Wall clock time and date at job start Tue Mar 31 2020 23:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09003 * 110.55180 * 303.57216 * 3 2 1 5 5 C 1.55001 * 110.61673 * 180.52696 * 3 2 1 6 6 C 1.54812 * 102.09150 * 204.47638 * 5 3 2 7 7 C 1.54095 * 104.18874 * 20.87585 * 6 5 3 8 8 H 1.09004 * 110.00313 * 242.53947 * 7 6 5 9 9 C 1.50696 * 109.88082 * 121.45939 * 7 6 5 10 10 O 1.21288 * 120.00142 * 245.71866 * 9 7 6 11 11 N 1.34775 * 120.00095 * 65.70893 * 9 7 6 12 12 C 1.46496 * 119.99950 * 0.02562 * 11 9 7 13 13 C 1.46497 * 119.99894 * 180.02562 * 11 9 7 14 14 C 1.53941 * 113.73442 * 216.73158 * 13 11 9 15 15 N 1.47962 * 86.17963 * 221.92158 * 14 13 11 16 16 C 1.46899 * 110.99639 * 137.58207 * 15 14 13 17 17 C 1.50695 * 109.47266 * 70.63999 * 16 15 14 18 18 O 1.21293 * 120.00239 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00073 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00207 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99387 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99902 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00118 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99508 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47099 * 89.99878 * 24 22 20 26 26 H 1.48504 * 109.46816 * 209.99658 * 24 22 20 27 27 H 1.48493 * 109.47686 * 329.99972 * 24 22 20 28 28 C 1.47957 * 90.76360 * 24.69085 * 15 14 13 29 29 O 1.43743 * 107.29619 * 2.03259 * 7 6 5 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 35 35 H 1.09007 * 110.90114 * 322.66872 * 5 3 2 36 36 H 1.08997 * 110.90775 * 86.27331 * 5 3 2 37 37 H 1.09005 * 110.48017 * 262.20118 * 6 5 3 38 38 H 1.08994 * 110.60098 * 139.61408 * 6 5 3 39 39 H 1.09004 * 109.46921 * 89.99895 * 12 11 9 40 40 H 1.08995 * 109.47050 * 209.99232 * 12 11 9 41 41 H 1.08993 * 109.47261 * 329.99882 * 12 11 9 42 42 H 1.08998 * 112.94233 * 348.43881 * 13 11 9 43 43 H 1.09000 * 113.75510 * 336.23859 * 14 13 11 44 44 H 1.08995 * 113.75881 * 107.60682 * 14 13 11 45 45 H 1.09001 * 109.46940 * 190.63847 * 16 15 14 46 46 H 1.09000 * 109.47243 * 310.63474 * 16 15 14 47 47 H 0.97002 * 119.99840 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99644 * 180.02562 * 23 22 20 49 49 H 1.09007 * 113.75810 * 220.99075 * 28 15 14 50 50 H 1.08996 * 113.86319 * 89.64007 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6354 1.9914 -0.8504 5 6 3.5896 1.4735 -0.0133 6 6 3.8917 2.8556 0.6155 7 6 2.6052 3.2091 1.3864 8 1 2.1573 4.1116 0.9704 9 6 2.9230 3.4202 2.8443 10 8 2.4799 2.6589 3.6780 11 7 3.6999 4.4549 3.2217 12 6 4.2348 5.3746 2.2147 13 6 4.0093 4.6598 4.6389 14 6 4.0695 6.1415 5.0521 15 7 5.2630 5.7698 5.8437 16 6 6.3217 6.7786 5.7048 17 6 5.9137 8.0375 6.4256 18 8 4.8462 8.0892 6.9991 19 7 6.7355 9.1058 6.4340 20 6 6.3645 10.2510 7.0902 21 1 5.4140 10.2969 7.6008 22 6 7.2116 11.3524 7.0983 23 7 8.3684 11.2963 6.4775 24 14 6.7057 12.9129 7.9918 25 1 7.1767 12.8525 9.3989 26 1 7.3122 14.0885 7.3169 27 1 5.2263 13.0384 7.9701 28 6 5.5145 4.6119 4.9576 29 8 1.7005 2.1019 1.2388 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9999 0.6699 0.5982 36 1 3.9710 1.4183 -1.0329 37 1 4.0857 3.5943 -0.1623 38 1 4.7393 2.7895 1.2975 39 1 3.5326 6.1942 2.0618 40 1 5.1895 5.7734 2.5576 41 1 4.3802 4.8407 1.2757 42 1 3.4010 4.0426 5.3001 43 1 4.2841 6.8193 4.2259 44 1 3.2229 6.4629 5.6587 45 1 7.2467 6.3963 6.1365 46 1 6.4776 6.9988 4.6487 47 1 7.5898 9.0641 5.9763 48 1 8.9598 12.0651 6.4835 49 1 5.8225 3.7112 5.4888 50 1 6.1518 4.8405 4.1034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733308534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:06 Heat of formation + Delta-G solvation = -98.444496 kcal Electronic energy + Delta-G solvation = -29876.258652 eV Core-core repulsion = 25710.913088 eV Total energy + Delta-G solvation = -4165.345565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.04999 -41.03596 -39.82564 -39.07607 -36.28506 -35.87739 -34.56136 -33.33691 -33.12584 -31.49634 -29.63682 -28.10295 -27.36216 -27.04292 -25.75424 -24.52308 -22.81554 -21.93077 -21.53340 -20.91781 -20.11872 -19.86430 -18.44636 -17.96449 -17.84674 -17.48670 -16.90228 -16.75694 -16.49837 -16.37382 -15.76592 -15.65787 -15.40373 -14.85079 -14.79218 -14.73228 -14.45612 -14.26614 -14.02604 -13.88569 -13.65751 -13.56741 -13.51864 -13.26772 -13.19754 -12.88804 -12.81487 -12.55139 -12.43227 -12.42705 -12.17396 -12.13547 -11.93197 -11.82662 -11.74760 -11.51193 -11.50060 -11.09006 -10.50064 -10.35333 -10.02139 -9.77615 -9.75404 -8.47456 -5.95787 1.37062 1.41429 1.43287 1.53482 1.65373 2.03997 2.28371 2.75265 2.92670 3.19048 3.23459 3.32526 3.45011 3.54862 3.70274 3.83677 3.85623 4.06960 4.12205 4.17278 4.22072 4.23689 4.30827 4.37198 4.39401 4.39726 4.51300 4.56261 4.58103 4.69097 4.75504 4.77220 4.85492 4.87950 4.95081 4.96285 5.01514 5.07877 5.14319 5.23043 5.30169 5.36906 5.41047 5.41908 5.84296 5.88404 6.04261 6.28965 6.59754 7.05123 7.12450 7.55255 8.11582 8.69752 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.001864 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.295310 B =15016.005250 C =15157.096945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.065 3.935 4 H 0.092 0.908 5 C -0.145 4.145 6 C -0.143 4.143 7 C 0.062 3.938 8 H 0.115 0.885 9 C 0.507 3.493 10 O -0.575 6.575 11 N -0.598 5.598 12 C 0.054 3.946 13 C 0.123 3.877 14 C 0.015 3.985 15 N -0.480 5.480 16 C 0.027 3.973 17 C 0.439 3.561 18 O -0.621 6.621 19 N -0.571 5.571 20 C -0.333 4.333 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.275 1.275 28 C 0.004 3.996 29 O -0.380 6.380 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.100 0.900 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 -18.527 -22.595 29.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.008 3.992 4 H 0.109 0.891 5 C -0.183 4.183 6 C -0.180 4.180 7 C 0.001 3.999 8 H 0.133 0.867 9 C 0.296 3.704 10 O -0.454 6.454 11 N -0.331 5.331 12 C -0.088 4.088 13 C 0.018 3.982 14 C -0.115 4.115 15 N -0.203 5.203 16 C -0.104 4.104 17 C 0.226 3.774 18 O -0.507 6.507 19 N -0.209 5.209 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.200 1.200 28 C -0.125 4.125 29 O -0.299 6.299 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.129 0.871 46 H 0.104 0.896 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.118 0.882 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.388 -18.888 -20.956 28.721 hybrid contribution 0.372 1.263 0.073 1.319 sum -5.016 -17.624 -20.883 27.783 Atomic orbital electron populations 1.21712 0.95575 1.01921 1.01591 1.21602 0.96596 0.94187 1.03107 1.23560 0.94802 0.94322 0.86506 0.89059 1.23210 0.94924 0.96694 1.03451 1.23060 0.95269 0.99272 1.00427 1.22772 0.93172 0.93076 0.90855 0.86740 1.21290 0.77289 0.79967 0.91840 1.90693 1.53168 1.46481 1.55030 1.47874 1.49938 1.28180 1.07118 1.22358 1.00405 0.93930 0.92064 1.22854 0.96777 0.96170 0.82377 1.24171 0.95396 0.95752 0.96151 1.68337 1.03815 1.05310 1.42858 1.22344 0.97095 0.90691 1.00298 1.20755 0.85528 0.85773 0.85324 1.90511 1.25876 1.84176 1.50103 1.41909 1.19210 1.11613 1.48175 1.19626 1.04440 0.91261 1.30975 0.90593 1.25982 0.95142 1.01922 0.97990 1.69660 1.09930 1.33025 1.43247 0.84966 0.78244 0.77132 0.78221 1.19846 1.19330 1.19957 1.24506 0.95888 0.95742 0.96358 1.89011 1.54674 1.43814 1.42417 0.91653 0.91973 0.94548 0.87979 0.92850 0.91402 0.86709 0.85664 0.90063 0.91309 0.89838 0.87212 0.88144 0.89720 0.91622 0.87096 0.89554 0.76881 0.91268 0.88184 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.83 71.98 0.71 -1.38 16 2 C -0.12 -1.49 5.71 30.59 0.17 -1.31 16 3 C 0.06 0.85 3.33 31.28 0.10 0.95 16 4 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 5 C -0.15 -1.32 6.59 31.90 0.21 -1.11 16 6 C -0.14 -1.29 4.71 31.58 0.15 -1.14 16 7 C 0.06 1.07 3.04 30.22 0.09 1.16 16 8 H 0.12 1.45 7.99 -2.39 -0.02 1.43 16 9 C 0.51 12.82 6.86 87.66 0.60 13.42 16 10 O -0.58 -20.80 16.01 15.65 0.25 -20.55 16 11 N -0.60 -12.62 3.09 -826.84 -2.56 -15.18 16 12 C 0.05 0.66 8.62 127.77 1.10 1.76 16 13 C 0.12 3.28 4.39 46.56 0.20 3.48 16 14 C 0.01 0.47 6.17 86.41 0.53 1.00 16 15 N -0.48 -15.61 5.95 -912.86 -5.43 -21.04 16 16 C 0.03 0.90 5.31 85.56 0.45 1.36 16 17 C 0.44 20.65 7.59 87.65 0.67 21.31 16 18 O -0.62 -34.66 15.13 -3.07 -0.05 -34.71 16 19 N -0.57 -28.80 5.29 -306.98 -1.62 -30.42 16 20 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 21 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 23 N -0.92 -48.56 13.05 21.66 0.28 -48.28 16 24 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 C 0.00 0.10 7.49 86.41 0.65 0.75 16 29 O -0.38 -8.52 10.11 -130.27 -1.32 -9.84 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.04 0.69 7.92 -2.39 -0.02 0.67 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.80 8.06 -2.38 -0.02 0.78 16 36 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.13 0.25 7.54 -2.38 -0.02 0.23 16 38 H 0.08 0.83 7.43 -2.39 -0.02 0.81 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.94 6.36 -2.39 -0.02 0.93 16 41 H 0.11 0.66 4.43 -2.39 -0.01 0.65 16 42 H 0.10 3.27 7.24 -2.39 -0.02 3.25 16 43 H 0.08 2.37 6.35 -2.39 -0.02 2.35 16 44 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 45 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 46 H 0.09 2.28 7.69 -2.39 -0.02 2.26 16 47 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 48 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 49 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 50 H 0.10 1.76 6.63 -2.39 -0.02 1.74 16 Total: -1.00 -80.48 396.71 -1.27 -81.75 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.22 Total: 31.39 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 6.93 Total: 22.18 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -9.32 Total: -114.92 kcal Atomic # 8 Polarization: -63.98 SS G_CDS: -1.11 Total: -65.09 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -80.48 -1.27 -81.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733308534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.699 kcal (2) G-P(sol) polarization free energy of solvation -80.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds