Wall clock time and date at job start Tue Mar 31 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99965 * 2 1 4 4 C 1.50694 * 109.47370 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99393 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00460 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00253 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.46948 * 324.99487 * 7 6 4 9 9 C 1.50699 * 109.46748 * 204.99677 * 7 6 4 10 10 O 1.21276 * 120.00136 * 324.01969 * 9 7 6 11 11 N 1.34781 * 119.99589 * 144.02411 * 9 7 6 12 12 C 1.47868 * 126.94335 * 354.78863 * 11 9 7 13 13 C 1.56026 * 105.10088 * 182.02279 * 12 11 9 14 14 H 1.08996 * 116.24537 * 159.68057 * 13 12 11 15 15 C 1.57085 * 99.60629 * 32.80869 * 13 12 11 16 16 C 1.49286 * 126.94124 * 174.81362 * 11 9 7 17 17 H 1.09004 * 116.15654 * 15.82385 * 16 11 9 18 18 C 1.55994 * 104.31915 * 246.59432 * 16 11 9 19 19 N 1.47871 * 105.11364 * 289.11360 * 18 16 11 20 20 C 1.36936 * 126.94040 * 181.87181 * 19 18 16 21 21 H 1.08006 * 119.99371 * 179.41133 * 20 19 18 22 22 C 1.38804 * 120.00380 * 359.68987 * 20 19 18 23 23 N 1.31619 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00217 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46988 * 60.00013 * 24 22 20 26 26 H 1.48502 * 109.47161 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47182 * 300.00537 * 24 22 20 28 28 C 1.52995 * 109.47189 * 84.99494 * 7 6 4 29 29 C 1.52999 * 109.47243 * 181.93791 * 28 7 6 30 30 C 1.53002 * 109.47487 * 301.93940 * 28 7 6 31 31 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47531 * 300.00119 * 1 2 3 33 33 H 1.08999 * 109.47465 * 59.99979 * 1 2 3 34 34 H 1.08994 * 109.47038 * 59.99612 * 3 2 1 35 35 H 1.09007 * 109.46650 * 300.00247 * 3 2 1 36 36 H 0.97005 * 119.99555 * 359.97438 * 6 4 3 37 37 H 1.08997 * 110.31597 * 63.11802 * 12 11 9 38 38 H 1.09000 * 110.40251 * 300.97042 * 12 11 9 39 39 H 1.08999 * 112.36897 * 64.27030 * 15 13 12 40 40 H 1.08999 * 112.36802 * 191.71308 * 15 13 12 41 41 H 1.08998 * 110.41854 * 170.15074 * 18 16 11 42 42 H 1.08996 * 110.20227 * 47.96724 * 18 16 11 43 43 H 0.97006 * 120.00345 * 179.97438 * 23 22 20 44 44 H 1.09000 * 109.47182 * 61.93772 * 28 7 6 45 45 H 1.08996 * 109.46949 * 54.94241 * 29 28 7 46 46 H 1.08998 * 109.47608 * 174.94104 * 29 28 7 47 47 H 1.09000 * 109.46994 * 294.94610 * 29 28 7 48 48 H 1.09004 * 109.47346 * 59.99726 * 30 28 7 49 49 H 1.08999 * 109.47256 * 180.02562 * 30 28 7 50 50 H 1.09000 * 109.46772 * 300.00083 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0002 7 6 5.7369 2.1812 -0.0014 8 1 6.0330 1.3128 0.5871 9 6 6.3396 3.4248 0.5996 10 8 5.8239 4.5046 0.4030 11 7 7.4520 3.3367 1.3556 12 6 8.1420 2.1000 1.7809 13 6 9.3280 2.5823 2.6726 14 1 9.7500 1.8437 3.3541 15 6 8.6723 3.8578 3.3135 16 6 8.2360 4.4682 1.9333 17 1 7.7378 5.4375 1.9528 18 6 9.6032 4.4123 1.1842 19 7 10.2797 3.2054 1.7060 20 6 11.5291 2.7538 1.3738 21 1 11.9192 1.8577 1.8335 22 6 12.2964 3.4509 0.4508 23 7 11.8229 4.5456 -0.1057 24 14 14.0010 2.8352 -0.0017 25 1 13.8975 1.4708 -0.5787 26 1 14.6090 3.7507 -1.0004 27 1 14.8518 2.7949 1.2147 28 6 6.2343 2.0168 -1.4389 29 6 7.7549 1.8476 -1.4362 30 6 5.5848 0.7811 -2.0652 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.6885 1.8464 0.8899 35 1 1.6885 1.8464 -0.8900 36 1 3.8592 3.1726 0.0001 37 1 8.5173 1.5584 0.9126 38 1 7.4673 1.4677 2.3580 39 1 7.8196 3.6122 3.9465 40 1 9.3999 4.4822 3.8318 41 1 10.1937 5.3018 1.4037 42 1 9.4405 4.3206 0.1104 43 1 12.3593 5.0330 -0.7505 44 1 5.9681 2.9004 -2.0188 45 1 8.0269 1.0179 -0.7837 46 1 8.0993 1.6409 -2.4494 47 1 8.2217 2.7633 -1.0734 48 1 4.5014 0.9016 -2.0671 49 1 5.9395 0.6637 -3.0891 50 1 5.8510 -0.1026 -1.4852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732148961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:18 Heat of formation + Delta-G solvation = -53.225665 kcal Electronic energy + Delta-G solvation = -31763.074282 eV Core-core repulsion = 27599.689553 eV Total energy + Delta-G solvation = -4163.384729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.76444 -39.78407 -38.31298 -37.52119 -35.71959 -33.76960 -33.37766 -31.59659 -29.59852 -29.15987 -28.61526 -27.19392 -26.79309 -25.65010 -25.14809 -23.44296 -21.30107 -20.88385 -19.93845 -19.87801 -18.65491 -17.89074 -17.14194 -16.78681 -16.62991 -16.36545 -15.82863 -15.54325 -15.46220 -14.85841 -14.66984 -14.53646 -14.04950 -13.58454 -13.36679 -13.31296 -13.09909 -12.68851 -12.46498 -12.38584 -12.21565 -12.04660 -11.83870 -11.77622 -11.62930 -11.43623 -11.36654 -11.05275 -10.91663 -10.86951 -10.78788 -10.63246 -10.61413 -10.25055 -10.13273 -10.10140 -9.86090 -9.68772 -9.60437 -9.05515 -8.72607 -8.09214 -6.96397 -5.79871 -3.14196 2.42731 2.48947 2.87390 3.33953 3.36273 3.40977 3.42323 3.85572 4.39539 4.49952 4.61621 4.78060 4.81009 4.92405 4.98002 5.02783 5.03886 5.06433 5.15033 5.30927 5.32108 5.38157 5.47256 5.52906 5.59111 5.71449 5.76450 5.89491 5.90504 6.02597 6.08742 6.19275 6.20574 6.24215 6.29172 6.35060 6.41227 6.54846 6.55213 6.59524 6.65060 6.69984 7.36574 7.38159 7.42886 7.67949 7.94693 8.06360 8.10290 8.38401 9.07174 9.68073 10.36511 11.32141 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.003013 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.309479 B = 9290.965755 C = 9840.755303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.044 3.956 4 C 0.515 3.485 5 O -0.512 6.512 6 N -0.713 5.713 7 C 0.140 3.860 8 H 0.106 0.894 9 C 0.529 3.471 10 O -0.556 6.556 11 N -0.596 5.596 12 C 0.072 3.928 13 C 0.142 3.858 14 H 0.107 0.893 15 C -0.150 4.150 16 C 0.097 3.903 17 H 0.114 0.886 18 C 0.175 3.825 19 N -0.595 5.595 20 C -0.231 4.231 21 H 0.080 0.920 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.095 4.095 29 C -0.150 4.150 30 C -0.134 4.134 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.408 0.592 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.049 0.951 49 H 0.050 0.950 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.794 -4.398 1.628 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.036 4.036 4 C 0.300 3.700 5 O -0.386 6.386 6 N -0.368 5.368 7 C 0.032 3.968 8 H 0.123 0.877 9 C 0.316 3.684 10 O -0.435 6.435 11 N -0.328 5.328 12 C -0.053 4.053 13 C 0.033 3.967 14 H 0.125 0.875 15 C -0.190 4.190 16 C -0.006 4.006 17 H 0.132 0.868 18 C 0.050 3.950 19 N -0.319 5.319 20 C -0.359 4.359 21 H 0.098 0.902 22 C -0.201 4.201 23 N -0.566 5.566 24 Si 0.742 3.258 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.115 4.115 29 C -0.207 4.207 30 C -0.192 4.192 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.244 0.756 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.415 -4.737 1.293 19.059 hybrid contribution 0.480 0.450 -0.406 0.773 sum -17.935 -4.287 0.887 18.462 Atomic orbital electron populations 1.22841 0.80394 1.03311 1.00133 1.88019 1.19739 1.25121 1.95431 1.22213 0.91588 0.87015 1.02789 1.20127 0.88546 0.84565 0.76779 1.90753 1.74290 1.26306 1.47283 1.45657 1.05819 1.09442 1.75865 1.20947 0.80004 0.97601 0.98258 0.87661 1.19949 0.80040 0.90061 0.78303 1.90648 1.61755 1.29591 1.61506 1.49153 1.24866 1.09849 1.48942 1.23558 0.95172 0.86301 1.00248 1.23174 0.88500 0.94036 0.91000 0.87497 1.24150 0.99949 0.99375 0.95529 1.24398 0.92485 0.90016 0.93671 0.86805 1.21933 0.86479 0.90540 0.96084 1.45215 1.14150 1.26112 1.46467 1.18987 0.89561 1.07420 1.19951 0.90213 1.24788 0.98647 0.97401 0.99224 1.69893 1.37001 1.17869 1.31817 0.86217 0.83924 0.77792 0.77900 1.21125 1.21663 1.21154 1.21421 0.96948 0.99771 0.93391 1.21940 0.93065 1.03319 1.02409 1.21860 0.99867 0.97446 0.99998 0.89075 0.93803 0.93799 0.90140 0.90138 0.75624 0.90030 0.92718 0.91669 0.89686 0.92609 0.93306 0.93542 0.90664 0.92068 0.92166 0.91159 0.93244 0.93057 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.09 10.24 -55.14 -0.56 -4.65 16 3 C 0.04 0.41 6.42 36.00 0.23 0.64 16 4 C 0.51 6.56 6.19 -10.99 -0.07 6.49 16 5 O -0.51 -8.39 13.63 -14.36 -0.20 -8.59 16 6 N -0.71 -8.89 4.92 -54.93 -0.27 -9.16 16 7 C 0.14 2.06 1.99 -69.08 -0.14 1.93 16 8 H 0.11 1.63 6.48 -51.93 -0.34 1.30 16 9 C 0.53 9.05 6.06 -10.98 -0.07 8.98 16 10 O -0.56 -10.62 16.58 5.56 0.09 -10.53 16 11 N -0.60 -10.35 2.53 -156.79 -0.40 -10.75 16 12 C 0.07 1.20 5.26 -1.67 -0.01 1.19 16 13 C 0.14 2.53 5.53 -62.55 -0.35 2.18 16 14 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 15 C -0.15 -2.44 6.80 -22.29 -0.15 -2.59 16 16 C 0.10 1.77 5.25 -62.56 -0.33 1.44 16 17 H 0.11 2.04 8.03 -51.93 -0.42 1.62 16 18 C 0.17 3.97 4.77 -1.69 -0.01 3.96 16 19 N -0.60 -13.61 3.02 -156.36 -0.47 -14.09 16 20 C -0.23 -5.93 10.37 -15.06 -0.16 -6.09 16 21 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 22 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 23 N -0.92 -25.88 10.56 55.49 0.59 -25.29 16 24 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C -0.10 -1.40 2.67 -90.62 -0.24 -1.64 16 29 C -0.15 -2.42 7.76 37.16 0.29 -2.13 16 30 C -0.13 -1.86 7.70 37.16 0.29 -1.57 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.41 4.51 7.95 -40.82 -0.32 4.18 16 37 H 0.08 1.46 5.52 -51.93 -0.29 1.18 16 38 H 0.05 0.78 8.00 -51.93 -0.42 0.37 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.06 1.42 7.48 -51.93 -0.39 1.03 16 42 H 0.05 1.27 7.30 -51.93 -0.38 0.89 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.98 6.56 -51.93 -0.34 0.64 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 1.35 6.80 -51.93 -0.35 1.00 16 48 H 0.05 0.68 5.83 -51.93 -0.30 0.37 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 1.00 7.40 -51.93 -0.38 0.62 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -32.06 388.66 -8.20 -40.26 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.12 Total: 6.75 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 0.31 Total: 13.90 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.55 Total: -59.29 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.67 Total: -23.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.06 -8.20 -40.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732148961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.967 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds