Wall clock time and date at job start Tue Mar 31 2020 22:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47099 * 2 1 4 4 C 1.52994 * 109.47025 * 240.00138 * 2 1 3 5 5 O 1.42897 * 109.47172 * 119.99885 * 2 1 3 6 6 C 1.42905 * 113.99995 * 60.00273 * 5 2 1 7 7 C 1.50700 * 109.46971 * 179.97438 * 6 5 2 8 8 O 1.21277 * 120.00283 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99716 * 179.97438 * 7 6 5 10 10 C 1.47865 * 126.93020 * 0.02909 * 9 7 6 11 11 C 1.56014 * 105.11613 * 181.91012 * 10 9 7 12 12 H 1.08992 * 116.25911 * 159.69867 * 11 10 9 13 13 C 1.57091 * 99.59833 * 32.80210 * 11 10 9 14 14 C 1.49281 * 126.92632 * 179.70615 * 9 7 6 15 15 H 1.09004 * 116.12480 * 16.03025 * 14 9 7 16 16 C 1.55473 * 104.39478 * 246.97780 * 14 9 7 17 17 N 1.48284 * 105.13269 * 288.93501 * 16 14 9 18 18 C 1.46904 * 111.00073 * 122.46476 * 17 16 14 19 19 C 1.50703 * 109.47181 * 183.57525 * 18 17 16 20 20 O 1.21292 * 119.99856 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99790 * 179.97438 * 19 18 17 22 22 C 1.37096 * 119.99592 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00548 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99817 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00031 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99969 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46960 * 59.99803 * 26 24 22 28 28 H 1.48504 * 109.46783 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47111 * 299.99788 * 26 24 22 30 30 H 1.09006 * 109.47292 * 299.99867 * 1 2 3 31 31 H 1.08999 * 109.47633 * 60.00018 * 1 2 3 32 32 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46893 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46863 * 300.00453 * 3 2 1 35 35 H 1.09006 * 109.46940 * 59.99918 * 3 2 1 36 36 H 1.09003 * 109.47308 * 299.99759 * 4 2 1 37 37 H 1.08999 * 109.47599 * 60.00004 * 4 2 1 38 38 H 1.09002 * 109.47219 * 179.97438 * 4 2 1 39 39 H 1.08993 * 109.46981 * 59.99714 * 6 5 2 40 40 H 1.09005 * 109.46900 * 299.99472 * 6 5 2 41 41 H 1.09008 * 110.30921 * 300.82349 * 10 9 7 42 42 H 1.08997 * 110.31096 * 62.89855 * 10 9 7 43 43 H 1.09001 * 112.35262 * 64.33351 * 13 11 10 44 44 H 1.08995 * 112.35915 * 191.74666 * 13 11 10 45 45 H 1.08998 * 110.35749 * 169.98127 * 16 14 9 46 46 H 1.09003 * 110.22197 * 47.81678 * 16 14 9 47 47 H 1.08996 * 109.47189 * 303.57619 * 18 17 16 48 48 H 1.09007 * 109.46934 * 63.57678 * 18 17 16 49 49 H 0.96995 * 120.00179 * 0.02562 * 21 19 18 50 50 H 0.96999 * 120.00289 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1421 -2.6447 2.5252 8 8 2.8320 -1.9781 3.2671 9 7 1.8730 -3.9300 2.8286 10 6 1.0551 -4.8765 2.0402 11 6 1.0390 -6.1940 2.8756 12 1 0.2327 -6.8940 2.6566 13 6 1.0894 -5.5868 4.3235 14 6 2.3462 -4.6871 4.0250 15 1 2.7375 -4.0887 4.8478 16 6 3.3085 -5.7623 3.4463 17 7 2.4312 -6.7277 2.7411 18 6 2.8134 -6.8514 1.3281 19 6 1.8482 -7.7710 0.6253 20 8 0.9318 -8.2735 1.2409 21 7 2.0027 -8.0342 -0.6875 22 6 1.1243 -8.8704 -1.3269 23 1 0.3089 -9.3184 -0.7786 24 6 1.2839 -9.1422 -2.6801 25 7 2.2764 -8.5974 -3.3472 26 14 0.0866 -10.2809 -3.5516 27 1 -1.2860 -9.7220 -3.4573 28 1 0.4727 -10.4056 -4.9801 29 1 0.1210 -11.6198 -2.9103 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 1.9492 -2.5915 0.4008 40 1 0.4958 -2.0778 1.2908 41 1 0.0422 -4.4921 1.9200 42 1 1.5114 -5.0501 1.0656 43 1 0.2015 -4.9994 4.5577 44 1 1.2920 -6.3418 5.0829 45 1 3.8490 -6.2601 4.2514 46 1 4.0076 -5.3047 2.7462 47 1 2.7873 -5.8687 0.8572 48 1 3.8213 -7.2609 1.2588 49 1 2.7353 -7.6321 -1.1798 50 1 2.3876 -8.7868 -4.2920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753420130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:03 Heat of formation + Delta-G solvation = -88.571586 kcal Electronic energy + Delta-G solvation = -31119.691821 eV Core-core repulsion = 26954.774378 eV Total energy + Delta-G solvation = -4164.917443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.43628 -40.59056 -39.81471 -39.06048 -36.00867 -35.02167 -34.46790 -33.29868 -32.40590 -30.85996 -29.40235 -28.36908 -28.21817 -27.77789 -26.23949 -25.60093 -22.58015 -21.89869 -21.01237 -20.97765 -20.02765 -19.60913 -18.60402 -17.87831 -17.75924 -17.34130 -17.07501 -16.76826 -16.52478 -16.27006 -15.71905 -15.58912 -15.40406 -15.05568 -14.76327 -14.48528 -14.29231 -14.10899 -13.98905 -13.79737 -13.48777 -13.21699 -13.17522 -12.98219 -12.95782 -12.93719 -12.82840 -12.71070 -12.62054 -12.48549 -12.40062 -12.34237 -12.26561 -12.11447 -12.03864 -11.64685 -11.43861 -10.95982 -10.68502 -10.20752 -9.98493 -9.88673 -9.23248 -8.44138 -5.92374 1.38741 1.41158 1.44277 1.46921 1.54186 2.05575 2.29390 2.68343 2.72315 3.22210 3.24883 3.31042 3.42198 3.56511 3.75228 3.82515 3.87655 3.93641 3.97701 4.02323 4.05155 4.12248 4.28207 4.34836 4.39886 4.52653 4.57824 4.58383 4.60564 4.69652 4.73993 4.76257 4.79092 4.88122 4.89964 4.89984 4.97400 5.10170 5.13184 5.14827 5.29040 5.30150 5.43972 5.76113 5.83745 6.06789 6.09102 6.32970 6.61679 6.95588 7.15000 7.57862 8.12263 8.72874 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.003437 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.411190 B = 8144.496842 C =10366.238922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.095 3.905 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.379 6.379 6 C 0.047 3.953 7 C 0.531 3.469 8 O -0.566 6.566 9 N -0.615 5.615 10 C 0.059 3.941 11 C 0.063 3.937 12 H 0.132 0.868 13 C -0.118 4.118 14 C 0.111 3.889 15 H 0.135 0.865 16 C 0.029 3.971 17 N -0.506 5.506 18 C 0.041 3.959 19 C 0.447 3.553 20 O -0.607 6.607 21 N -0.573 5.573 22 C -0.328 4.328 23 H 0.083 0.917 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.990 3.010 27 H -0.269 1.269 28 H -0.275 1.275 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.102 0.898 49 H 0.394 0.606 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 15.565 6.844 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.057 3.943 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.299 6.299 6 C -0.032 4.032 7 C 0.321 3.679 8 O -0.444 6.444 9 N -0.351 5.351 10 C -0.064 4.064 11 C -0.045 4.045 12 H 0.149 0.851 13 C -0.156 4.156 14 C 0.009 3.991 15 H 0.153 0.847 16 C -0.099 4.099 17 N -0.231 5.231 18 C -0.090 4.090 19 C 0.235 3.765 20 O -0.493 6.493 21 N -0.210 5.210 22 C -0.458 4.458 23 H 0.101 0.899 24 C -0.212 4.212 25 N -0.562 5.562 26 Si 0.814 3.186 27 H -0.194 1.194 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.120 0.880 49 H 0.227 0.773 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.753 15.247 7.742 17.190 hybrid contribution -0.061 0.085 -1.645 1.649 sum -1.814 15.333 6.097 16.600 Atomic orbital electron populations 1.22441 0.94353 1.02907 1.03817 1.21878 0.94332 0.93748 0.84372 1.21775 1.01649 0.92328 1.03441 1.22464 1.01935 1.01096 0.98294 1.88045 1.74916 1.22172 1.44763 1.22189 1.00604 0.85127 0.95321 1.20316 0.80091 0.80223 0.87304 1.90682 1.40083 1.61009 1.52663 1.49300 1.51208 1.09513 1.25108 1.23382 0.96495 0.90826 0.95744 1.24783 0.92733 0.91733 0.95251 0.85083 1.23993 0.97324 0.98310 0.96017 1.24163 0.95848 0.90894 0.88224 0.84728 1.23694 0.95117 0.91785 0.99345 1.64754 1.02908 1.45052 1.10358 1.22082 0.98957 0.98173 0.89772 1.20435 0.87903 0.85979 0.82233 1.90449 1.36423 1.56474 1.65957 1.41920 1.28078 1.42817 1.08154 1.19626 1.09213 1.24121 0.92820 0.89856 1.25992 0.98996 0.99359 0.96818 1.69669 1.31308 1.44850 1.10421 0.85033 0.78218 0.78316 0.77078 1.19445 1.19944 1.19867 0.91870 0.89363 0.92183 0.92505 0.88603 0.92125 0.92478 0.89331 0.92374 0.89479 0.88414 0.89193 0.91153 0.88558 0.87404 0.87232 0.92648 0.91548 0.88045 0.77286 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 8.25 71.98 0.59 -2.16 16 2 C 0.10 1.81 1.14 -10.79 -0.01 1.80 16 3 C -0.13 -2.18 8.84 71.98 0.64 -1.55 16 4 C -0.18 -3.18 8.25 71.98 0.59 -2.59 16 5 O -0.38 -10.06 9.52 -129.94 -1.24 -11.30 16 6 C 0.05 1.13 4.90 71.24 0.35 1.48 16 7 C 0.53 15.35 7.97 87.66 0.70 16.05 16 8 O -0.57 -20.57 16.84 16.01 0.27 -20.30 16 9 N -0.62 -15.54 2.95 -768.73 -2.27 -17.81 16 10 C 0.06 1.50 5.62 87.16 0.49 1.99 16 11 C 0.06 1.75 4.19 46.85 0.20 1.95 16 12 H 0.13 4.44 6.37 -2.39 -0.02 4.42 16 13 C -0.12 -2.47 6.82 33.59 0.23 -2.24 16 14 C 0.11 2.51 5.22 46.86 0.24 2.75 16 15 H 0.14 2.88 8.05 -2.39 -0.02 2.86 16 16 C 0.03 0.69 6.27 86.89 0.54 1.24 16 17 N -0.51 -15.11 5.16 -845.30 -4.36 -19.46 16 18 C 0.04 1.37 4.65 85.56 0.40 1.77 16 19 C 0.45 19.62 7.45 87.66 0.65 20.28 16 20 O -0.61 -30.15 13.60 -3.07 -0.04 -30.19 16 21 N -0.57 -27.71 5.29 -306.99 -1.62 -29.33 16 22 C -0.33 -17.64 9.68 84.04 0.81 -16.83 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 25 N -0.92 -48.21 13.05 21.66 0.28 -47.92 16 26 Si 0.99 41.28 29.55 68.60 2.03 43.31 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 29 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 0.93 6.54 -2.39 -0.02 0.91 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 36 H 0.06 1.05 6.54 -2.39 -0.02 1.03 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.96 6.42 -2.39 -0.02 1.95 16 40 H 0.10 1.95 6.42 -2.38 -0.02 1.94 16 41 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.07 1.98 5.23 -2.39 -0.01 1.97 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.06 1.40 7.62 -2.39 -0.02 1.38 16 47 H 0.07 2.04 5.64 -2.39 -0.01 2.03 16 48 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 49 H 0.39 18.43 7.90 -92.71 -0.73 17.70 16 50 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -68.35 391.92 0.17 -68.18 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: 0.22 Total: 41.03 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 6.90 Total: 23.80 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -7.97 Total: -114.52 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -1.01 Total: -61.79 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -68.35 0.17 -68.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753420130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.390 kcal (2) G-P(sol) polarization free energy of solvation -68.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds