Wall clock time and date at job start Tue Mar 31 2020 22:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47099 * 2 1 4 4 C 1.52994 * 109.47025 * 240.00138 * 2 1 3 5 5 O 1.42897 * 109.47172 * 119.99885 * 2 1 3 6 6 C 1.42905 * 113.99995 * 60.00273 * 5 2 1 7 7 C 1.50700 * 109.46971 * 179.97438 * 6 5 2 8 8 O 1.21277 * 120.00283 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99716 * 179.97438 * 7 6 5 10 10 C 1.47865 * 126.93020 * 0.02909 * 9 7 6 11 11 C 1.56014 * 105.11613 * 181.91012 * 10 9 7 12 12 H 1.08992 * 116.25911 * 159.69867 * 11 10 9 13 13 C 1.57091 * 99.59833 * 32.80210 * 11 10 9 14 14 C 1.49281 * 126.92632 * 179.70615 * 9 7 6 15 15 H 1.09004 * 116.12480 * 16.03025 * 14 9 7 16 16 C 1.55473 * 104.39478 * 246.97780 * 14 9 7 17 17 N 1.48284 * 105.13269 * 288.93501 * 16 14 9 18 18 C 1.46904 * 111.00073 * 122.46476 * 17 16 14 19 19 C 1.50703 * 109.47181 * 183.57525 * 18 17 16 20 20 O 1.21292 * 119.99856 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99790 * 179.97438 * 19 18 17 22 22 C 1.37096 * 119.99592 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00548 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99817 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00031 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99969 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46960 * 59.99803 * 26 24 22 28 28 H 1.48504 * 109.46783 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47111 * 299.99788 * 26 24 22 30 30 H 1.09006 * 109.47292 * 299.99867 * 1 2 3 31 31 H 1.08999 * 109.47633 * 60.00018 * 1 2 3 32 32 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46893 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46863 * 300.00453 * 3 2 1 35 35 H 1.09006 * 109.46940 * 59.99918 * 3 2 1 36 36 H 1.09003 * 109.47308 * 299.99759 * 4 2 1 37 37 H 1.08999 * 109.47599 * 60.00004 * 4 2 1 38 38 H 1.09002 * 109.47219 * 179.97438 * 4 2 1 39 39 H 1.08993 * 109.46981 * 59.99714 * 6 5 2 40 40 H 1.09005 * 109.46900 * 299.99472 * 6 5 2 41 41 H 1.09008 * 110.30921 * 300.82349 * 10 9 7 42 42 H 1.08997 * 110.31096 * 62.89855 * 10 9 7 43 43 H 1.09001 * 112.35262 * 64.33351 * 13 11 10 44 44 H 1.08995 * 112.35915 * 191.74666 * 13 11 10 45 45 H 1.08998 * 110.35749 * 169.98127 * 16 14 9 46 46 H 1.09003 * 110.22197 * 47.81678 * 16 14 9 47 47 H 1.08996 * 109.47189 * 303.57619 * 18 17 16 48 48 H 1.09007 * 109.46934 * 63.57678 * 18 17 16 49 49 H 0.96995 * 120.00179 * 0.02562 * 21 19 18 50 50 H 0.96999 * 120.00289 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1421 -2.6447 2.5252 8 8 2.8320 -1.9781 3.2671 9 7 1.8730 -3.9300 2.8286 10 6 1.0551 -4.8765 2.0402 11 6 1.0390 -6.1940 2.8756 12 1 0.2327 -6.8940 2.6566 13 6 1.0894 -5.5868 4.3235 14 6 2.3462 -4.6871 4.0250 15 1 2.7375 -4.0887 4.8478 16 6 3.3085 -5.7623 3.4463 17 7 2.4312 -6.7277 2.7411 18 6 2.8134 -6.8514 1.3281 19 6 1.8482 -7.7710 0.6253 20 8 0.9318 -8.2735 1.2409 21 7 2.0027 -8.0342 -0.6875 22 6 1.1243 -8.8704 -1.3269 23 1 0.3089 -9.3184 -0.7786 24 6 1.2839 -9.1422 -2.6801 25 7 2.2764 -8.5974 -3.3472 26 14 0.0866 -10.2809 -3.5516 27 1 -1.2860 -9.7220 -3.4573 28 1 0.4727 -10.4056 -4.9801 29 1 0.1210 -11.6198 -2.9103 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 1.9492 -2.5915 0.4008 40 1 0.4958 -2.0778 1.2908 41 1 0.0422 -4.4921 1.9200 42 1 1.5114 -5.0501 1.0656 43 1 0.2015 -4.9994 4.5577 44 1 1.2920 -6.3418 5.0829 45 1 3.8490 -6.2601 4.2514 46 1 4.0076 -5.3047 2.7462 47 1 2.7873 -5.8687 0.8572 48 1 3.8213 -7.2609 1.2588 49 1 2.7353 -7.6321 -1.1798 50 1 2.3876 -8.7868 -4.2920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753420130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:04 Heat of formation + Delta-G solvation = -66.882676 kcal Electronic energy + Delta-G solvation = -31118.751319 eV Core-core repulsion = 26954.774378 eV Total energy + Delta-G solvation = -4163.976942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29602 -39.56171 -38.36203 -37.72175 -34.23843 -33.69256 -33.59197 -31.53728 -31.06221 -29.76657 -28.46656 -27.67297 -27.17350 -26.52511 -24.92226 -24.09572 -21.55882 -20.65782 -20.17505 -19.37854 -18.70677 -17.90358 -17.56587 -16.71995 -16.40725 -16.35701 -15.84384 -15.57840 -15.21460 -14.68460 -14.57506 -14.24916 -13.94472 -13.89686 -13.70916 -13.34810 -13.27387 -12.93928 -12.73939 -12.51138 -12.45967 -12.25420 -12.10013 -12.04840 -11.99654 -11.81714 -11.62078 -11.53112 -11.44932 -11.38579 -11.24966 -11.04104 -10.94162 -10.84439 -10.49824 -10.28510 -9.81263 -9.80639 -9.55633 -8.75971 -8.44738 -8.07418 -7.97990 -6.48943 -3.90268 2.48349 2.53261 3.14247 3.21318 3.24901 3.60506 3.79510 3.89049 4.14807 4.30321 4.47812 4.50847 4.56023 4.66395 4.69408 4.75301 4.92697 4.96321 5.00535 5.03608 5.15568 5.25149 5.27974 5.30192 5.38364 5.42834 5.44768 5.46811 5.57351 5.58548 5.62385 5.73494 5.76848 5.78804 5.84845 5.86750 5.98410 6.00095 6.00397 6.11630 6.18344 6.35307 6.93639 6.94236 7.11941 7.42506 7.47943 7.97641 8.08541 8.52632 9.09913 9.45378 9.96177 10.68387 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.003437 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.411190 B = 8144.496842 C =10366.238922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 C -0.136 4.136 4 C -0.182 4.182 5 O -0.352 6.352 6 C 0.043 3.957 7 C 0.534 3.466 8 O -0.526 6.526 9 N -0.621 5.621 10 C 0.052 3.948 11 C 0.073 3.927 12 H 0.158 0.842 13 C -0.136 4.136 14 C 0.112 3.888 15 H 0.125 0.875 16 C 0.024 3.976 17 N -0.492 5.492 18 C 0.029 3.971 19 C 0.443 3.557 20 O -0.581 6.581 21 N -0.561 5.561 22 C -0.301 4.301 23 H 0.104 0.896 24 C 0.024 3.976 25 N -0.900 5.900 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 14.903 6.910 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.065 3.935 3 C -0.193 4.193 4 C -0.239 4.239 5 O -0.271 6.271 6 C -0.036 4.036 7 C 0.322 3.678 8 O -0.402 6.402 9 N -0.358 5.358 10 C -0.072 4.072 11 C -0.035 4.035 12 H 0.175 0.825 13 C -0.175 4.175 14 C 0.009 3.991 15 H 0.143 0.857 16 C -0.105 4.105 17 N -0.216 5.216 18 C -0.102 4.102 19 C 0.228 3.772 20 O -0.465 6.465 21 N -0.197 5.197 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.541 5.541 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.187 14.590 7.803 16.588 hybrid contribution -0.241 0.283 -1.730 1.770 sum -1.428 14.873 6.073 16.129 Atomic orbital electron populations 1.22460 0.95597 1.02723 1.03028 1.21602 0.93259 0.93397 0.85214 1.21734 1.02156 0.92930 1.02453 1.22469 1.02504 1.01203 0.97767 1.88070 1.74151 1.21798 1.43088 1.22180 0.99768 0.85244 0.96437 1.19887 0.80716 0.80160 0.87009 1.90706 1.38176 1.60047 1.51230 1.49280 1.51733 1.09874 1.24924 1.23492 0.95751 0.91258 0.96670 1.24931 0.93904 0.91834 0.92800 0.82528 1.24051 0.97134 0.98502 0.97797 1.24034 0.95663 0.91084 0.88343 0.85675 1.23665 0.95520 0.92017 0.99271 1.64741 1.01885 1.43518 1.11476 1.22232 1.00159 0.98821 0.89006 1.19630 0.88011 0.86631 0.82923 1.90459 1.35081 1.55508 1.65472 1.41861 1.28044 1.42430 1.07340 1.19645 1.08634 1.22685 0.92075 0.87864 1.25267 0.97562 0.98307 0.96654 1.69600 1.30324 1.44090 1.10103 0.85927 0.80095 0.80351 0.77917 1.19893 1.20971 1.19833 0.91606 0.91196 0.92086 0.91644 0.90995 0.91730 0.91952 0.91181 0.91460 0.90089 0.90195 0.90859 0.89921 0.89995 0.88511 0.89118 0.92157 0.92967 0.89159 0.77510 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.25 37.16 0.31 -1.25 16 2 C 0.10 1.06 1.14 -90.62 -0.10 0.95 16 3 C -0.14 -1.18 8.84 37.16 0.33 -0.85 16 4 C -0.18 -1.71 8.25 37.15 0.31 -1.41 16 5 O -0.35 -4.76 9.52 -55.14 -0.52 -5.29 16 6 C 0.04 0.54 4.90 36.01 0.18 0.72 16 7 C 0.53 7.94 7.97 -10.98 -0.09 7.86 16 8 O -0.53 -9.65 16.84 -14.35 -0.24 -9.89 16 9 N -0.62 -8.28 2.95 -156.91 -0.46 -8.75 16 10 C 0.05 0.69 5.62 -1.68 -0.01 0.68 16 11 C 0.07 1.06 4.19 -62.31 -0.26 0.79 16 12 H 0.16 2.64 6.37 -51.93 -0.33 2.31 16 13 C -0.14 -1.57 6.82 -22.10 -0.15 -1.72 16 14 C 0.11 1.37 5.22 -62.66 -0.33 1.04 16 15 H 0.13 1.47 8.05 -51.93 -0.42 1.05 16 16 C 0.02 0.31 6.27 -1.75 -0.01 0.30 16 17 N -0.49 -7.63 5.16 -218.53 -1.13 -8.76 16 18 C 0.03 0.49 4.65 -4.97 -0.02 0.47 16 19 C 0.44 9.64 7.45 -10.98 -0.08 9.56 16 20 O -0.58 -14.20 13.60 5.55 0.08 -14.12 16 21 N -0.56 -13.37 5.29 -10.96 -0.06 -13.43 16 22 C -0.30 -7.95 9.68 -14.93 -0.14 -8.10 16 23 H 0.10 2.85 7.16 -52.49 -0.38 2.47 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -23.61 13.05 55.50 0.72 -22.88 16 26 Si 0.93 20.26 29.55 -169.99 -5.02 15.23 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 29 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.52 6.54 -51.93 -0.34 0.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.61 6.54 -51.93 -0.34 0.27 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.94 6.42 -51.93 -0.33 0.61 16 40 H 0.08 0.86 6.42 -51.93 -0.33 0.52 16 41 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 42 H 0.08 1.20 5.23 -51.93 -0.27 0.92 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.81 7.62 -51.93 -0.40 0.42 16 47 H 0.05 0.83 5.64 -51.93 -0.29 0.53 16 48 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 49 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 50 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -31.64 391.92 -8.87 -40.51 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -7.96 Total: 11.91 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.18 Total: 9.57 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.92 Total: -53.82 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.69 Total: -29.30 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.64 -8.87 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753420130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.371 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds