Wall clock time and date at job start Tue Mar 31 2020 23:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.87086 * 53.99464 * 3 2 1 5 5 C 1.54094 * 109.88146 * 175.00362 * 3 2 1 6 6 C 1.54808 * 104.19256 * 121.45338 * 5 3 2 7 7 C 1.54998 * 102.09117 * 20.88148 * 6 5 3 8 8 H 1.09005 * 110.62027 * 81.47743 * 7 6 5 9 9 C 1.50700 * 110.62017 * 204.47576 * 7 6 5 10 10 O 1.21285 * 119.99834 * 114.99798 * 9 7 6 11 11 N 1.34770 * 120.00026 * 295.00090 * 9 7 6 12 12 C 1.46504 * 119.99868 * 359.97438 * 11 9 7 13 13 C 1.46498 * 120.00271 * 179.97438 * 11 9 7 14 14 C 1.53930 * 113.73685 * 218.76660 * 13 11 9 15 15 N 1.48194 * 86.10041 * 221.95434 * 14 13 11 16 16 C 1.46904 * 111.06958 * 137.51886 * 15 14 13 17 17 C 1.50697 * 109.47038 * 90.56462 * 16 15 14 18 18 O 1.21292 * 120.00015 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99940 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99831 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99876 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99667 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99909 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47047 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46670 * 120.00574 * 24 22 20 27 27 H 1.48494 * 109.47200 * 240.00296 * 24 22 20 28 28 C 1.47961 * 90.79960 * 24.60324 * 15 14 13 29 29 O 1.43747 * 109.88055 * 292.83555 * 3 2 1 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09005 * 110.48825 * 240.12897 * 5 3 2 36 36 H 1.09003 * 110.48982 * 2.64125 * 5 3 2 37 37 H 1.08998 * 110.90817 * 139.07795 * 6 5 3 38 38 H 1.08998 * 110.90995 * 262.68749 * 6 5 3 39 39 H 1.09003 * 109.46903 * 90.00702 * 12 11 9 40 40 H 1.08997 * 109.47148 * 210.00063 * 12 11 9 41 41 H 1.08998 * 109.47269 * 330.00490 * 12 11 9 42 42 H 1.09000 * 112.93666 * 350.33644 * 13 11 9 43 43 H 1.08995 * 113.75948 * 336.23696 * 14 13 11 44 44 H 1.09000 * 113.75881 * 107.60115 * 14 13 11 45 45 H 1.09000 * 109.47336 * 210.56680 * 16 15 14 46 46 H 1.09002 * 109.47169 * 330.56773 * 16 15 14 47 47 H 0.96999 * 119.99971 * 0.02562 * 19 17 16 48 48 H 0.96998 * 119.99489 * 179.97438 * 23 22 20 49 49 H 1.09004 * 113.75842 * 221.08669 * 28 15 14 50 50 H 1.08997 * 113.86504 * 89.73144 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9927 0.8293 5 6 3.5757 1.4554 0.1262 6 6 4.0544 2.2042 -1.1413 7 6 2.7840 2.9910 -1.5529 8 1 2.6914 3.9047 -0.9657 9 6 2.8087 3.3057 -3.0264 10 8 1.9787 2.8186 -3.7645 11 7 3.7532 4.1283 -3.5241 12 6 4.7555 4.7171 -2.6323 13 6 3.7776 4.4338 -4.9566 14 6 5.1961 4.5132 -5.5491 15 7 4.7099 5.6997 -6.2922 16 6 5.7097 6.7759 -6.2814 17 6 6.6113 6.6360 -7.4808 18 8 6.4377 5.7293 -8.2675 19 7 7.6099 7.5191 -7.6798 20 6 8.4305 7.3915 -8.7708 21 1 8.2764 6.5837 -9.4708 22 6 9.4597 8.3021 -8.9762 23 7 9.6467 9.2853 -8.1246 24 14 10.5772 8.1287 -10.4630 25 1 10.1591 6.9486 -11.2615 26 1 10.4808 9.3517 -11.2999 27 1 11.9797 7.9485 -10.0097 28 6 3.6650 5.9365 -5.2717 29 8 1.7083 2.0782 -1.2459 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.8802 1.9926 1.0245 36 1 3.9659 0.4377 0.1408 37 1 4.8735 2.8836 -0.9057 38 1 4.3462 1.5012 -1.9215 39 1 5.6210 4.0572 -2.5727 40 1 5.0642 5.6868 -3.0227 41 1 4.3270 4.8452 -1.6383 42 1 3.0946 3.8119 -5.5353 43 1 5.9672 4.7415 -4.8134 44 1 5.4530 3.6684 -6.1881 45 1 5.2049 7.7413 -6.3169 46 1 6.3044 6.7102 -5.3702 47 1 7.7485 8.2444 -7.0509 48 1 10.3654 9.9208 -8.2679 49 1 2.7009 6.2266 -5.6894 50 1 3.9856 6.5819 -4.4539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733308538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:18 Heat of formation + Delta-G solvation = -72.704772 kcal Electronic energy + Delta-G solvation = -29705.288964 eV Core-core repulsion = 25541.059558 eV Total energy + Delta-G solvation = -4164.229407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07182 -40.04941 -38.60828 -37.64945 -35.27214 -33.98652 -33.86371 -32.51773 -31.28337 -30.28483 -28.84430 -27.35843 -26.14341 -25.68512 -24.67494 -23.32533 -22.40393 -21.32908 -20.40419 -19.38894 -19.01775 -17.93598 -17.65420 -16.92061 -16.79167 -16.28814 -16.10340 -15.58724 -15.24453 -15.00215 -14.59868 -14.26675 -14.11199 -14.01565 -13.85715 -13.75390 -13.59267 -13.32649 -13.09674 -12.95124 -12.66797 -12.55396 -12.32499 -12.21913 -12.11238 -11.87069 -11.66876 -11.51653 -11.44857 -11.19542 -11.12589 -11.00846 -10.99355 -10.69596 -10.34286 -10.23117 -10.21641 -9.78250 -9.51096 -8.88239 -8.78537 -8.20151 -7.96002 -6.41935 -3.82451 2.31862 2.42384 3.16157 3.26729 3.34260 3.45628 3.88038 3.91247 3.98648 4.11986 4.21949 4.33823 4.39516 4.44793 4.59168 4.66655 4.70989 4.78783 4.84613 4.89960 4.95265 5.05306 5.10980 5.16390 5.20143 5.25352 5.27829 5.31546 5.38044 5.40446 5.48822 5.58300 5.60797 5.62900 5.64119 5.72218 5.80966 5.86739 5.99828 6.04826 6.18333 6.27683 6.48325 6.51800 7.04349 7.13758 7.55537 7.92422 8.06479 8.62246 9.18841 9.54628 10.07135 10.76052 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.001811 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.860743 B =15461.273371 C =15722.346432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.072 3.928 4 H 0.071 0.929 5 C -0.151 4.151 6 C -0.145 4.145 7 C 0.061 3.939 8 H 0.095 0.905 9 C 0.521 3.479 10 O -0.515 6.515 11 N -0.604 5.604 12 C 0.069 3.931 13 C 0.118 3.882 14 C 0.003 3.997 15 N -0.444 5.444 16 C 0.014 3.986 17 C 0.446 3.554 18 O -0.573 6.573 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.013 4.013 29 O -0.341 6.341 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.095 0.905 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.541 -11.050 23.441 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.014 3.986 4 H 0.089 0.911 5 C -0.189 4.189 6 C -0.183 4.183 7 C 0.000 4.000 8 H 0.113 0.887 9 C 0.308 3.692 10 O -0.389 6.389 11 N -0.339 5.339 12 C -0.074 4.074 13 C 0.014 3.986 14 C -0.127 4.127 15 N -0.166 5.166 16 C -0.119 4.119 17 C 0.231 3.769 18 O -0.456 6.456 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.143 4.143 29 O -0.259 6.259 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.148 0.852 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.114 0.886 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.338 -11.880 21.675 27.625 hybrid contribution 1.384 0.940 0.742 1.830 sum -10.954 -10.940 22.416 27.243 Atomic orbital electron populations 1.21731 0.95148 1.01614 1.02395 1.21717 0.97062 0.94514 1.02629 1.22893 0.94103 0.94495 0.87070 0.91095 1.23026 0.95386 1.02224 0.98264 1.23180 0.97010 0.99757 0.98389 1.22957 0.88387 0.95071 0.93615 0.88730 1.20190 0.81040 0.78555 0.89462 1.90740 1.37693 1.50466 1.59987 1.47831 1.30304 1.47253 1.08485 1.21957 0.92091 0.99494 0.93855 1.23203 0.99020 0.96614 0.79758 1.24466 0.95143 0.96848 0.96195 1.68387 1.07848 1.03530 1.36874 1.22459 0.94878 0.96364 0.98162 1.19671 0.83656 0.85348 0.88246 1.90535 1.72712 1.34859 1.47515 1.41877 1.27323 1.26539 1.24753 1.19754 1.08201 1.12432 1.02271 0.87891 1.25248 0.98269 0.95539 0.98947 1.69619 1.32772 1.15515 1.36611 0.85806 0.79360 0.78377 0.80849 1.19220 1.20757 1.20803 1.24495 0.98894 0.96163 0.94726 1.89044 1.41121 1.56474 1.39275 0.92948 0.91730 0.92770 0.90804 0.91022 0.90210 0.89844 0.89066 0.89780 0.91811 0.90533 0.90816 0.85192 0.90923 0.88338 0.89282 0.92543 0.77598 0.91988 0.88648 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.83 37.16 0.37 -0.73 16 2 C -0.12 -0.83 5.42 -26.73 -0.14 -0.98 16 3 C 0.07 0.53 3.41 -26.16 -0.09 0.44 16 4 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 5 C -0.15 -0.80 6.64 -25.21 -0.17 -0.97 16 6 C -0.15 -0.93 5.78 -24.72 -0.14 -1.07 16 7 C 0.06 0.54 2.80 -26.83 -0.08 0.47 16 8 H 0.10 0.63 7.33 -51.93 -0.38 0.25 16 9 C 0.52 6.33 7.12 -10.99 -0.08 6.25 16 10 O -0.51 -8.63 16.04 -13.52 -0.22 -8.85 16 11 N -0.60 -6.24 3.09 -175.28 -0.54 -6.78 16 12 C 0.07 0.46 7.58 59.85 0.45 0.91 16 13 C 0.12 1.49 4.39 -69.63 -0.31 1.18 16 14 C 0.00 0.04 7.41 -2.63 -0.02 0.02 16 15 N -0.44 -7.29 5.65 -239.68 -1.35 -8.65 16 16 C 0.01 0.23 5.28 -4.98 -0.03 0.21 16 17 C 0.45 10.56 7.83 -10.98 -0.09 10.47 16 18 O -0.57 -15.88 16.01 5.55 0.09 -15.79 16 19 N -0.57 -14.32 5.29 -10.96 -0.06 -14.38 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 24 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C -0.01 -0.16 7.46 -2.76 -0.02 -0.18 16 29 O -0.34 -3.77 10.12 -54.30 -0.55 -4.32 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.40 7.70 -51.93 -0.40 0.00 16 37 H 0.09 0.38 6.53 -51.93 -0.34 0.04 16 38 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 39 H 0.06 0.37 7.70 -51.93 -0.40 -0.03 16 40 H 0.08 0.51 6.35 -51.93 -0.33 0.18 16 41 H 0.07 0.32 6.02 -51.93 -0.31 0.01 16 42 H 0.13 1.91 7.22 -51.93 -0.37 1.53 16 43 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 44 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 45 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 46 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 47 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 50 H 0.07 0.74 6.63 -51.93 -0.34 0.39 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -35.56 397.84 -9.56 -45.12 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -8.05 Total: 7.27 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.58 Total: 8.05 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -1.23 Total: -53.52 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.68 Total: -28.96 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.56 -9.56 -45.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733308538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.585 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds