240 1.01062 0.96478 1.19710 0.82677 0.83951 0.90076 1.90578 1.60696 1.54139 1.38909 1.42204 1.06000 1.65357 1.09591 1.19439 0.91895 1.45669 0.86289 0.86286 1.25040 0.96591 0.97658 0.96946 1.69626 1.12215 1.48007 1.22370 0.86662 0.81155 0.78777 0.82726 1.19686 1.20182 1.19514 1.21416 1.00621 0.88053 1.03498 1.23166 0.98844 0.98510 1.02134 1.22802 1.02556 1.02496 0.91255 0.90098 0.90690 0.90951 0.85268 0.93001 0.90326 0.90912 0.90147 0.88970 0.78573 0.90760 0.94533 0.82825 0.89580 0.93876 0.79730 0.91650 0.85129 0.88621 0.88514 0.88467 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 9.53 36.01 0.34 -0.32 16 2 C 0.00 0.00 5.80 -101.17 -0.59 -0.59 16 3 C -0.23 -1.96 8.72 -37.81 -0.33 -2.29 16 4 C 0.55 5.99 7.52 -12.66 -0.10 5.89 16 5 O -0.54 -7.37 12.98 5.26 0.07 -7.30 16 6 N -0.61 -5.49 2.84 -182.98 -0.52 -6.01 16 7 C 0.08 0.49 9.92 59.85 0.59 1.08 16 8 C 0.09 0.76 5.07 -4.04 -0.02 0.74 16 9 C 0.10 1.08 3.42 -26.72 -0.09 0.99 16 10 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 11 O -0.54 -6.33 12.03 -35.23 -0.42 -6.76 16 12 C 0.03 0.34 5.35 -3.82 -0.02 0.32 16 13 N -0.66 -10.67 5.99 -115.05 -0.69 -11.36 16 14 C 0.05 0.82 6.17 -4.97 -0.03 0.78 16 15 C 0.45 10.57 7.82 -10.98 -0.09 10.48 16 16 O -0.56 -15.68 15.78 5.55 0.09 -15.59 16 17 N -0.59 -14.45 5.09 -10.96 -0.06 -14.50 16 18 C -0.30 -8.79 10.16 -14.93 -0.15 -8.95 16 19 H 0.12 3.93 7.39 -52.49 -0.39 3.55 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -26.15 13.96 55.50 0.77 -25.38 16 22 Si 0.88 19.65 27.74 -169.99 -4.71 14.94 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.27 -5.48 6.52 56.52 0.37 -5.12 16 26 C -0.12 -1.14 4.25 -91.77 -0.39 -1.53 16 27 C -0.19 -1.44 9.80 -26.69 -0.26 -1.70 16 28 C -0.15 -1.33 10.24 -26.69 -0.27 -1.60 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.34 6.30 -51.93 -0.33 0.01 16 31 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 32 H 0.13 0.77 6.37 -52.49 -0.33 0.43 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.44 7.11 -51.93 -0.37 0.07 16 35 H 0.07 0.39 6.21 -51.93 -0.32 0.07 16 36 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 37 H 0.09 0.90 7.42 -51.93 -0.39 0.52 16 38 H 0.37 3.01 9.04 45.56 0.41 3.42 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.35 6.21 8.43 -39.29 -0.33 5.87 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.13 1.61 6.40 -51.93 -0.33 1.28 16 47 H 0.10 0.57 6.27 -51.93 -0.33 0.24 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 408.97 15.07 6.16 6.16 Total: -1.00 -36.60 408.97 -7.98 -44.58 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -7.17 Total: 16.87 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.50 Total: 4.35 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.49 Total: -57.24 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.27 Total: -29.66 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.60 -7.98 -44.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725689303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.529 kcal (2) G-P(sol) polarization free energy of solvation -36.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds