Wall clock time and date at job start Tue Mar 31 2020 23:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09003 * 110.55180 * 303.57216 * 3 2 1 5 5 C 1.55001 * 110.61673 * 180.52696 * 3 2 1 6 6 C 1.54812 * 102.09150 * 204.47638 * 5 3 2 7 7 C 1.54095 * 104.18874 * 20.87585 * 6 5 3 8 8 H 1.09004 * 110.00313 * 242.53947 * 7 6 5 9 9 C 1.50696 * 109.88082 * 121.45939 * 7 6 5 10 10 O 1.21288 * 120.00142 * 245.71866 * 9 7 6 11 11 N 1.34775 * 120.00095 * 65.70893 * 9 7 6 12 12 C 1.46496 * 119.99950 * 0.02562 * 11 9 7 13 13 C 1.46497 * 119.99894 * 180.02562 * 11 9 7 14 14 C 1.53941 * 113.73442 * 216.73158 * 13 11 9 15 15 N 1.47962 * 86.17963 * 221.92158 * 14 13 11 16 16 C 1.46899 * 110.99639 * 137.58207 * 15 14 13 17 17 C 1.50695 * 109.47266 * 70.63999 * 16 15 14 18 18 O 1.21293 * 120.00239 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00073 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00207 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99387 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99902 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00118 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99508 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47099 * 89.99878 * 24 22 20 26 26 H 1.48504 * 109.46816 * 209.99658 * 24 22 20 27 27 H 1.48493 * 109.47686 * 329.99972 * 24 22 20 28 28 C 1.47957 * 90.76360 * 24.69085 * 15 14 13 29 29 O 1.43743 * 107.29619 * 2.03259 * 7 6 5 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 35 35 H 1.09007 * 110.90114 * 322.66872 * 5 3 2 36 36 H 1.08997 * 110.90775 * 86.27331 * 5 3 2 37 37 H 1.09005 * 110.48017 * 262.20118 * 6 5 3 38 38 H 1.08994 * 110.60098 * 139.61408 * 6 5 3 39 39 H 1.09004 * 109.46921 * 89.99895 * 12 11 9 40 40 H 1.08995 * 109.47050 * 209.99232 * 12 11 9 41 41 H 1.08993 * 109.47261 * 329.99882 * 12 11 9 42 42 H 1.08998 * 112.94233 * 348.43881 * 13 11 9 43 43 H 1.09000 * 113.75510 * 336.23859 * 14 13 11 44 44 H 1.08995 * 113.75881 * 107.60682 * 14 13 11 45 45 H 1.09001 * 109.46940 * 190.63847 * 16 15 14 46 46 H 1.09000 * 109.47243 * 310.63474 * 16 15 14 47 47 H 0.97002 * 119.99840 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99644 * 180.02562 * 23 22 20 49 49 H 1.09007 * 113.75810 * 220.99075 * 28 15 14 50 50 H 1.08996 * 113.86319 * 89.64007 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6354 1.9914 -0.8504 5 6 3.5896 1.4735 -0.0133 6 6 3.8917 2.8556 0.6155 7 6 2.6052 3.2091 1.3864 8 1 2.1573 4.1116 0.9704 9 6 2.9230 3.4202 2.8443 10 8 2.4799 2.6589 3.6780 11 7 3.6999 4.4549 3.2217 12 6 4.2348 5.3746 2.2147 13 6 4.0093 4.6598 4.6389 14 6 4.0695 6.1415 5.0521 15 7 5.2630 5.7698 5.8437 16 6 6.3217 6.7786 5.7048 17 6 5.9137 8.0375 6.4256 18 8 4.8462 8.0892 6.9991 19 7 6.7355 9.1058 6.4340 20 6 6.3645 10.2510 7.0902 21 1 5.4140 10.2969 7.6008 22 6 7.2116 11.3524 7.0983 23 7 8.3684 11.2963 6.4775 24 14 6.7057 12.9129 7.9918 25 1 7.1767 12.8525 9.3989 26 1 7.3122 14.0885 7.3169 27 1 5.2263 13.0384 7.9701 28 6 5.5145 4.6119 4.9576 29 8 1.7005 2.1019 1.2388 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9999 0.6699 0.5982 36 1 3.9710 1.4183 -1.0329 37 1 4.0857 3.5943 -0.1623 38 1 4.7393 2.7895 1.2975 39 1 3.5326 6.1942 2.0618 40 1 5.1895 5.7734 2.5576 41 1 4.3802 4.8407 1.2757 42 1 3.4010 4.0426 5.3001 43 1 4.2841 6.8193 4.2259 44 1 3.2229 6.4629 5.6587 45 1 7.2467 6.3963 6.1365 46 1 6.4776 6.9988 4.6487 47 1 7.5898 9.0641 5.9763 48 1 8.9598 12.0651 6.4835 49 1 5.8225 3.7112 5.4888 50 1 6.1518 4.8405 4.1034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733308534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:07 Heat of formation + Delta-G solvation = -72.026780 kcal Electronic energy + Delta-G solvation = -29875.113094 eV Core-core repulsion = 25710.913088 eV Total energy + Delta-G solvation = -4164.200007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08629 -40.04226 -38.55382 -37.61389 -35.23923 -34.00633 -33.88613 -32.53247 -31.31970 -30.27472 -28.85021 -27.29010 -26.05121 -25.65284 -24.66358 -23.35093 -22.25600 -21.38030 -20.43194 -19.30187 -19.02606 -17.94063 -17.60188 -17.03806 -16.79412 -16.20881 -15.96221 -15.62550 -15.33486 -14.75785 -14.55144 -14.29105 -14.14042 -14.05532 -13.86609 -13.70071 -13.58856 -13.35705 -13.08437 -12.90246 -12.58845 -12.55994 -12.18121 -12.09241 -12.04608 -11.87029 -11.77518 -11.53391 -11.41230 -11.20518 -11.11324 -11.03352 -10.97220 -10.61595 -10.41360 -10.37289 -10.23937 -9.64363 -9.52953 -8.80751 -8.72492 -8.27921 -7.99164 -6.44469 -3.85237 2.36380 2.52153 3.16091 3.24939 3.30739 3.47759 3.85923 3.95492 4.00781 4.11674 4.21084 4.33903 4.36505 4.52036 4.66365 4.71718 4.73998 4.80071 4.90350 4.90833 4.96031 5.10428 5.13248 5.18574 5.20047 5.27927 5.29243 5.38998 5.41474 5.44138 5.49433 5.58522 5.61136 5.63583 5.72031 5.76557 5.79559 5.94706 5.98969 6.14791 6.22435 6.28450 6.50067 6.56579 7.09095 7.18762 7.52771 7.98516 8.02934 8.58396 9.15346 9.50905 10.02636 10.73236 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.001864 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.295310 B =15016.005250 C =15157.096945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.073 3.927 4 H 0.073 0.927 5 C -0.150 4.150 6 C -0.148 4.148 7 C 0.063 3.937 8 H 0.094 0.906 9 C 0.515 3.485 10 O -0.517 6.517 11 N -0.604 5.604 12 C 0.062 3.938 13 C 0.115 3.885 14 C 0.013 3.987 15 N -0.448 5.448 16 C 0.014 3.986 17 C 0.443 3.557 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.013 4.013 29 O -0.341 6.341 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.094 0.906 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 -18.678 -19.492 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.091 0.909 5 C -0.187 4.187 6 C -0.186 4.186 7 C 0.001 3.999 8 H 0.112 0.888 9 C 0.301 3.699 10 O -0.391 6.391 11 N -0.339 5.339 12 C -0.081 4.081 13 C 0.011 3.989 14 C -0.116 4.116 15 N -0.171 5.171 16 C -0.118 4.118 17 C 0.228 3.772 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.143 4.143 29 O -0.259 6.259 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.146 0.854 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.161 -19.046 -17.809 27.040 hybrid contribution 0.966 1.355 -0.894 1.889 sum -6.195 -17.690 -18.703 26.479 Atomic orbital electron populations 1.21724 0.95080 1.01679 1.02408 1.21555 0.96997 0.94033 1.02836 1.23294 0.93483 0.94347 0.87359 0.90904 1.23203 0.96239 0.97271 1.02012 1.22987 0.97370 0.98160 1.00058 1.22603 0.91482 0.92560 0.93255 0.88824 1.20488 0.78232 0.80647 0.90500 1.90724 1.50870 1.44289 1.53220 1.47847 1.50452 1.28061 1.07556 1.22040 1.00186 0.94020 0.91806 1.23259 0.96264 0.98323 0.81057 1.24261 0.96668 0.94217 0.96453 1.68374 1.03627 1.04287 1.40771 1.22443 0.96481 0.93654 0.99249 1.19667 0.86639 0.84569 0.86354 1.90534 1.24009 1.83138 1.48422 1.41865 1.18702 1.11603 1.47916 1.19703 1.04642 0.89300 1.29188 0.87918 1.25257 0.95317 0.99637 0.97712 1.69611 1.09576 1.32030 1.43132 0.85856 0.78919 0.80378 0.79134 1.20363 1.20935 1.19431 1.24507 0.96384 0.97261 0.96186 1.89029 1.53649 1.42855 1.40392 0.92905 0.92691 0.91764 0.90611 0.90871 0.90039 0.89712 0.89311 0.89714 0.91868 0.90584 0.90354 0.85362 0.91038 0.88095 0.88984 0.92962 0.77526 0.91879 0.88809 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.83 37.16 0.37 -0.71 16 2 C -0.12 -0.80 5.71 -26.73 -0.15 -0.95 16 3 C 0.07 0.54 3.33 -25.67 -0.09 0.46 16 4 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 5 C -0.15 -0.90 6.59 -24.72 -0.16 -1.06 16 6 C -0.15 -0.93 4.71 -25.20 -0.12 -1.05 16 7 C 0.06 0.59 3.04 -27.31 -0.08 0.51 16 8 H 0.09 0.72 7.99 -51.93 -0.42 0.30 16 9 C 0.51 6.54 6.86 -10.99 -0.08 6.47 16 10 O -0.52 -8.87 16.01 -14.01 -0.22 -9.09 16 11 N -0.60 -6.73 3.09 -175.28 -0.54 -7.27 16 12 C 0.06 0.48 8.62 59.84 0.52 1.00 16 13 C 0.11 1.53 4.39 -69.62 -0.31 1.22 16 14 C 0.01 0.21 6.17 -2.76 -0.02 0.19 16 15 N -0.45 -7.44 5.95 -239.88 -1.43 -8.87 16 16 C 0.01 0.24 5.31 -4.98 -0.03 0.22 16 17 C 0.44 10.35 7.59 -10.99 -0.08 10.27 16 18 O -0.58 -15.61 15.13 5.55 0.08 -15.53 16 19 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 24 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C -0.01 -0.17 7.49 -2.77 -0.02 -0.19 16 29 O -0.34 -3.87 10.11 -54.80 -0.55 -4.42 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.55 8.06 -51.92 -0.42 0.13 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.34 7.54 -51.93 -0.39 -0.05 16 38 H 0.08 0.58 7.43 -51.93 -0.39 0.19 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.59 6.36 -51.93 -0.33 0.26 16 41 H 0.08 0.41 4.43 -51.93 -0.23 0.18 16 42 H 0.13 1.95 7.24 -51.93 -0.38 1.57 16 43 H 0.07 1.04 6.35 -51.93 -0.33 0.71 16 44 H 0.10 1.78 8.09 -51.93 -0.42 1.36 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.05 0.78 7.69 -51.93 -0.40 0.38 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.07 0.76 6.63 -51.93 -0.34 0.41 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -34.77 396.71 -9.62 -44.39 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.09 Total: 8.16 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -0.49 Total: 8.45 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -1.30 Total: -53.86 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.69 Total: -29.04 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.77 -9.62 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733308534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.634 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds