Wall clock time and date at job start Tue Mar 31 2020 23:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46974 * 2 1 4 4 H 1.09003 * 110.35217 * 304.31106 * 3 2 1 5 5 C 1.54947 * 110.31054 * 182.16810 * 3 2 1 6 6 C 1.55458 * 100.99063 * 204.69355 * 5 3 2 7 7 C 1.54383 * 102.18590 * 34.03344 * 6 5 3 8 8 H 1.09003 * 109.82559 * 98.30211 * 7 6 5 9 9 C 1.50694 * 109.83236 * 219.18387 * 7 6 5 10 10 O 1.21282 * 120.00130 * 106.87295 * 9 7 6 11 11 N 1.34777 * 120.00281 * 286.86910 * 9 7 6 12 12 C 1.46501 * 120.00241 * 184.64742 * 11 9 7 13 13 C 1.46497 * 119.99672 * 4.65449 * 11 9 7 14 14 C 1.53513 * 114.17043 * 239.99686 * 13 11 9 15 15 N 1.47486 * 87.93132 * 220.33114 * 14 13 11 16 16 C 1.46896 * 110.99783 * 138.70311 * 15 14 13 17 17 C 1.50706 * 109.47166 * 169.99748 * 16 15 14 18 18 O 1.21299 * 119.99579 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00083 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99568 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00030 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99667 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00326 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00030 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47288 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.46849 * 300.00023 * 24 22 20 27 27 H 1.48498 * 109.47451 * 59.99798 * 24 22 20 28 28 C 1.47479 * 87.83630 * 27.00868 * 15 14 13 29 29 O 1.43235 * 107.66502 * 338.74494 * 7 6 5 30 30 H 1.09002 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47281 * 299.99798 * 1 2 3 32 32 H 1.09002 * 109.47029 * 60.00287 * 1 2 3 33 33 H 1.08997 * 109.47281 * 240.00202 * 2 1 3 34 34 H 1.09000 * 109.47549 * 119.99701 * 2 1 3 35 35 H 1.08999 * 111.12560 * 322.55566 * 5 3 2 36 36 H 1.08995 * 111.13082 * 86.67750 * 5 3 2 37 37 H 1.09005 * 110.82961 * 275.89290 * 6 5 3 38 38 H 1.08993 * 110.92758 * 152.22353 * 6 5 3 39 39 H 1.09000 * 109.47301 * 269.18489 * 12 11 9 40 40 H 1.09001 * 109.46744 * 29.18406 * 12 11 9 41 41 H 1.08996 * 109.46904 * 149.18076 * 12 11 9 42 42 H 1.09000 * 113.25976 * 12.95123 * 13 11 9 43 43 H 1.08993 * 113.47730 * 105.55947 * 14 13 11 44 44 H 1.09003 * 113.47480 * 335.09212 * 14 13 11 45 45 H 1.08996 * 109.47348 * 50.00018 * 16 15 14 46 46 H 1.08998 * 109.47441 * 289.99532 * 16 15 14 47 47 H 0.96993 * 119.99738 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99562 * 0.02562 * 23 22 20 49 49 H 1.08999 * 113.47647 * 87.75827 * 28 15 14 50 50 H 1.08997 * 113.47317 * 218.22342 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6231 1.9920 -0.8441 5 6 3.5882 1.4656 -0.0550 6 6 3.8871 2.8482 0.5898 7 6 2.7559 2.9727 1.6330 8 1 3.1268 2.6843 2.6166 9 6 2.2513 4.3920 1.6731 10 8 1.1697 4.6648 1.1968 11 7 3.0016 5.3584 2.2384 12 6 2.4693 6.7170 2.3690 13 6 4.3497 5.0502 2.7220 14 6 4.5512 5.2998 4.2233 15 7 5.8825 5.8457 3.8994 16 6 6.1664 7.0475 4.6949 17 6 7.6131 7.4334 4.5233 18 8 8.3365 6.7719 3.8088 19 7 8.1030 8.5134 5.1635 20 6 9.4193 8.8640 5.0077 21 1 10.0634 8.2750 4.3716 22 6 9.9242 9.9778 5.6674 23 7 9.1402 10.6953 6.4402 24 14 11.7174 10.4560 5.4546 25 1 12.0043 11.6713 6.2583 26 1 12.5848 9.3422 5.9155 27 1 11.9888 10.7343 4.0214 28 6 5.3506 6.2044 2.5714 29 8 1.6987 2.0920 1.2350 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0145 0.6566 0.5382 36 1 3.9455 1.4253 -1.0839 37 1 3.8201 3.6444 -0.1518 38 1 4.8634 2.8490 1.0743 39 1 2.7354 7.2980 1.4859 40 1 1.3841 6.6745 2.4625 41 1 2.8922 7.1892 3.2556 42 1 4.7210 4.0855 2.3762 43 1 4.5890 4.3849 4.8143 44 1 3.8667 6.0410 4.6359 45 1 5.9675 6.8424 5.7467 46 1 5.5298 7.8654 4.3575 47 1 7.5244 9.0425 5.7345 48 1 8.2089 10.4472 6.5504 49 1 4.8795 7.1869 2.5432 50 1 6.0661 6.0559 1.7626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733308535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:09 Heat of formation + Delta-G solvation = -96.518713 kcal Electronic energy + Delta-G solvation = -30012.186412 eV Core-core repulsion = 25846.924356 eV Total energy + Delta-G solvation = -4165.262057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.20921 -41.08431 -39.93850 -39.35031 -36.40792 -35.92472 -34.61580 -33.24615 -33.17256 -31.32372 -30.42455 -27.88797 -27.22289 -26.88937 -25.46868 -24.71376 -22.92889 -22.15113 -21.69507 -21.12870 -20.11815 -19.93735 -18.93352 -18.19520 -17.80046 -17.34757 -17.11080 -16.75992 -16.64901 -16.08761 -15.95787 -15.81507 -15.46989 -15.01067 -14.96631 -14.50468 -14.42629 -14.27972 -14.11267 -13.90172 -13.83261 -13.72234 -13.33648 -13.16246 -13.05754 -12.94897 -12.83754 -12.72500 -12.45540 -12.22329 -11.99178 -11.94674 -11.91851 -11.87163 -11.78186 -11.51799 -11.50016 -11.27189 -10.45166 -10.37954 -10.09413 -9.87476 -9.81397 -8.91344 -6.05356 1.35258 1.53314 1.55037 1.65514 1.82863 2.02429 2.40272 2.68030 2.83234 3.15584 3.18598 3.26515 3.35631 3.41976 3.58831 3.71624 3.93831 3.94932 4.04461 4.09432 4.12583 4.19414 4.24665 4.31038 4.31371 4.39742 4.43746 4.47815 4.50617 4.61077 4.72985 4.75198 4.78606 4.82643 4.86706 4.91101 4.97194 5.07654 5.11115 5.22352 5.23656 5.31099 5.41841 5.60228 5.85070 5.91001 5.97957 6.19200 6.59066 6.76779 6.98518 7.46048 7.95651 8.56469 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.001956 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.231865 B =14309.889866 C =14890.285672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.068 3.932 4 H 0.057 0.943 5 C -0.141 4.141 6 C -0.146 4.146 7 C 0.064 3.936 8 H 0.126 0.874 9 C 0.502 3.498 10 O -0.569 6.569 11 N -0.596 5.596 12 C 0.078 3.922 13 C 0.119 3.881 14 C -0.013 4.013 15 N -0.463 5.463 16 C 0.024 3.976 17 C 0.446 3.554 18 O -0.611 6.611 19 N -0.590 5.590 20 C -0.409 4.409 21 H 0.072 0.928 22 C -0.043 4.043 23 N -0.918 5.918 24 Si 1.132 2.868 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.009 4.009 29 O -0.373 6.373 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.146 0.854 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.085 0.915 47 H 0.384 0.616 48 H 0.259 0.741 49 H 0.083 0.917 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.533 -17.548 -9.736 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C 0.011 3.989 4 H 0.075 0.925 5 C -0.178 4.178 6 C -0.184 4.184 7 C 0.003 3.997 8 H 0.143 0.857 9 C 0.290 3.710 10 O -0.448 6.448 11 N -0.329 5.329 12 C -0.064 4.064 13 C 0.015 3.985 14 C -0.143 4.143 15 N -0.185 5.185 16 C -0.108 4.108 17 C 0.234 3.766 18 O -0.496 6.496 19 N -0.230 5.230 20 C -0.538 4.538 21 H 0.091 0.909 22 C -0.241 4.241 23 N -0.557 5.557 24 Si 0.952 3.048 25 H -0.198 1.198 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.138 4.138 29 O -0.291 6.291 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.163 0.837 43 H 0.128 0.872 44 H 0.106 0.894 45 H 0.130 0.870 46 H 0.102 0.898 47 H 0.218 0.782 48 H 0.070 0.930 49 H 0.101 0.899 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.059 -17.155 -9.819 24.256 hybrid contribution -2.080 0.361 -0.130 2.115 sum -16.140 -16.793 -9.949 25.327 Atomic orbital electron populations 1.21716 0.95964 1.01918 1.01278 1.21670 0.96308 0.93509 1.03853 1.23301 0.95320 0.94230 0.86074 0.92452 1.23366 0.94038 0.96731 1.03675 1.23241 0.98439 0.99196 0.97486 1.22806 0.88532 0.86258 1.02149 0.85697 1.21586 0.84229 0.88502 0.76638 1.90677 1.23590 1.83668 1.46846 1.47839 1.15426 1.10256 1.59395 1.21727 1.00099 0.82011 1.02548 1.23004 0.80330 1.00534 0.94677 1.24490 0.89828 1.02629 0.97340 1.68732 1.24973 1.21789 1.03051 1.22380 0.92693 0.94281 1.01429 1.20763 0.90953 0.81782 0.83122 1.90500 1.61687 1.54547 1.42852 1.42011 1.10803 1.26260 1.43878 1.20499 0.87730 1.14192 1.31377 0.90944 1.27775 1.10873 0.92316 0.93116 1.70978 1.07255 1.40163 1.37326 0.82642 0.68279 0.76681 0.77173 1.19830 1.19854 1.19861 1.24382 0.96329 0.98675 0.94453 1.88497 1.42161 1.57573 1.40890 0.91395 0.94090 0.93173 0.88520 0.90713 0.88159 0.87859 0.90840 0.86620 0.92214 0.91242 0.89422 0.83668 0.87214 0.89397 0.87046 0.89758 0.78208 0.93000 0.89942 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.83 71.98 0.71 -1.49 16 2 C -0.12 -1.43 5.68 30.59 0.17 -1.25 16 3 C 0.07 1.09 3.43 31.26 0.11 1.19 16 4 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.14 -1.50 6.57 32.11 0.21 -1.29 16 6 C -0.15 -1.93 5.59 31.91 0.18 -1.75 16 7 C 0.06 1.15 3.05 30.32 0.09 1.25 16 8 H 0.13 1.75 7.62 -2.39 -0.02 1.73 16 9 C 0.50 11.88 6.87 87.66 0.60 12.48 16 10 O -0.57 -18.50 16.17 15.52 0.25 -18.25 16 11 N -0.60 -11.59 3.11 -821.60 -2.56 -14.15 16 12 C 0.08 1.43 9.06 127.77 1.16 2.59 16 13 C 0.12 2.09 4.08 45.45 0.19 2.27 16 14 C -0.01 -0.24 7.24 83.58 0.61 0.36 16 15 N -0.46 -12.70 5.82 -932.48 -5.43 -18.13 16 16 C 0.02 0.74 5.30 85.56 0.45 1.19 16 17 C 0.45 20.40 7.85 87.66 0.69 21.09 16 18 O -0.61 -33.24 16.01 -3.09 -0.05 -33.29 16 19 N -0.59 -29.18 5.28 -306.97 -1.62 -30.80 16 20 C -0.41 -23.02 9.68 84.04 0.81 -22.21 16 21 H 0.07 4.39 7.16 -2.91 -0.02 4.37 16 22 C -0.04 -2.29 5.50 84.93 0.47 -1.82 16 23 N -0.92 -50.54 13.68 21.66 0.30 -50.25 16 24 Si 1.13 47.95 29.92 68.60 2.05 50.01 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 C -0.01 -0.20 7.13 83.58 0.60 0.39 16 29 O -0.37 -8.28 9.92 -130.43 -1.29 -9.58 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.76 7.91 -2.39 -0.02 0.75 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.80 8.06 -2.39 -0.02 0.78 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 1.13 7.84 -2.38 -0.02 1.11 16 38 H 0.12 1.11 6.74 -2.39 -0.02 1.10 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.42 7.47 -2.39 -0.02 1.40 16 41 H 0.09 1.28 6.22 -2.39 -0.01 1.26 16 42 H 0.15 2.11 4.50 -2.39 -0.01 2.10 16 43 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.09 1.39 6.72 -2.39 -0.02 1.37 16 45 H 0.11 2.96 8.08 -2.39 -0.02 2.94 16 46 H 0.08 2.18 7.30 -2.39 -0.02 2.16 16 47 H 0.38 17.32 6.73 -92.71 -0.62 16.70 16 48 H 0.26 13.73 6.78 -92.71 -0.63 13.10 16 49 H 0.08 1.80 5.87 -2.39 -0.01 1.79 16 50 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -79.33 396.37 -0.84 -80.17 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.47 Total: 31.27 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 7.04 Total: 13.00 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -9.31 Total: -113.33 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -1.09 Total: -61.12 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.05 Total: 50.01 kcal Total: -79.33 -0.84 -80.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733308535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.346 kcal (2) G-P(sol) polarization free energy of solvation -79.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds