Wall clock time and date at job start Tue Mar 31 2020 23:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 H 1.08999 * 110.67648 * 52.03766 * 3 2 1 5 5 O 1.44378 * 110.61369 * 289.06898 * 3 2 1 6 6 C 1.43746 * 106.97291 * 201.43898 * 5 3 2 7 7 C 1.54101 * 107.29437 * 26.51703 * 6 5 3 8 8 C 1.54812 * 104.18800 * 357.96737 * 7 6 5 9 9 H 1.09000 * 110.90564 * 97.34878 * 8 7 6 10 10 C 1.50697 * 110.91000 * 220.92317 * 8 7 6 11 11 O 1.21274 * 119.99995 * 118.54784 * 10 8 7 12 12 N 1.34773 * 119.99720 * 298.54418 * 10 8 7 13 13 C 1.46501 * 120.00035 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47444 * 180.02562 * 13 12 10 15 15 H 1.08993 * 112.78741 * 75.80744 * 14 13 12 16 16 C 1.53512 * 113.47548 * 206.61790 * 14 13 12 17 17 C 1.53520 * 83.57432 * 140.78790 * 16 14 13 18 18 N 1.47478 * 113.47264 * 305.00079 * 14 13 12 19 19 C 1.46896 * 110.99952 * 106.53175 * 18 14 13 20 20 C 1.50700 * 109.46942 * 187.49458 * 19 18 14 21 21 O 1.21293 * 120.00282 * 359.97438 * 20 19 18 22 22 N 1.34777 * 120.00075 * 179.97438 * 20 19 18 23 23 C 1.37104 * 120.00173 * 180.02562 * 22 20 19 24 24 H 1.08002 * 119.99666 * 359.97438 * 23 22 20 25 25 C 1.38945 * 120.00001 * 180.27893 * 23 22 20 26 26 N 1.31414 * 119.99893 * 359.72318 * 25 23 22 27 27 Si 1.86801 * 119.99957 * 179.72309 * 25 23 22 28 28 H 1.48501 * 109.46896 * 89.99808 * 27 25 23 29 29 H 1.48504 * 109.46757 * 209.99794 * 27 25 23 30 30 H 1.48492 * 109.47185 * 329.99590 * 27 25 23 31 31 H 1.08998 * 109.47205 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47122 * 300.00479 * 1 2 3 33 33 H 1.08995 * 109.47271 * 59.99800 * 1 2 3 34 34 H 1.09002 * 109.47122 * 239.99521 * 2 1 3 35 35 H 1.08999 * 109.46921 * 119.99851 * 2 1 3 36 36 H 1.08996 * 109.87941 * 267.09178 * 6 5 3 37 37 H 1.08998 * 110.00320 * 146.01054 * 6 5 3 38 38 H 1.08998 * 110.48617 * 239.29628 * 7 6 5 39 39 H 1.08998 * 110.49057 * 116.64908 * 7 6 5 40 40 H 0.97001 * 120.00464 * 0.02562 * 12 10 8 41 41 H 1.09005 * 109.47189 * 59.99778 * 13 12 10 42 42 H 1.09000 * 109.47173 * 300.00248 * 13 12 10 43 43 H 1.08998 * 114.17201 * 27.14537 * 16 14 13 44 44 H 1.08994 * 114.34788 * 254.45130 * 16 14 13 45 45 H 1.09002 * 113.47591 * 219.21000 * 17 16 14 46 46 H 1.09000 * 113.52537 * 88.74874 * 17 16 14 47 47 H 1.08994 * 109.47346 * 67.49764 * 19 18 14 48 48 H 1.08998 * 109.47279 * 307.49436 * 19 18 14 49 49 H 0.97000 * 120.00140 * 0.02562 * 22 20 19 50 50 H 0.97004 * 119.99542 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5769 2.0145 0.8040 5 8 1.7932 2.0689 -1.2772 6 6 2.7073 3.1729 -1.3867 7 6 3.9334 2.8408 -0.5143 8 6 3.5845 1.4753 0.1264 9 1 4.0384 0.6565 -0.4317 10 6 4.0066 1.4362 1.5725 11 8 3.1764 1.2796 2.4426 12 7 5.3068 1.5752 1.8989 13 6 5.7172 1.5378 3.3048 14 6 7.2336 1.7184 3.3985 15 1 7.5465 2.7503 3.2392 16 6 7.8494 1.0790 4.6509 17 6 8.9799 0.6922 3.6869 18 7 7.9922 0.7435 2.5928 19 6 8.5631 1.3790 1.3977 20 6 9.1706 0.3239 0.5096 21 8 9.1323 -0.8425 0.8398 22 7 9.7566 0.6765 -0.6518 23 6 10.3089 -0.2834 -1.4602 24 1 10.2747 -1.3220 -1.1660 25 6 10.9181 0.0807 -2.6547 26 7 10.9601 1.3446 -3.0123 27 14 11.6773 -1.2263 -3.7522 28 1 10.6571 -1.7211 -4.7112 29 1 12.8185 -0.6416 -4.5014 30 1 12.1600 -2.3550 -2.9167 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2319 4.0850 -1.0261 37 1 3.0147 3.3008 -2.4246 38 1 4.0702 3.5997 0.2560 39 1 4.8284 2.7556 -1.1305 40 1 5.9709 1.7008 1.2031 41 1 5.4377 0.5780 3.7395 42 1 5.2216 2.3414 3.8495 43 1 7.2867 0.2313 5.0418 44 1 8.1439 1.7920 5.4209 45 1 9.3795 -0.3063 3.8647 46 1 9.7593 1.4496 3.6041 47 1 9.3334 2.0896 1.6969 48 1 7.7769 1.9028 0.8541 49 1 9.7876 1.6094 -0.9159 50 1 11.3850 1.5987 -3.8464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733222140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:15 Heat of formation + Delta-G solvation = -88.469334 kcal Electronic energy + Delta-G solvation = -30453.920524 eV Core-core repulsion = 26289.007515 eV Total energy + Delta-G solvation = -4164.913009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.78360 -40.19699 -38.52214 -37.80685 -34.66394 -33.96523 -33.62864 -32.56144 -31.44149 -30.72417 -28.88237 -28.09305 -25.90072 -24.36920 -23.82821 -23.11405 -22.28103 -21.17926 -20.32059 -19.68141 -19.35483 -17.97320 -17.73568 -16.55712 -16.30445 -16.06533 -15.88842 -15.61906 -15.19021 -15.08304 -14.80812 -14.55925 -14.09804 -13.89621 -13.76788 -13.74318 -13.60169 -13.28847 -13.15678 -12.87979 -12.50557 -12.34763 -11.98618 -11.78516 -11.67211 -11.60374 -11.59613 -11.39263 -11.12481 -11.03865 -10.95271 -10.93161 -10.80806 -10.58509 -10.43582 -10.26669 -9.94061 -9.71086 -9.55577 -9.09437 -8.89520 -8.29399 -8.02218 -6.47420 -3.88280 2.55182 3.02233 3.13980 3.23251 3.28811 3.64893 3.80525 3.87275 4.16733 4.28359 4.35700 4.44521 4.57762 4.67693 4.79912 4.91129 4.92167 5.00150 5.04231 5.08010 5.13295 5.23378 5.25501 5.31814 5.35849 5.38244 5.51938 5.54477 5.54571 5.59117 5.67055 5.70457 5.78455 5.80673 5.83181 5.89830 5.93089 6.06240 6.11105 6.16608 6.22583 6.32555 6.48814 6.74273 7.08388 7.42663 7.50024 7.99881 8.13772 8.55463 9.12866 9.47603 9.99721 10.70233 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008460 B = 0.003319 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.064700 B = 8435.475659 C =10698.568864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.101 3.899 4 H 0.082 0.918 5 O -0.371 6.371 6 C 0.050 3.950 7 C -0.149 4.149 8 C -0.146 4.146 9 H 0.116 0.884 10 C 0.527 3.473 11 O -0.543 6.543 12 N -0.717 5.717 13 C 0.141 3.859 14 C 0.003 3.997 15 H 0.082 0.918 16 C -0.133 4.133 17 C 0.005 3.995 18 N -0.433 5.433 19 C 0.008 3.992 20 C 0.444 3.556 21 O -0.572 6.572 22 N -0.565 5.565 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.277 1.277 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.402 0.598 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.391 0.609 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.752 7.335 8.950 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.043 3.957 4 H 0.100 0.900 5 O -0.291 6.291 6 C -0.027 4.027 7 C -0.187 4.187 8 C -0.168 4.168 9 H 0.134 0.866 10 C 0.313 3.687 11 O -0.420 6.420 12 N -0.369 5.369 13 C 0.017 3.983 14 C -0.107 4.107 15 H 0.100 0.900 16 C -0.171 4.171 17 C -0.124 4.124 18 N -0.155 5.155 19 C -0.125 4.125 20 C 0.229 3.771 21 O -0.455 6.455 22 N -0.203 5.203 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.178 4.178 26 N -0.544 5.544 27 Si 0.756 3.244 28 H -0.203 1.203 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.238 0.762 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.097 0.903 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.739 5.841 9.187 17.530 hybrid contribution 1.624 1.038 -0.960 2.153 sum -12.115 6.879 8.226 16.179 Atomic orbital electron populations 1.21696 0.95167 1.01554 1.02037 1.21554 0.96829 0.93983 1.03050 1.22983 0.91153 0.95264 0.86320 0.90003 1.88893 1.58342 1.45021 1.36806 1.23097 0.88791 0.90108 1.00709 1.22960 1.00274 0.95556 0.99911 1.22986 0.99022 1.00605 0.94190 0.86587 1.20156 0.82335 0.75861 0.90319 1.90685 1.51400 1.49381 1.50569 1.45961 1.08096 1.73537 1.09346 1.21326 0.92429 1.02425 0.82148 1.23781 0.94460 0.96751 0.95712 0.89990 1.23156 0.97743 1.00969 0.95274 1.23740 0.94608 1.03052 0.90957 1.68869 1.13544 1.32569 1.00530 1.22564 0.99075 0.96541 0.94291 1.19595 0.84538 0.89451 0.83518 1.90544 1.61972 1.19072 1.73901 1.41872 1.50537 1.10223 1.17628 1.19689 1.32263 0.91055 0.99831 0.87957 1.25242 0.97755 0.97014 0.97822 1.69606 1.44821 1.15663 1.24272 0.85873 0.78545 0.80276 0.79718 1.20340 1.20914 1.19415 0.92715 0.92770 0.92261 0.91095 0.90125 0.92269 0.89360 0.90264 0.89120 0.76194 0.90692 0.91289 0.88554 0.90417 0.89111 0.91376 0.92096 0.90284 0.77626 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.86 37.16 0.37 -1.14 16 2 C -0.12 -1.34 5.69 -26.73 -0.15 -1.50 16 3 C 0.10 1.21 2.34 -25.67 -0.06 1.15 16 4 H 0.08 1.05 7.53 -51.93 -0.39 0.65 16 5 O -0.37 -4.57 11.08 -35.23 -0.39 -4.96 16 6 C 0.05 0.49 7.70 37.73 0.29 0.78 16 7 C -0.15 -1.44 6.55 -25.20 -0.16 -1.60 16 8 C -0.15 -1.71 2.95 -89.76 -0.26 -1.97 16 9 H 0.12 1.38 8.06 -51.93 -0.42 0.96 16 10 C 0.53 7.01 7.05 -10.99 -0.08 6.93 16 11 O -0.54 -8.61 15.70 5.56 0.09 -8.52 16 12 N -0.72 -8.83 5.41 -60.29 -0.33 -9.16 16 13 C 0.14 1.62 5.81 -4.04 -0.02 1.60 16 14 C 0.00 0.03 3.25 -71.43 -0.23 -0.20 16 15 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 16 C -0.13 -1.31 8.00 -26.20 -0.21 -1.52 16 17 C 0.01 0.07 7.69 -7.53 -0.06 0.01 16 18 N -0.43 -6.45 5.39 -237.93 -1.28 -7.74 16 19 C 0.01 0.12 5.04 -4.98 -0.03 0.10 16 20 C 0.44 9.99 7.83 -10.98 -0.09 9.91 16 21 O -0.57 -15.22 16.01 5.55 0.09 -15.13 16 22 N -0.57 -13.69 5.29 -10.96 -0.06 -13.75 16 23 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 24 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -23.80 13.05 55.50 0.72 -23.08 16 27 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 30 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.40 4.86 6.20 -40.82 -0.25 4.61 16 41 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.96 7.94 -51.93 -0.41 0.55 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.07 0.82 7.44 -51.93 -0.39 0.43 16 47 H 0.06 0.87 7.35 -51.93 -0.38 0.49 16 48 H 0.08 1.09 6.25 -51.93 -0.32 0.77 16 49 H 0.39 8.97 7.90 -40.82 -0.32 8.65 16 50 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -32.72 404.88 -9.28 -42.00 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -8.27 Total: 13.79 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.94 Total: 4.79 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.94 Total: -53.72 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.21 Total: -28.61 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.72 -9.28 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733222140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.464 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds