Wall clock time and date at job start Tue Mar 31 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99965 * 2 1 4 4 C 1.50694 * 109.47370 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99393 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00460 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00253 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.46948 * 324.99487 * 7 6 4 9 9 C 1.50699 * 109.46748 * 204.99677 * 7 6 4 10 10 O 1.21276 * 120.00136 * 324.01969 * 9 7 6 11 11 N 1.34781 * 119.99589 * 144.02411 * 9 7 6 12 12 C 1.47868 * 126.94335 * 354.78863 * 11 9 7 13 13 C 1.56026 * 105.10088 * 182.02279 * 12 11 9 14 14 H 1.08996 * 116.24537 * 159.68057 * 13 12 11 15 15 C 1.57085 * 99.60629 * 32.80869 * 13 12 11 16 16 C 1.49286 * 126.94124 * 174.81362 * 11 9 7 17 17 H 1.09004 * 116.15654 * 15.82385 * 16 11 9 18 18 C 1.55994 * 104.31915 * 246.59432 * 16 11 9 19 19 N 1.47871 * 105.11364 * 289.11360 * 18 16 11 20 20 C 1.36936 * 126.94040 * 181.87181 * 19 18 16 21 21 H 1.08006 * 119.99371 * 179.41133 * 20 19 18 22 22 C 1.38804 * 120.00380 * 359.68987 * 20 19 18 23 23 N 1.31619 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00217 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46988 * 60.00013 * 24 22 20 26 26 H 1.48502 * 109.47161 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47182 * 300.00537 * 24 22 20 28 28 C 1.52995 * 109.47189 * 84.99494 * 7 6 4 29 29 C 1.52999 * 109.47243 * 181.93791 * 28 7 6 30 30 C 1.53002 * 109.47487 * 301.93940 * 28 7 6 31 31 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47531 * 300.00119 * 1 2 3 33 33 H 1.08999 * 109.47465 * 59.99979 * 1 2 3 34 34 H 1.08994 * 109.47038 * 59.99612 * 3 2 1 35 35 H 1.09007 * 109.46650 * 300.00247 * 3 2 1 36 36 H 0.97005 * 119.99555 * 359.97438 * 6 4 3 37 37 H 1.08997 * 110.31597 * 63.11802 * 12 11 9 38 38 H 1.09000 * 110.40251 * 300.97042 * 12 11 9 39 39 H 1.08999 * 112.36897 * 64.27030 * 15 13 12 40 40 H 1.08999 * 112.36802 * 191.71308 * 15 13 12 41 41 H 1.08998 * 110.41854 * 170.15074 * 18 16 11 42 42 H 1.08996 * 110.20227 * 47.96724 * 18 16 11 43 43 H 0.97006 * 120.00345 * 179.97438 * 23 22 20 44 44 H 1.09000 * 109.47182 * 61.93772 * 28 7 6 45 45 H 1.08996 * 109.46949 * 54.94241 * 29 28 7 46 46 H 1.08998 * 109.47608 * 174.94104 * 29 28 7 47 47 H 1.09000 * 109.46994 * 294.94610 * 29 28 7 48 48 H 1.09004 * 109.47346 * 59.99726 * 30 28 7 49 49 H 1.08999 * 109.47256 * 180.02562 * 30 28 7 50 50 H 1.09000 * 109.46772 * 300.00083 * 30 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0002 7 6 5.7369 2.1812 -0.0014 8 1 6.0330 1.3128 0.5871 9 6 6.3396 3.4248 0.5996 10 8 5.8239 4.5046 0.4030 11 7 7.4520 3.3367 1.3556 12 6 8.1420 2.1000 1.7809 13 6 9.3280 2.5823 2.6726 14 1 9.7500 1.8437 3.3541 15 6 8.6723 3.8578 3.3135 16 6 8.2360 4.4682 1.9333 17 1 7.7378 5.4375 1.9528 18 6 9.6032 4.4123 1.1842 19 7 10.2797 3.2054 1.7060 20 6 11.5291 2.7538 1.3738 21 1 11.9192 1.8577 1.8335 22 6 12.2964 3.4509 0.4508 23 7 11.8229 4.5456 -0.1057 24 14 14.0010 2.8352 -0.0017 25 1 13.8975 1.4708 -0.5787 26 1 14.6090 3.7507 -1.0004 27 1 14.8518 2.7949 1.2147 28 6 6.2343 2.0168 -1.4389 29 6 7.7549 1.8476 -1.4362 30 6 5.5848 0.7811 -2.0652 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.6885 1.8464 0.8899 35 1 1.6885 1.8464 -0.8900 36 1 3.8592 3.1726 0.0001 37 1 8.5173 1.5584 0.9126 38 1 7.4673 1.4677 2.3580 39 1 7.8196 3.6122 3.9465 40 1 9.3999 4.4822 3.8318 41 1 10.1937 5.3018 1.4037 42 1 9.4405 4.3206 0.1104 43 1 12.3593 5.0330 -0.7505 44 1 5.9681 2.9004 -2.0188 45 1 8.0269 1.0179 -0.7837 46 1 8.0993 1.6409 -2.4494 47 1 8.2217 2.7633 -1.0734 48 1 4.5014 0.9016 -2.0671 49 1 5.9395 0.6637 -3.0891 50 1 5.8510 -0.1026 -1.4852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732148961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:17 Heat of formation + Delta-G solvation = -74.746192 kcal Electronic energy + Delta-G solvation = -31764.007482 eV Core-core repulsion = 27599.689553 eV Total energy + Delta-G solvation = -4164.317929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.06419 -41.00319 -39.56423 -38.41567 -36.95343 -35.47385 -34.56683 -33.28724 -30.95738 -30.31224 -30.18159 -28.32360 -27.86613 -26.92833 -26.39443 -25.06530 -22.74201 -21.91721 -21.46685 -21.18372 -20.08612 -19.22977 -18.37797 -18.02482 -17.66130 -17.43847 -17.20866 -16.74321 -16.52629 -16.35024 -15.78139 -15.71248 -15.64586 -15.14723 -14.72631 -14.35981 -14.14969 -13.91705 -13.83476 -13.73373 -13.58183 -13.30042 -13.18138 -13.09682 -12.95568 -12.85045 -12.68505 -12.61232 -12.33744 -12.30209 -12.18370 -12.13732 -12.04843 -11.96989 -11.70026 -11.50069 -11.03364 -10.88572 -10.74052 -10.67921 -10.18075 -9.57053 -8.87534 -7.81815 -5.16231 1.32109 1.48381 1.49830 1.52478 1.55597 1.56488 2.14891 2.50110 3.10954 3.25017 3.35943 3.47146 3.64704 3.70575 3.79291 3.80808 3.89615 4.03026 4.13159 4.19100 4.21786 4.26992 4.27338 4.49450 4.53690 4.57412 4.60143 4.66269 4.69454 4.79726 4.82565 4.88175 4.90029 4.95869 5.01683 5.04104 5.13257 5.14659 5.23968 5.30945 5.36639 5.47488 5.56005 5.70351 6.03410 6.12892 6.44719 6.55470 6.97878 7.06708 7.13916 7.74010 8.44086 9.28816 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.003013 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.309479 B = 9290.965755 C = 9840.755303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.047 3.953 4 C 0.513 3.487 5 O -0.552 6.552 6 N -0.705 5.705 7 C 0.150 3.850 8 H 0.102 0.898 9 C 0.529 3.471 10 O -0.577 6.577 11 N -0.597 5.597 12 C 0.079 3.921 13 C 0.136 3.864 14 H 0.132 0.868 15 C -0.129 4.129 16 C 0.102 3.898 17 H 0.119 0.881 18 C 0.188 3.812 19 N -0.613 5.613 20 C -0.227 4.227 21 H 0.092 0.908 22 C -0.065 4.065 23 N -0.953 5.953 24 Si 0.971 3.029 25 H -0.279 1.279 26 H -0.303 1.303 27 H -0.276 1.276 28 C -0.089 4.089 29 C -0.140 4.140 30 C -0.123 4.123 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.417 0.583 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.018 0.982 42 H 0.004 0.996 43 H 0.243 0.757 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.968 -5.721 2.953 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.032 4.032 4 C 0.301 3.699 5 O -0.429 6.429 6 N -0.361 5.361 7 C 0.041 3.959 8 H 0.120 0.880 9 C 0.317 3.683 10 O -0.457 6.457 11 N -0.329 5.329 12 C -0.045 4.045 13 C 0.029 3.971 14 H 0.150 0.850 15 C -0.168 4.168 16 C -0.001 4.001 17 H 0.137 0.863 18 C 0.063 3.937 19 N -0.337 5.337 20 C -0.356 4.356 21 H 0.110 0.890 22 C -0.258 4.258 23 N -0.602 5.602 24 Si 0.800 3.200 25 H -0.205 1.205 26 H -0.230 1.230 27 H -0.202 1.202 28 C -0.109 4.109 29 C -0.198 4.198 30 C -0.180 4.180 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.254 0.746 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.037 0.963 42 H 0.022 0.978 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.633 -6.085 2.658 21.676 hybrid contribution 1.100 0.839 -0.808 1.602 sum -19.534 -5.246 1.850 20.310 Atomic orbital electron populations 1.23036 0.78278 1.04181 1.01620 1.87962 1.22092 1.26326 1.95793 1.22309 0.88551 0.86975 1.05375 1.20838 0.90105 0.83656 0.75332 1.90737 1.75290 1.27711 1.49144 1.45601 1.04670 1.10150 1.75659 1.20725 0.81511 0.95934 0.97733 0.88003 1.20339 0.79774 0.90535 0.77620 1.90634 1.62493 1.30617 1.62000 1.49170 1.24873 1.09734 1.49139 1.23443 0.95301 0.86067 0.99727 1.23561 0.87686 0.95169 0.90664 0.85005 1.24046 1.00744 0.97674 0.94319 1.24229 0.90245 0.91074 0.94569 0.86343 1.21535 0.88605 0.89397 0.94211 1.45424 1.14235 1.26504 1.47543 1.19423 0.90460 1.07057 1.18692 0.89044 1.25536 1.02047 0.98035 1.00201 1.70122 1.37877 1.19381 1.32801 0.85263 0.80321 0.77005 0.77408 1.20510 1.23017 1.20210 1.21352 0.95742 1.00177 0.93608 1.21819 0.94130 1.01347 1.02476 1.21737 0.99846 0.96128 1.00269 0.88672 0.92283 0.92270 0.87429 0.87369 0.74581 0.91702 0.89219 0.88166 0.89904 0.96347 0.97766 0.94769 0.91001 0.92020 0.91656 0.94744 0.92941 0.91916 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.51 16 2 O -0.40 -8.13 10.24 -129.94 -1.33 -9.46 16 3 C 0.05 0.73 6.42 71.23 0.46 1.19 16 4 C 0.51 12.05 6.19 87.66 0.54 12.59 16 5 O -0.55 -17.41 13.63 15.99 0.22 -17.19 16 6 N -0.71 -16.28 4.92 -446.10 -2.19 -18.48 16 7 C 0.15 4.26 1.99 44.24 0.09 4.35 16 8 H 0.10 3.02 6.48 -2.39 -0.02 3.00 16 9 C 0.53 17.70 6.06 87.66 0.53 18.23 16 10 O -0.58 -21.70 16.58 -3.02 -0.05 -21.75 16 11 N -0.60 -20.29 2.53 -768.35 -1.94 -22.23 16 12 C 0.08 2.48 5.26 87.17 0.46 2.94 16 13 C 0.14 4.57 5.53 46.94 0.26 4.83 16 14 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 15 C -0.13 -3.87 6.80 33.47 0.23 -3.64 16 16 C 0.10 3.71 5.25 46.93 0.25 3.96 16 17 H 0.12 4.22 8.03 -2.39 -0.02 4.20 16 18 C 0.19 8.94 4.77 87.15 0.42 9.35 16 19 N -0.61 -28.26 3.02 -648.60 -1.96 -30.21 16 20 C -0.23 -11.74 10.37 84.03 0.87 -10.87 16 21 H 0.09 4.41 7.83 -2.91 -0.02 4.38 16 22 C -0.07 -3.58 5.49 84.86 0.47 -3.11 16 23 N -0.95 -56.37 10.56 21.65 0.23 -56.14 16 24 Si 0.97 44.72 29.55 68.60 2.03 46.75 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 28 C -0.09 -2.56 2.67 -10.79 -0.03 -2.59 16 29 C -0.14 -4.62 7.76 71.98 0.56 -4.06 16 30 C -0.12 -3.25 7.70 71.98 0.55 -2.70 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.07 8.14 -2.38 -0.02 1.06 16 36 H 0.42 8.30 7.95 -92.70 -0.74 7.57 16 37 H 0.06 2.29 5.52 -2.39 -0.01 2.28 16 38 H 0.09 2.26 8.00 -2.39 -0.02 2.24 16 39 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.02 0.99 7.48 -2.39 -0.02 0.98 16 42 H 0.00 0.23 7.30 -2.39 -0.02 0.22 16 43 H 0.24 14.31 8.31 -92.70 -0.77 13.54 16 44 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 1.99 6.56 -2.39 -0.02 1.98 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.03 1.38 6.80 -2.39 -0.02 1.36 16 48 H 0.05 1.36 5.83 -2.39 -0.01 1.35 16 49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.05 1.61 7.40 -2.39 -0.02 1.59 16 Total: -1.00 -72.92 388.66 2.11 -70.82 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.21 Total: 25.92 kcal Atomic # 6 Polarization: 25.07 SS G_CDS: 6.90 Total: 31.97 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -5.86 Total: -127.06 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -1.16 Total: -48.39 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.92 2.11 -70.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732148961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.930 kcal (2) G-P(sol) polarization free energy of solvation -72.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds