Wall clock time and date at job start Tue Mar 31 2020 23:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.87086 * 53.99464 * 3 2 1 5 5 C 1.54094 * 109.88146 * 175.00362 * 3 2 1 6 6 C 1.54808 * 104.19256 * 121.45338 * 5 3 2 7 7 C 1.54998 * 102.09117 * 20.88148 * 6 5 3 8 8 H 1.09005 * 110.62027 * 81.47743 * 7 6 5 9 9 C 1.50700 * 110.62017 * 204.47576 * 7 6 5 10 10 O 1.21285 * 119.99834 * 114.99798 * 9 7 6 11 11 N 1.34770 * 120.00026 * 295.00090 * 9 7 6 12 12 C 1.46504 * 119.99868 * 359.97438 * 11 9 7 13 13 C 1.46498 * 120.00271 * 179.97438 * 11 9 7 14 14 C 1.53930 * 113.73685 * 218.76660 * 13 11 9 15 15 N 1.48194 * 86.10041 * 221.95434 * 14 13 11 16 16 C 1.46904 * 111.06958 * 137.51886 * 15 14 13 17 17 C 1.50697 * 109.47038 * 90.56462 * 16 15 14 18 18 O 1.21292 * 120.00015 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99940 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99831 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99876 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99667 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99909 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47047 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46670 * 120.00574 * 24 22 20 27 27 H 1.48494 * 109.47200 * 240.00296 * 24 22 20 28 28 C 1.47961 * 90.79960 * 24.60324 * 15 14 13 29 29 O 1.43747 * 109.88055 * 292.83555 * 3 2 1 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09005 * 110.48825 * 240.12897 * 5 3 2 36 36 H 1.09003 * 110.48982 * 2.64125 * 5 3 2 37 37 H 1.08998 * 110.90817 * 139.07795 * 6 5 3 38 38 H 1.08998 * 110.90995 * 262.68749 * 6 5 3 39 39 H 1.09003 * 109.46903 * 90.00702 * 12 11 9 40 40 H 1.08997 * 109.47148 * 210.00063 * 12 11 9 41 41 H 1.08998 * 109.47269 * 330.00490 * 12 11 9 42 42 H 1.09000 * 112.93666 * 350.33644 * 13 11 9 43 43 H 1.08995 * 113.75948 * 336.23696 * 14 13 11 44 44 H 1.09000 * 113.75881 * 107.60115 * 14 13 11 45 45 H 1.09000 * 109.47336 * 210.56680 * 16 15 14 46 46 H 1.09002 * 109.47169 * 330.56773 * 16 15 14 47 47 H 0.96999 * 119.99971 * 0.02562 * 19 17 16 48 48 H 0.96998 * 119.99489 * 179.97438 * 23 22 20 49 49 H 1.09004 * 113.75842 * 221.08669 * 28 15 14 50 50 H 1.08997 * 113.86504 * 89.73144 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9927 0.8293 5 6 3.5757 1.4554 0.1262 6 6 4.0544 2.2042 -1.1413 7 6 2.7840 2.9910 -1.5529 8 1 2.6914 3.9047 -0.9657 9 6 2.8087 3.3057 -3.0264 10 8 1.9787 2.8186 -3.7645 11 7 3.7532 4.1283 -3.5241 12 6 4.7555 4.7171 -2.6323 13 6 3.7776 4.4338 -4.9566 14 6 5.1961 4.5132 -5.5491 15 7 4.7099 5.6997 -6.2922 16 6 5.7097 6.7759 -6.2814 17 6 6.6113 6.6360 -7.4808 18 8 6.4377 5.7293 -8.2675 19 7 7.6099 7.5191 -7.6798 20 6 8.4305 7.3915 -8.7708 21 1 8.2764 6.5837 -9.4708 22 6 9.4597 8.3021 -8.9762 23 7 9.6467 9.2853 -8.1246 24 14 10.5772 8.1287 -10.4630 25 1 10.1591 6.9486 -11.2615 26 1 10.4808 9.3517 -11.2999 27 1 11.9797 7.9485 -10.0097 28 6 3.6650 5.9365 -5.2717 29 8 1.7083 2.0782 -1.2459 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.8802 1.9926 1.0245 36 1 3.9659 0.4377 0.1408 37 1 4.8735 2.8836 -0.9057 38 1 4.3462 1.5012 -1.9215 39 1 5.6210 4.0572 -2.5727 40 1 5.0642 5.6868 -3.0227 41 1 4.3270 4.8452 -1.6383 42 1 3.0946 3.8119 -5.5353 43 1 5.9672 4.7415 -4.8134 44 1 5.4530 3.6684 -6.1881 45 1 5.2049 7.7413 -6.3169 46 1 6.3044 6.7102 -5.3702 47 1 7.7485 8.2444 -7.0509 48 1 10.3654 9.9208 -8.2679 49 1 2.7009 6.2266 -5.6894 50 1 3.9856 6.5819 -4.4539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733308538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:17 Heat of formation + Delta-G solvation = -99.792758 kcal Electronic energy + Delta-G solvation = -29706.463587 eV Core-core repulsion = 25541.059558 eV Total energy + Delta-G solvation = -4165.404030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.98702 -40.97101 -39.84877 -39.14565 -36.25648 -35.86853 -34.55063 -33.31109 -33.08806 -31.48603 -29.60046 -28.08975 -27.35558 -27.06880 -25.79194 -24.48547 -22.93621 -21.85803 -21.46497 -20.94470 -20.11419 -19.84219 -18.49822 -17.83138 -17.74552 -17.52214 -17.03068 -16.65756 -16.51257 -16.22574 -15.97863 -15.64450 -15.51836 -14.93432 -14.68049 -14.50561 -14.43623 -14.21691 -14.09687 -13.97588 -13.71457 -13.62227 -13.50898 -13.21555 -13.03916 -12.91601 -12.76761 -12.63722 -12.41564 -12.40844 -12.15697 -12.13003 -11.97822 -11.88095 -11.71509 -11.50284 -11.45990 -10.95819 -10.57264 -10.38137 -9.99944 -9.75367 -9.71114 -8.46544 -5.94695 1.36244 1.41700 1.43361 1.55365 1.61718 2.06833 2.29011 2.71359 2.93017 3.19894 3.30327 3.33631 3.47518 3.58316 3.69943 3.86000 3.90895 4.06317 4.09697 4.16360 4.17658 4.25788 4.28967 4.31409 4.38223 4.39730 4.52379 4.57306 4.61482 4.68573 4.75617 4.76711 4.84121 4.89971 4.94735 4.96272 5.03968 5.07352 5.16524 5.25217 5.33232 5.36948 5.41366 5.42072 5.85690 5.90013 6.06618 6.28755 6.62020 7.04782 7.14462 7.57864 8.15099 8.70995 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.001811 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.860743 B =15461.273371 C =15722.346432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.064 3.936 4 H 0.085 0.915 5 C -0.144 4.144 6 C -0.141 4.141 7 C 0.062 3.938 8 H 0.126 0.874 9 C 0.513 3.487 10 O -0.576 6.576 11 N -0.596 5.596 12 C 0.056 3.944 13 C 0.126 3.874 14 C 0.006 3.994 15 N -0.484 5.484 16 C 0.028 3.972 17 C 0.440 3.560 18 O -0.621 6.621 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.277 1.277 26 H -0.271 1.271 27 H -0.269 1.269 28 C 0.003 3.997 29 O -0.380 6.380 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.091 0.909 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.094 0.906 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 -9.794 26.673 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.007 3.993 4 H 0.103 0.897 5 C -0.181 4.181 6 C -0.178 4.178 7 C 0.001 3.999 8 H 0.143 0.857 9 C 0.302 3.698 10 O -0.455 6.455 11 N -0.329 5.329 12 C -0.085 4.085 13 C 0.021 3.979 14 C -0.123 4.123 15 N -0.207 5.207 16 C -0.103 4.103 17 C 0.228 3.772 18 O -0.507 6.507 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.202 1.202 26 H -0.196 1.196 27 H -0.194 1.194 28 C -0.127 4.127 29 O -0.300 6.300 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.088 0.912 45 H 0.128 0.872 46 H 0.109 0.891 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.112 0.888 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.014 -10.584 24.963 29.266 hybrid contribution 0.938 0.514 -0.257 1.100 sum -10.076 -10.071 24.707 28.520 Atomic orbital electron populations 1.21718 0.95809 1.01780 1.01508 1.21766 0.96536 0.94843 1.02886 1.23132 0.95845 0.94288 0.86065 0.89700 1.23042 0.93553 1.02853 0.98685 1.23208 0.96659 0.99738 0.98244 1.23129 0.89231 0.96372 0.91131 0.85686 1.20961 0.80256 0.77729 0.90852 1.90709 1.40224 1.52875 1.61695 1.47847 1.30597 1.46667 1.07760 1.22346 0.91741 0.99862 0.94535 1.22769 0.97315 0.96623 0.81225 1.24444 0.96544 0.95308 0.96008 1.68303 1.08798 1.04036 1.39543 1.22339 0.94392 0.97702 0.95905 1.20857 0.83303 0.83717 0.89363 1.90504 1.73843 1.36609 1.49769 1.41925 1.27703 1.27201 1.24392 1.19662 1.10228 1.12849 1.03528 0.90722 1.25974 0.98876 0.94835 1.01382 1.69664 1.33182 1.15610 1.37511 0.84909 0.77859 0.78174 0.77620 1.20153 1.19637 1.19400 1.24496 0.97632 0.96127 0.94397 1.89026 1.42490 1.57361 1.41102 0.91744 0.94602 0.92127 0.88274 0.92897 0.87412 0.89401 0.85945 0.91900 0.90423 0.89686 0.87700 0.88318 0.88448 0.91225 0.87173 0.89106 0.76885 0.91303 0.88791 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.83 71.98 0.71 -1.47 16 2 C -0.12 -1.58 5.42 30.59 0.17 -1.41 16 3 C 0.06 0.82 3.41 30.96 0.11 0.92 16 4 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 5 C -0.14 -1.07 6.64 31.58 0.21 -0.86 16 6 C -0.14 -1.42 5.78 31.89 0.18 -1.23 16 7 C 0.06 0.99 2.80 30.53 0.09 1.08 16 8 H 0.13 1.21 7.33 -2.38 -0.02 1.19 16 9 C 0.51 12.37 7.12 87.66 0.62 12.99 16 10 O -0.58 -20.51 16.04 15.19 0.24 -20.27 16 11 N -0.60 -11.42 3.09 -826.84 -2.56 -13.97 16 12 C 0.06 0.52 7.58 127.77 0.97 1.49 16 13 C 0.13 3.16 4.39 46.56 0.20 3.36 16 14 C 0.01 0.18 7.41 86.36 0.64 0.82 16 15 N -0.48 -15.55 5.65 -912.20 -5.15 -20.70 16 16 C 0.03 0.92 5.28 85.56 0.45 1.37 16 17 C 0.44 20.98 7.83 87.66 0.69 21.67 16 18 O -0.62 -35.59 16.01 -3.07 -0.05 -35.63 16 19 N -0.57 -29.17 5.29 -306.98 -1.62 -30.80 16 20 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 21 H 0.07 4.60 7.16 -2.91 -0.02 4.58 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 24 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 C 0.00 0.06 7.46 86.41 0.65 0.71 16 29 O -0.38 -8.31 10.12 -130.75 -1.32 -9.63 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.03 0.71 7.91 -2.39 -0.02 0.69 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 36 H 0.09 0.60 7.70 -2.39 -0.02 0.58 16 37 H 0.12 0.44 6.53 -2.39 -0.02 0.43 16 38 H 0.06 0.91 8.05 -2.39 -0.02 0.89 16 39 H 0.08 0.56 7.70 -2.39 -0.02 0.54 16 40 H 0.08 0.70 6.35 -2.39 -0.02 0.68 16 41 H 0.10 0.35 6.02 -2.39 -0.01 0.34 16 42 H 0.10 3.13 7.22 -2.39 -0.02 3.11 16 43 H 0.10 2.19 6.17 -2.39 -0.01 2.18 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.11 3.14 8.08 -2.39 -0.02 3.12 16 46 H 0.09 2.35 7.39 -2.39 -0.02 2.33 16 47 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 48 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 49 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 50 H 0.10 1.73 6.63 -2.39 -0.02 1.71 16 Total: -1.00 -82.91 397.84 -0.97 -83.88 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.22 Total: 29.50 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 6.96 Total: 21.17 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -9.05 Total: -113.99 kcal Atomic # 8 Polarization: -64.40 SS G_CDS: -1.13 Total: -65.53 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -82.91 -0.97 -83.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733308538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.916 kcal (2) G-P(sol) polarization free energy of solvation -82.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds