Wall clock time and date at job start Tue Mar 31 2020 23:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 119.99998 * 2 1 4 4 C 1.47104 * 119.99748 * 172.82044 * 3 2 1 5 5 O 1.21616 * 120.00196 * 352.64751 * 4 3 2 6 6 N 1.34783 * 119.99767 * 172.65378 * 4 3 2 7 7 C 1.46497 * 119.99974 * 359.97438 * 6 4 3 8 8 C 1.46500 * 119.99699 * 179.97438 * 6 4 3 9 9 C 1.53006 * 109.46861 * 89.99947 * 8 6 4 10 10 H 1.08996 * 109.47315 * 304.99335 * 9 8 6 11 11 O 1.42894 * 109.47432 * 64.99885 * 9 8 6 12 12 C 1.53006 * 109.46651 * 184.99910 * 9 8 6 13 13 N 1.46899 * 109.46759 * 179.97438 * 12 9 8 14 14 C 1.46902 * 110.99737 * 179.97438 * 13 12 9 15 15 C 1.50708 * 109.47167 * 180.02562 * 14 13 12 16 16 O 1.21292 * 119.99803 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99931 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99773 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00116 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00148 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00318 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99806 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47249 * 90.00136 * 22 20 18 24 24 H 1.48506 * 109.47129 * 210.00144 * 22 20 18 25 25 H 1.48503 * 109.47012 * 329.99681 * 22 20 18 26 26 C 1.50699 * 120.00044 * 179.97438 * 2 1 3 27 27 C 1.53005 * 117.50012 * 0.08872 * 26 2 1 28 28 C 1.53000 * 117.49957 * 291.42828 * 26 2 1 29 29 H 1.09002 * 109.46591 * 90.00438 * 1 2 3 30 30 H 1.08996 * 109.47575 * 209.99898 * 1 2 3 31 31 H 1.08993 * 109.47005 * 330.00890 * 1 2 3 32 32 H 1.07998 * 120.00329 * 353.09166 * 3 2 1 33 33 H 1.08993 * 109.46864 * 90.00656 * 7 6 4 34 34 H 1.09006 * 109.47197 * 210.00546 * 7 6 4 35 35 H 1.09000 * 109.47075 * 329.99871 * 7 6 4 36 36 H 1.08996 * 109.47077 * 209.99266 * 8 6 4 37 37 H 1.08992 * 109.47546 * 329.99708 * 8 6 4 38 38 H 0.96701 * 113.99842 * 59.99982 * 11 9 8 39 39 H 1.08999 * 109.47248 * 299.99519 * 12 9 8 40 40 H 1.09000 * 109.47074 * 60.00076 * 12 9 8 41 41 H 1.00898 * 111.00436 * 303.95371 * 13 12 9 42 42 H 1.09004 * 109.47172 * 299.99886 * 14 13 12 43 43 H 1.08996 * 109.47436 * 60.00270 * 14 13 12 44 44 H 0.97002 * 120.00034 * 359.97438 * 17 15 14 45 45 H 0.97004 * 119.99836 * 180.02562 * 21 20 18 46 46 H 1.08999 * 115.55410 * 145.75440 * 26 2 1 47 47 H 1.09004 * 117.49592 * 359.97438 * 27 26 2 48 48 H 1.08991 * 117.50070 * 145.01943 * 27 26 2 49 49 H 1.09001 * 117.50027 * 214.97595 * 28 26 2 50 50 H 1.08999 * 117.49894 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6343 1.1567 0.1592 5 8 4.2207 0.1246 0.4240 6 7 4.3244 2.3050 0.0117 7 6 3.6181 3.5481 -0.3077 8 6 5.7807 2.3100 0.1709 9 6 6.4424 2.0379 -1.1816 10 1 6.0537 1.1076 -1.5957 11 8 6.1563 3.1141 -2.0771 12 6 7.9563 1.9194 -0.9939 13 7 8.5915 1.6576 -2.2923 14 6 10.0488 1.5380 -2.1508 15 6 10.6644 1.2709 -3.5002 16 8 9.9586 1.1887 -4.4832 17 7 11.9991 1.1233 -3.6147 18 6 12.5591 0.8808 -4.8424 19 1 11.9307 0.8076 -5.7176 20 6 13.9353 0.7293 -4.9606 21 7 14.4720 0.4963 -6.1372 22 14 15.0223 0.8566 -3.4468 23 1 15.1769 -0.4871 -2.8339 24 1 16.3565 1.3787 -3.8379 25 1 14.3979 1.7796 -2.4652 26 6 2.2605 -1.3051 0.0006 27 6 1.4384 -2.5955 -0.0009 28 6 2.1844 -2.1642 1.2643 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6379 2.0837 -0.1125 33 1 3.3328 4.0515 0.6160 34 1 4.2719 4.1985 -0.8889 35 1 2.7242 3.3193 -0.8880 36 1 6.1021 3.2826 0.5434 37 1 6.0714 1.5351 0.8800 38 1 6.4743 3.9748 -1.7718 39 1 8.3451 2.8497 -0.5799 40 1 8.1745 1.0984 -0.3109 41 1 8.2014 0.8345 -2.7264 42 1 10.4519 2.4661 -1.7453 43 1 10.2820 0.7150 -1.4754 44 1 12.5636 1.1895 -2.8286 45 1 15.4327 0.3901 -6.2196 46 1 3.1996 -1.3061 -0.5528 47 1 0.3525 -2.5005 -0.0019 48 1 1.8368 -3.4454 -0.5549 49 1 3.0732 -2.7307 1.5421 50 1 1.5896 -1.7853 2.0954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725689303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:13 Heat of formation + Delta-G solvation = -93.470512 kcal Electronic energy + Delta-G solvation = -28985.567875 eV Core-core repulsion = 24820.437999 eV Total energy + Delta-G solvation = -4165.129877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.16467 -40.34519 -39.23702 -38.35924 -36.48627 -36.02486 -35.57170 -34.35978 -33.76868 -31.75249 -29.50034 -28.58052 -27.43583 -26.43851 -24.91879 -23.83780 -23.21170 -22.75322 -21.32501 -20.97825 -20.29300 -19.12311 -18.37449 -17.96234 -17.36140 -17.32556 -17.07454 -16.80742 -16.36325 -16.15766 -16.05968 -15.67277 -15.29592 -14.98792 -14.86844 -14.54000 -14.48014 -14.32660 -14.08697 -13.96631 -13.74414 -13.64708 -13.27383 -13.21175 -13.13398 -13.02976 -12.75772 -12.56678 -12.47175 -12.43050 -12.19633 -12.02788 -11.98852 -11.69675 -11.53587 -11.36201 -11.16078 -10.50659 -10.45076 -10.27173 -9.91856 -9.41572 -9.33120 -8.42893 -6.04345 0.35665 1.29061 1.34714 1.43926 1.93140 2.05184 2.21964 2.30050 2.69865 3.03134 3.13104 3.29674 3.56099 3.62305 3.71499 3.84184 3.99557 4.05141 4.09834 4.13610 4.20641 4.22742 4.33802 4.37658 4.45014 4.46561 4.50354 4.63441 4.65378 4.71162 4.72412 4.79997 4.82649 4.94071 4.98819 5.04077 5.08627 5.21108 5.23990 5.42366 5.50376 5.55372 5.66254 5.87597 6.01628 6.25306 6.46080 6.57860 6.85905 6.96997 7.25386 7.37217 7.94432 8.74863 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.001832 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.775702 B =15278.021796 C =15977.130305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.000 4.000 3 C -0.243 4.243 4 C 0.530 3.470 5 O -0.576 6.576 6 N -0.608 5.608 7 C 0.076 3.924 8 C 0.093 3.907 9 C 0.108 3.892 10 H 0.061 0.939 11 O -0.559 6.559 12 C 0.034 3.966 13 N -0.679 5.679 14 C 0.063 3.937 15 C 0.446 3.554 16 O -0.616 6.616 17 N -0.589 5.589 18 C -0.331 4.331 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.230 1.230 26 C -0.138 4.138 27 C -0.173 4.173 28 C -0.158 4.158 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.385 0.615 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.337 0.663 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.390 0.610 45 H 0.280 0.720 46 H 0.094 0.906 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.835 5.396 24.398 37.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.002 4.002 3 C -0.263 4.263 4 C 0.323 3.677 5 O -0.458 6.458 6 N -0.339 5.339 7 C -0.066 4.066 8 C -0.031 4.031 9 C 0.047 3.953 10 H 0.079 0.921 11 O -0.366 6.366 12 C -0.096 4.096 13 N -0.310 5.310 14 C -0.070 4.070 15 C 0.234 3.766 16 O -0.501 6.501 17 N -0.231 5.231 18 C -0.461 4.461 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.575 5.575 22 Si 0.787 3.213 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.153 1.153 26 C -0.156 4.156 27 C -0.209 4.209 28 C -0.195 4.195 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.175 0.825 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.233 0.767 39 H 0.121 0.879 40 H 0.065 0.935 41 H 0.155 0.845 42 H 0.137 0.863 43 H 0.092 0.908 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.112 0.888 47 H 0.137 0.863 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -28.074 5.011 23.232 36.783 hybrid contribution 1.681 -0.694 0.512 1.889 sum -26.393 4.317 23.744 35.763 Atomic orbital electron populations 1.21092 0.88406 1.04577 1.04131 1.22146 0.96990 0.92402 0.88648 1.22572 0.92156 1.00093 1.11497 1.19155 0.89174 0.82839 0.76503 1.90746 1.72156 1.32596 1.50351 1.47711 1.07031 1.09501 1.69702 1.22049 0.98148 0.84779 1.01626 1.22082 0.79934 1.04709 0.96409 1.22077 0.92552 0.90449 0.90210 0.92095 1.86645 1.81956 1.19060 1.48897 1.22699 0.94445 1.02838 0.89596 1.59995 1.02250 1.45639 1.23151 1.21662 0.89424 1.03740 0.92148 1.21038 0.82059 0.81351 0.92161 1.90555 1.61920 1.55837 1.41762 1.42014 1.06760 1.65752 1.08606 1.19011 0.92204 1.48293 0.86546 0.92902 1.26162 0.97810 0.95950 1.01563 1.69812 1.13134 1.48681 1.25832 0.85329 0.78001 0.80212 0.77737 1.18197 1.19851 1.15299 1.21311 1.00198 0.90090 1.04051 1.23251 0.99865 0.97102 1.00726 1.22821 1.02594 1.02372 0.91734 0.89112 0.89856 0.89234 0.82525 0.90865 0.89733 0.90361 0.86702 0.90194 0.76650 0.87878 0.93544 0.84506 0.86268 0.90768 0.77385 0.91090 0.88787 0.86273 0.88696 0.89726 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.53 71.24 0.68 -0.29 16 2 C 0.00 0.00 5.80 -17.62 -0.10 -0.10 16 3 C -0.24 -3.95 8.72 23.43 0.20 -3.74 16 4 C 0.53 11.81 7.52 86.57 0.65 12.46 16 5 O -0.58 -16.91 12.98 -4.08 -0.05 -16.97 16 6 N -0.61 -10.41 2.84 -851.06 -2.41 -12.83 16 7 C 0.08 0.74 9.92 127.77 1.27 2.01 16 8 C 0.09 1.49 5.07 86.38 0.44 1.93 16 9 C 0.11 2.32 3.42 30.60 0.10 2.43 16 10 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 11 O -0.56 -12.55 12.03 -148.98 -1.79 -14.34 16 12 C 0.03 0.71 5.35 86.31 0.46 1.17 16 13 N -0.68 -21.33 5.99 -517.91 -3.10 -24.43 16 14 C 0.06 1.98 6.17 85.56 0.53 2.50 16 15 C 0.45 21.01 7.82 87.66 0.69 21.69 16 16 O -0.62 -36.03 15.78 -3.07 -0.05 -36.08 16 17 N -0.59 -28.61 5.09 -306.98 -1.56 -30.17 16 18 C -0.33 -19.95 10.16 84.04 0.85 -19.10 16 19 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 20 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 21 N -0.93 -57.27 13.96 21.66 0.30 -56.97 16 22 Si 0.97 39.29 27.74 68.60 1.90 41.19 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.23 -7.80 6.52 99.48 0.65 -7.16 16 26 C -0.14 -2.78 4.25 -11.54 -0.05 -2.83 16 27 C -0.17 -2.54 9.80 30.62 0.30 -2.24 16 28 C -0.16 -2.77 10.24 30.62 0.31 -2.46 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.51 6.30 -2.39 -0.02 0.50 16 31 H 0.09 0.41 8.07 -2.39 -0.02 0.39 16 32 H 0.16 1.52 6.37 -2.91 -0.02 1.50 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 0.74 7.11 -2.38 -0.02 0.72 16 35 H 0.08 0.68 6.21 -2.39 -0.01 0.67 16 36 H 0.11 1.05 8.07 -2.39 -0.02 1.03 16 37 H 0.08 1.52 7.42 -2.39 -0.02 1.50 16 38 H 0.38 5.42 9.04 -74.06 -0.67 4.75 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.34 12.20 8.43 -89.70 -0.76 11.45 16 42 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.39 15.54 5.76 -92.71 -0.53 15.00 16 45 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 46 H 0.09 2.60 6.40 -2.39 -0.02 2.58 16 47 H 0.12 1.17 6.27 -2.39 -0.01 1.15 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -88.72 408.97 -1.00 -89.72 By element: Atomic # 1 Polarization: 48.94 SS G_CDS: -1.04 Total: 47.90 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.80 Total: 12.98 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -6.78 Total: -124.40 kcal Atomic # 8 Polarization: -65.49 SS G_CDS: -1.89 Total: -67.39 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.19 kcal Total: -88.72 -1.00 -89.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725689303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.752 kcal (2) G-P(sol) polarization free energy of solvation -88.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds